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by Thompson, Luke R and Sanders, Jon G and McDonald, Daniel and Amir, Amnon and Ladau, Joshua and Locey, Kenneth J and Prill, Robert J and Tripathi, Anupriya and Gibbons, Sean M and Ackermann, Gail and Navas-Molina, Jose A and Janssen, Stefan and Kopylova, Evguenia and Vázquez-Baeza, Yoshiki and González, Antonio and Morton, James T and Mirarab, Siavash and Xu, Zhenjiang Zech and Jiang, Lingjing and Haroon, Mohamed F and Kanbar, Jad and Zhu, Qiyun and Song, Se Jin and Kosciolek, Tomasz and Bokulich, Nicholas A and Lefler, Joshua and Brislawn, Colin J and Humphrey, Gregory and Owens, Sarah M and Hampton-Marcell, Jarrad and Berg-Lyons, Donna and McKenzie, Valerie and Fierer, Noah and Fuhrman, Jed A and Clauset, Aaron and Stevens, Rick L and Shade, Ashley and Pollard, Katherine S and Goodwin, Kelly D and Jansson, Janet K and Gilbert, Jack A and Knight, Rob and Agosto Rivera, Jose L and Al-Moosawi, Lisa and Alverdy, John and Amato, Katherine R and Andras, Jason and Angenent, Largus T and Antonopoulos, Dionysios A and Apprill, Amy and Armitage, David and Ballantine, Kate and Bárta, Jiří and Baum, Julia K and Berry, Allison and Bhatnagar, Ashish and Bhatnagar, Monica and Biddle, Jennifer F and Bittner, Lucie and Boldgiv, Bazartseren and Bottos, Eric and Boyer, Donal M and Braun, Josephine and Brazelton, William and Brearley, Francis Q and Campbell, Alexandra H and Caporaso, J. Gregory and Cardona, Cesar and Carroll, JoLynn and Cary, S. Craig and Casper, Brenda B and Charles, Trevor C and Chu, Haiyan and Claar, Danielle C and Clark, Robert G and Clayton, Jonathan B and Clemente, Jose C and Cochran, Alyssa and Coleman, Maureen L and Collins, Gavin and Colwell, Rita R and Contreras, Mónica and Crary, Benjamin B and Creer, Simon and Cristol, Daniel A and Crump, Byron C and Cui, Duoying and Daly, Sarah E and Davalos, Liliana and Dawson, Russell D and Defazio, Jennifer and Delsuc, Frédéric and Dionisi, Hebe M and Dominguez-Bello, Maria Gloria and Dowell, Robin and Dubinsky, Eric A and Dunn, Peter O and Ercolini, Danilo and Espinoza, Robert E and Ezenwa, Vanessa and ... and Earth Microbiome Project Consortiu and Earth Microbiome Project Consortium and Naturvetenskapliga fakulteten and Faculty of Sciences and Göteborgs universitet and Gothenburg University and Institutionen för marina vetenskaper and Department of marine sciences
Nature, ISSN 0028-0836, 11/2017, Volume 551, Issue 7681, pp. 457 - 463
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2017, Volume 114, Issue 26, pp. E5019 - E5020
Journal Article
mSystems, ISSN 2379-5077, 03/2017, Volume 2, Issue 2, p. e00191-16
High-throughput sequencing of 16S ribosomal RNA gene amplicons has facilitated understanding of complex microbial communities, but the inherent noise in PCR... 
DNA sequencing | Microbiome | MICROBIOLOGY | SEARCH | microbiome | Next-generation sequencing
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2017, Volume 114, Issue 26, pp. E5019 - E5020
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2017, Volume 114, Issue 9, pp. 2171 - 2176
Microbes that synthesize minerals, a process known as microbial biomineralization, contributed substantially to the evolution of current planetary environments... 
Microbial biomineralization | Magnetotactic bacteria | Archean | Geodynamo | Magnetotaxis | BACTERIA | SEDIMENTS | MULTIDISCIPLINARY SCIENCES | magnetotactic bacteria | ALGORITHMS | IDENTIFICATION | geodynamo | OXYGEN | magnetotaxis | microbial biomineralization | ALIGNMENT | GENETICS | MAGNETITE | DIVERSITY | REVEALS | Physical Sciences
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2017, Volume 114, Issue 9, p. 2171
  Microbes that synthesize minerals, a process known as microbial biomineralization, contributed substantially to the evolution of current planetary... 
Microorganisms | Phylogenetics | Evolution | Magnetism | Minerals | Geological time
Journal Article
Proceedings of the National Academy of Sciences, USA, ISSN 0027-8424, 02/2017, Volume 114, Issue 9, pp. 2171 - 2171
Microbes that synthesize minerals, a process known as microbial biomineralization, contributed substantially to the evolution of current planetary environments... 
Journal Article
Journal of Discrete Algorithms, ISSN 1570-8667, 02/2012, Volume 11, Issue 1, pp. 3 - 14
A recent paper Fan et al. (2006) showed that the occurrence of two squares at the same position in a string, together with the occurrence of a third near by,... 
String algorithms | Combinatorics on words | Maximal periodicities | Three squares lemma | Repetitions | Runs | Algorithms
Journal Article
MICROBIOME, ISSN 2049-2618, 05/2015, Volume 3, Issue 1, p. 20
Background: The operational taxonomic unit (OTU) is widely used in microbial ecology. Reproducibility in microbial ecology research depends on the reliability... 
SEQUENCES | MICROBIOLOGY | RNA | Analysis | Biological diversity
Journal Article
ACM Computing Surveys (CSUR), ISSN 0360-0300, 11/2012, Volume 45, Issue 1, pp. 1 - 17
Journal Article
ACM Computing Surveys, ISSN 0360-0300, 11/2012, Volume 45, Issue 1, p. 1
  Since 1977, when Lempel and Ziv described a kind of string factorization useful for text compression, there has been a succession of algorithms proposed for... 
Studies | Algorithms | Efficiency | Data compression | Mathematics
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2015, Volume 1269, pp. 279 - 291
Metatranscriptomic data contributes another piece of the puzzle to understanding the phylogenetic structure and function of a community of organisms.... 
16S rRNA phylogenetic analysis | High-throughput sequencing | Metatranscriptomics | RNA, Ribosomal, 16S - genetics | Software | High-Throughput Nucleotide Sequencing - methods | Metagenomics - methods | Life Sciences | Computer Science
Journal Article
Nature, ISSN 0028-0836, 11/2017, Volume 551, Issue 7681, pp. 457 - 463
Our growing awareness of the importance and diversity of the microbial world contrasts starkly with our limited understanding of its fundamental structure.... 
Earth | ENVIRONMENTAL SCIENCES | global | BASIC BIOLOGICAL SCIENCES | microbiome | Environmental Studies | Miljövetenskap | Naturvetenskap | Miljövetenskapliga studier | Natural Sciences | Earth and Related Environmental Sciences | Environmental Sciences | Geovetenskap och miljövetenskap
Journal Article
Microbiome, ISSN 2049-2618, 2015, Volume 3, p. 34
[This corrects the article DOI: 10.1186/s40168-015-0081-x.]. 
Journal Article
mSystems, ISSN 2379-5077, 01/2016, Volume 1, Issue 1
Sequence clustering is a common early step in amplicon-based microbial community analysis, when raw sequencing reads are clustered into operational taxonomic... 
Microbial community analysis | Operational taxonomic units | Amplicon sequencing | Sequence clustering | sequence clustering | HUMAN MICROBIOME | SEARCH | MICROBIOLOGY | amplicon sequencing | TAXONOMY | microbial community analysis | operational taxonomic units | GREENGENES | SETS | DIVERSITY | LARGE PROTEIN DATABASES | PROGRAM | QIIME | RESOURCE
Journal Article
MSYSTEMS, ISSN 2379-5077, 05/2018, Volume 3, Issue 3, p. e00031-18
Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to... 
REGRESSION | BACTERIA | MASS-SPECTROMETRY DATA | MOLECULAR NETWORKING | CARBOHYDRATE-ACTIVE ENZYMES | citizen science | MICROBIOLOGY | COMMUNITIES | microbiome | DISCOVERY | METAGENOMICS | DIVERSITY | MAJOR DEPRESSIVE DISORDER | BASIC BIOLOGICAL SCIENCES
Journal Article