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index medicus (11) 11
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erosive osteoarthritis (4) 4
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respiratory function tests (2) 2
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scleroderma, systemic - complications (2) 2
sensitivity and specificity (2) 2
stochastic models (2) 2
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[ info.info-bi ] computer science [cs]/bioinformatics [q-bio.qm] (1) 1
[ info.info-mo ] computer science [cs]/modeling and simulation (1) 1
[ stat ] statistics [stat] (1) 1
[info.info-bi]computer science [cs]/bioinformatics [q-bio.qm] (1) 1
[info.info-mo]computer science [cs]/modeling and simulation (1) 1
ambulatory blood pressure monitoring (1) 1
angiomatosis (1) 1
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1. Full Text DIALYSIS. PATHOPHYSIOLOGY AND CLINICAL STUDIES
by Humalda, J. K and Assa, S and Navis, G. J and Franssen, C. F. M and De Borst, M. H and Ogawa, H and Ota, Y and Watanabe, T and Watanabe, Y and Nishii, H and Sato, A and Waniewski, J and Debowska, M and Wojcik-Zaluska, A and Ksiazek, A and Zaluska, W and Guastoni, C. M and Turri, C and Toma, L and Rombola, G and Frattini, G and Romei Longhena, G and Teatini, U and Siriopol, D.-C and Stuard, S and Ciolan, A and Mircescu, G and Raluca, D and Nistor, I and Covic, A and De Roij Van Zuijdewijn, C. L and Chapdelaine, I and Nube, M. J and Blankestijn, P. J and Bots, M. L and Konings, S. J and Van Den Dorpel, M. A and Van Der Weerd, N. C and Ter Wee, P. M and Grooteman, M. P and Djuric, P. S and Jankovic, A and Tosic, J and Bajcetic, S and Damjanovic, T and Popovic, J and Dimkovic, N and Marinkovic, J and Djuric, Z and Knezevic, V and Lazarevic, T and Ljubenovic, S and Markovic, R and Rabrenovic, V and Djukanovic, L and Radovic Maslarevic, V and Mathrani, V and Drew, P and Chess, J. I and Williams, A. I and Robertson, S and Jibani, M and Aithal, V. I and Kumwenda, M and Roberts, G and Mikhail, A. I and Grzegorzewska, A. E and Ostromecki, G and Mostowska, A and Sowi ska, A and Jagodzi ski, P. P and Wu, H.-Y and Chen, H.-Y and Hsu, S.-P and Pai, M.-F and Yang, J.-Y and Peng, Y.-S and Hirose, M and Hasegawa, T and Kaneshima, N and Sasai, F and Komukai, D and Takahashi, K and Koiwa, F and Shishido, K and Yoshimura, A and Selim, G and Stojceva-Taneva, O and Tozija, L and Dzekova-Vidimliski, P and Trajceska, L and Petronievic, Z and Gelev, S and Amitov, V and Sikole, A and Moon, S. J and Yoon, S. Y and Shin, D. H and Lee, J. E and Kim, H.-J and ...
Nephrology Dialysis Transplantation, ISSN 0931-0509, 05/2014, Volume 29, Issue suppl 3, pp. iii501 - iii515
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2. Full Text An organelle-specific protein landscape identifies novel diseases and molecular mechanisms
by Boldt, K and Reeuwijk, J. van and Lu, Q and Koutroumpas, K and Nguyen, T.T.M and Texier, Y and Beersum, S.E.C. van and Horn, N and Willer, J.R and Mans, D.A and Dougherty, G and Lamers, I.J and Coene, K.L.M and Arts, H.H and Betts, M.J and Beyer, T and Bolat, E and Gloeckner, C.J and Haidari, K and Hetterschijt, E.C and Iaconis, D and Jenkins, D and Klose, F and Knapp, B and Latour, B.L and Letteboer, S.J.F and Marcelis, C.L.M and Mitic, D and Morleo, M and Oud, M.M and Riemersma, M and Rix, S and Terhal, P.A and Toedt, G and Dam, T.J.P. van and Vrieze, E. de and Wissinger, Y and Wu, K.M and Apic, G and Beales, P.L and Blacque, O.E and Gibson, T.J and Huynen, M.A and Katsanis, N and Kremer, H and Omran, H and WIjk, E. van and Wolfrum, U and Kepes, F and Davis, E.E and Franco, B and Giles, R.H and Ueffing, M and Russell, R.B and Roepman, R and UK10K Rare Dis Grp and UK10K Rare Diseases Group
Nature Communications, ISSN 2041-1723, 2016, Volume 7, Issue 1, p. 11491
Cellular organelles provide opportunities to relate biological mechanisms to disease. Here we use affinity proteomics, genetics and cell biology to interrogate... 
NETWORK REVEALS | CELLS | COMPLEX | TANDEM AFFINITY PURIFICATION | MICROTUBULE | MULTIDISCIPLINARY SCIENCES | CILIOGENESIS | MUTATIONS | INTRAFLAGELLAR TRANSPORT | STATISTICAL-MODEL | PRIMARY CILIA | Humans | Proteins - isolation & purification | Protein Interaction Maps | Spine - abnormalities | Ciliopathies - genetics | Muscle Hypotonia - therapy | DNA Mutational Analysis | Systems Analysis | Mass Spectrometry | HEK293 Cells | Fibroblasts | Dwarfism - pathology | Proteomics - methods | Spine - pathology | Chromatography, Affinity - methods | Molecular Targeted Therapy - methods | Ciliopathies - therapy | Datasets as Topic | Muscle Hypotonia - genetics | Cilia - metabolism | Proteins - genetics | Dwarfism - genetics | Muscle Hypotonia - pathology | Protein Interaction Mapping - methods | Dwarfism - therapy | Proteins - metabolism | Biological Transport - physiology | Ciliopathies - pathology
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3. Full Text HYPERTENSION
by Xu, H and Huang, X and Riserus, U and Cederholm, T and Lindholm, B and Arnlov, J and Carrero, J. J and Leiba, A and Vivante, A and Bulednikov, Y and Golan, E and Skorecki, K and Shohat, T and Mjoen, G and Zannad, F and Jardine, A and Schmieder, R and Fellstrom, B and Holdaas, H and Zager, P and Miskulin, D and Gassman, J and Kendrick, C and Ploth, D and Jhamb, M and Jankowski, V and Schulz, A and Mischak, H and Zidek, W and Jankowski, J and Lee, Y.-K and Cho, A and Kim, J.-K and Choi, M.-J and Kim, S. J and Yoon, J.-W and Koo, J.-R and Kim, H. J and Noh, J.-W and Itano, S and Satoh, M and Kidokoro, K and Sasaki, T and Kashihara, N and Koutroumpas, G and Sarafidis, P and Georgianos, P and Karpetas, A and Protogerou, A and Syrganis, C and Malindretos, P and Raptopoulou, K and Panagoutsos, S and Pasadakis, P and Vink, E. E and De Boer, A and Verloop, W. L and Spiering, W and Voskuil, M and Vonken, E.-J and Hoogduin, J. M and Leiner, T and Bots, M. L and Blankestijn, P. J and Sarafidis, P. A and Karpetas, A. V and Georgianos, P. I and Bikos, A and Sklavenitis-Pistofidis, R and Tzimou, R and Raptis, V and Vakianis, P and Tersi, M and Liakopoulos, V and Lasaridis, A. N and Ribeiro, S and Fernandes, J and Garrido, P and Sereno, J and Vala, H and Bronze Da Rocha, E and Belo, L and Costa, E and Reis, F and Santos-Silva, A and Kalaitzidis, R and Skapinakis, P and Karathanos, V and Karasavvidou, D and Katatsis, G and Pappas, K and Hatzidakis, S and Siamopoulos, K and Margulis, F and Sabbatiello, R and Castro, C and Ramallo, S and Martinez, M and Schiavelli, R and Ganem, D and ... and On Behalf Of The AURORA Study Group
Nephrology Dialysis Transplantation, ISSN 0931-0509, 05/2014, Volume 29, Issue suppl 3, pp. iii79 - iii89
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4. Full Text CiliaCarta: An integrated and validated compendium of ciliary genes
by Dam, T.J.P. van and Kennedy, J and Lee, R. van der and Vrieze, E. de and Wunderlich, K.A and Rix, S and Dougherty, G.W and Lambacher, N.J and Li, C and Jensen, V.L and Leroux, M.R and Hjeij, R and Horn, N and Texier, Y and Wissinger, Y and Reeuwijk, J. van and Wheway, G and Knapp, B and Scheel, J.F and Franco, B and Mans, D.A and WIjk, E. van and Kepes, F and Slaats, G.G and Toedt, G and Kremer, H and Omran, H and Szymanska, K and Koutroumpas, K and Ueffing, M and Nguyen, T.T.M and Letteboer, S.J.F and Oud, M.M and Beersum, S.E.C. van and Schmidts, M and Beales, P.L and Lu, Q and Giles, R.H and Szklarczyk, R and Russell, R.B and Gibson, T.J and Johnson, C.A and Blacque, O.E and Wolfrum, U and Boldt, K and Roepman, R and Hernandez-Hernandez, V and Huynen, M.A
PLoS One, ISSN 1932-6203, 2019, Volume 14, Issue 5, p. e0216705
The cilium is an essential organelle at the surface of mammalian cells whose dysfunction causes a wide range of genetic diseases collectively called... 
SOLUTE-CARRIER-PROTEIN | LEBER CONGENITAL AMAUROSIS | TRANSITION ZONE | MULTIDISCIPLINARY SCIENCES | RETINAL PHOTORECEPTOR CELLS | MUTATIONS | DIFFERENTIATION | IDENTIFICATION | INTRAFLAGELLAR TRANSPORT | EXPRESSION | PRIMARY CILIUM | Proteins | Genomics | Cells | Pediatrics | Neurosciences | Animal models | Laboratories | Genes | Otolaryngology | Biochemistry | Genomes | Mammalian cells | Gene sequencing | Physiology | Life sciences | Synthetic biology | Bioinformatics | Informatics | Phenotypes | Zebrafish | Medicine | Brain research | Hospitals | Cognition & reasoning | Photoreceptors | Molecular biology | Bayesian analysis
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5. Full Text Modeling and analysis of DNA replication
by Koutroumpas, Konstantinos and Lygeros, John
Automatica, ISSN 0005-1098, 2011, Volume 47, Issue 6, pp. 1156 - 1164
DNA replication is an important process in the life of a cell. It has to be completed with extreme accuracy in a specific phase of the cell cycle, known as the... 
DNA replication | Piecewise deterministic Markov process | Systems biology | Modeling | YEAST | ORIGINS | MCM PROTEINS | INITIATION | DYNAMICS | AUTOMATION & CONTROL SYSTEMS | ENGINEERING, ELECTRICAL & ELECTRONIC | Markov processes | Monte Carlo method | Models | Analysis | DNA
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6. Full Text Stochastic Hybrid Modeling of DNA Replication across a Complete Genome
by J. Lygeros and K. Koutroumpas and S. Dimopoulos and I. Legouras and P. Kouretas and C. Heichinger and P. Nurse and Z. Lygerou
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2008, Volume 105, Issue 34, pp. 12295 - 12300
DNA replication in eukaryotic cells initiates from hundreds of origins along their genomes, leading to complete duplication of genetic information before cell... 
Replication origin | Yeasts | DNA replication | Experimental data | Mitosis | Cell cycle | Genomes | Stochastic models | Modeling | Hybridity | Schizosaccharomyces pombe | Fission yeast | Random gap problem | Systems biology | systems biology | random gap problem | cell cycle | MULTIDISCIPLINARY SCIENCES | CELL-SIZE | DIVISION | EGGS | ORIGINS | GENE | FIRE | SEQUENCE | fission yeast | SCHIZOSACCHAROMYCES-POMBE | Schizosaccharomyces - genetics | Genome, Fungal - genetics | Stochastic Processes | Interphase | Models, Biological | S Phase | DNA Replication | Genomics | Models | Genetic aspects | Research | Saccharomyces | DNA biosynthesis | Initiation factors | Hybrids | Cell division | Data processing | Replication | Stochasticity | Replication forks | Biological Sciences | Physical Sciences
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7. Full Text Blood pressure variability is increasing from the first to the second day of the interdialytic interval in hemodialysis patients
by Karpetas, Antonios and Loutradis, Charalampos and Bikos, Athanasios and Tzanis, Georgios and Koutroumpas, Georgios and Lazaridis, Antonios A and Mavromatidis, Konstantinos and Liakopoulos, Vassilios and Papagianni, Aikaterini and Zebekakis, Pantelis and Ruilope, Luis M and Parati, Gianfranco and Sarafidis, Pantelis A
Journal of Hypertension, ISSN 0263-6352, 08/2017, Volume 35, Issue 12, pp. 2517 - 2526
OBJECTIVES:Patients with end-stage renal-disease under hemodialysis have increased cardiovascular risk and experience severe blood pressure (BP) fluctuations... 
ambulatory blood pressure monitoring | blood pressure variability | hemodialysis | average real variability | DIFFERENT INDEXES | PROGNOSTIC VALUE | EUROPEAN-SOCIETY | HYPERTENSIVE PATIENTS | CONSENSUS DOCUMENT | DIALYSIS | WAVE REFLECTIONS | WORKING GROUP | ARTERIAL STIFFNESS | CARDIOVASCULAR MORTALITY | PERIPHERAL VASCULAR DISEASE | Kidney Failure, Chronic - physiopathology | Cardiovascular Diseases - etiology | Cardiovascular Diseases - physiopathology | Humans | Middle Aged | Risk Factors | Male | Blood Pressure Monitoring, Ambulatory - instrumentation | Kidney Failure, Chronic - therapy | Kidney Failure, Chronic - complications | Female | Aged | Blood Pressure - physiology | Renal Dialysis
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8. Full Text Ultrasonographic evidence of inflammation is frequent in hands of patients with erosive osteoarthritis
by Vlychou, M and Koutroumpas, A and Malizos, K and Sakkas, L.I
Osteoarthritis and Cartilage, ISSN 1063-4584, 2009, Volume 17, Issue 10, pp. 1283 - 1287
Summary Objective Erosive osteoarthritis (OA) (EOA) is considered an aggressive form of primary OA that is defined radiographically by intra-articular erosions... 
Rheumatology | Radiography | Erosive osteoarthritis | Synovitis | Erosions | Ultrasound | Tenosynovitis | SONOGRAPHY | RHEUMATOLOGY | PSORIATIC-ARTHRITIS | BONE EROSIONS | EARLY RHEUMATOID-ARTHRITIS | DISEASE | CONVENTIONAL RADIOGRAPHY | DOPPLER ULTRASOUND | ORTHOPEDICS | Synovial Membrane - diagnostic imaging | Humans | Middle Aged | Osteoarthritis - diagnostic imaging | Synovial Membrane - pathology | Male | Osteoarthritis - physiopathology | Finger Joint - pathology | Osteophyte - diagnostic imaging | Female | Aged | Inflammation - diagnostic imaging | Finger Joint - diagnostic imaging | Ultrasonography - methods | Ultrasonography - standards | Osteoarthritis
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9. Full Text [PP.07.29] BLOOD PRESSURE VARIABILITY IS INCREASING FROM THE FIRST TO THE SECOND DAY OF THE INTERDIALYTIC INTERVAL IN HEMODIALYSIS PATIENTS
by Karpetas, A and Loutradis, C and Lazaridis, A and Bikos, A and Tzanis, G and Koutroumpas, G and Mavromatidis, K and Liakopoulos, V and Zebekakis, P and Ruilope, L.M and Parati, G and Sarafidis, P.S
Journal of Hypertension, ISSN 0263-6352, 09/2017, Volume 35, p. e144
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10. Full Text Anti-cyclic citrullinated peptide-2 (CCP2) autoantibodies and extra-articular manifestations in Greek patients with rheumatoid arthritis
by Alexiou, Ioannis and Alexiou, Ioannis and Germenis, Anastasios and Germenis, Anastasios and Koutroumpas, Athanasios and Koutroumpas, Athanasios and Kontogianni, Anastasia and Kontogianni, Anastasia and Theodoridou, Katerina and Theodoridou, Katerina and Sakkas, Lazaros I and Sakkas, Lazaros I
Clinical Rheumatology, ISSN 0770-3198, 4/2008, Volume 27, Issue 4, pp. 511 - 513
The objective of our study was to establish whether there is an association between rheumatoid arthritis with extra-articular manifestations (exRA) and... 
Anti-cyclic citrullinated antibodies | Autoantibodies | Medicine & Public Health | Extra-articular manifestations | Rheumatoid arthritis | Rheumatology | Biomarkers | ANTIBODIES | RADIOLOGICAL PROGRESSION | DIAGNOSTIC-VALUE | biomarkers | DISEASE | RHEUMATOLOGY | extra-articular manifestations | INFLIXIMAB | anti-cyclic citrullinated antibodies | autoantibodies | rheumatoid arthritis | ASSOCIATION | Pulmonary Fibrosis - diagnosis | Rheumatoid Nodule - immunology | Prognosis | Rheumatoid Nodule - diagnosis | Autoantibodies - blood | Felty Syndrome - immunology | Humans | Middle Aged | Vasculitis - etiology | Sjogren's Syndrome - immunology | Raynaud Disease - etiology | Arthritis, Rheumatoid - complications | Vasculitis - immunology | Greece - ethnology | Retrospective Studies | Pulmonary Fibrosis - etiology | Rheumatoid Nodule - etiology | Sjogren's Syndrome - etiology | Felty Syndrome - etiology | Pulmonary Fibrosis - immunology | Peptides, Cyclic - immunology | Raynaud Disease - diagnosis | Rheumatoid Factor - immunology | Serositis - diagnosis | Vasculitis - diagnosis | Serositis - etiology | Sjogren's Syndrome - diagnosis | Arthritis, Rheumatoid - ethnology | Serositis - immunology | Aged | Raynaud Disease - immunology | Arthritis, Rheumatoid - immunology | Felty Syndrome - diagnosis | Autoimmunity | Rheumatoid factor | Immunoglobulins | Peptides | Rheumatism
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11. Full Text From proteomic data to networks: Statistics and methods reveal ciliary protein interaction landscape
by Lu, Q and Koutroumpas, K and Boldt, K and Reeuwijk, J.V and Katsanis, N and Képès, F and Roepman, R and Ueffing, M and Russell, R.B
Cilia, ISSN 2046-2530, 07/2015, Volume 4, Issue 1
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12. Full Text Stochastic hybrid modeling of DNA replication across a complete genome (Proceedings of the National Academy of Sciences of the United States of America (2008) 105, 34, (12295-12300) DOI 10.1073/pnas.0805549105)
by Lygeros, J and Koutroumpas, K and Dimopoulos, S and Legouras, I and Kouretas, P and Heichinger, C and Nurse, P and Lygerou, Z
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2009, Volume 106, Issue 23, p. 9535
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13. Full Text Limb salvage after gas gangrene: A case report and review of the literature
by Aggelidakis, John and Lasithiotakis, Konstantinos and Topalidou, Anastasia and Koutroumpas, John and Kouvidis, Georgios and Katonis, Paulos
World Journal of Emergency Surgery, ISSN 1749-7922, 08/2011, Volume 6, Issue 1, pp. 28 - 28
Gas gangrene is a necrotic infection of soft tissue associated with high mortality, often necessitating amputation in order to control the infection. Herein we... 
SURGERY | EMERGENCY MEDICINE | Care and treatment | Gas gangrene | Limb salvage | Diagnosis | Research | Health aspects | Risk factors | Irrigation | Substance abuse treatment | Pain | Antibiotics | Oxygen therapy | Skin & tissue grafts | Gangrene | Emergency medical care | Hospitalization | Manuscripts | Blood
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14. Full Text Stochastic hybrid modeling of DNA replication across a complete genome (vol 105, pg 12295, 2008)
by Lygeros, J and Koutroumpas, K and Dimopoulos, S and Legouras, I and Kouretas, P and Heichinger, C and Nurse, P and Lygerou, Z
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, ISSN 0027-8424, 06/2009, Volume 106, Issue 23, pp. 9535 - 9535
MULTIDISCIPLINARY SCIENCES
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15. Full Text A systems biology approach towards the prediction of ciliopathy mechanisms
by Koutroumpas, K and Van Dam, J and Toedt, G and Lu, Q and Van Reeuwijk, J and Boldt, K and Gibson, T and Roepman, R and Ueffing, M and Russell, R.B and Huynen, M and Elati, M and Képès, F and E.U. The Syscilia Consortium, The Syscilia Consortium and E.U. The Syscilia Consortium
Cilia, ISSN 2046-2530, 07/2015, Volume 4, Issue 1
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16. Full Text Parameter identification for stochastic hybrid systems using randomized optimization: A case study on subtilin production by Bacillus subtilis
by Koutroumpas, Konstantinos and Cinquemani, Eugenio and Kouretas, Panagiotis and Lygeros, John
Nonlinear Analysis: Hybrid Systems, ISSN 1751-570X, 2008, Volume 2, Issue 3, pp. 786 - 802
In this paper we study the parameter identification problem for a stochastic hybrid model of the production of the antibiotic subtilin by the bacterium . We... 
Randomized optimization | Biochemical networks | Subtilin production | Parameter identification | Stochastic hybrid models | MATHEMATICS, APPLIED | AUTOMATION & CONTROL SYSTEMS
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17. Stochastic hybrid modeling of DNA replication across a complete genome
by J Lygeros and K Koutroumpas and S DimopouIos and I Legouras and P Kouretas and C Heichinger and P Nurse and Z Lygerou
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 08/2008, Volume 105, Issue 34, p. 12295
  DNA replication in eukaryotic cells initiates from hundreds of origins along their genomes, leading to complete duplication of genetic information before... 
Eukaryotes | Genomics | Cell division | Stochastic models | Deoxyribonucleic acid--DNA
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18. Full Text Systematic exploration of the ciliary protein landscape by large-scale affinity proteomics
by Boldt, K and Van Reeuwijk, J and Lu, Q and Koutroumpas, K and Horn, N and Van Beersum, S and Texier, Y and Nguyen, T.M and Willer, J.R and Katsanis, N and Képès, F and Russell, R.B and Ueffing, M and Roepman, R and E.U. The Syscilia Consortium, The Syscilia Consortium and E.U. The Syscilia Consortium
Cilia, ISSN 2046-2530, 07/2015, Volume 4, Issue 1, p. P89
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19. Full Text Co-morbidities increase the risk of serious infections in patients with rheumatoid arthritis treated with TNFα inhibitors
by Davas, Evangelos M and Alexiou, Ioannis and Boulbou, Mary and Koutroumpas, Athanasios and Makaritsis, Konstantinos and Stathakis, Nikolaos and Sakkas, Lazaros I
Journal of Infection, ISSN 0163-4453, 2008, Volume 57, Issue 5, pp. 418 - 420
Infectious Disease | INTERSTITIAL LUNG-DISEASE | INFECTIOUS DISEASES | BACTERIAL-INFECTIONS | THERAPY | BIOLOGICS-REGISTER | ANTAGONISTS | ANTITUMOR NECROSIS FACTOR
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20. Full Text An integrated power aware system for robotic-based lunar exploration
by Koveos, Y and Panousopoulou, A and Kolyvas, E and Reppa, V and Koutroumpas, K and Tsoukalas, A and Tzes, A
2007 IEEE/RSJ International Conference on Intelligent Robots and Systems, ISSN 2153-0858, 10/2007, pp. 827 - 832
An integrated system for a power-aware robotic-centric exploratory lunar mission is the subject of this article. The robots communicate with a base station... 
Base stations | Power supplies | Photovoltaic cells | Laser mode locking | Moon | Optical network units | Mobile robots | Laser beams | Robotics and automation | Intelligent robots
Conference Proceeding
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