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1. Full Text miROrtho: computational survey of microRNA genes
by Gerlach, Daniel and Kriventseva, Evgenia V and Rahman, Nazim and Vejnar, Charles E and Zdobnov, Evgeny M
Nucleic acids research, ISSN 0305-1048, 1/2009, Volume 37, Issue suppl_1, pp. D111 - D117
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | User-Computer Interface | Sequence Alignment | Genomics | MicroRNAs - genetics | Internet | Nucleic Acid Conformation | Databases, Nucleic Acid | MicroRNAs - chemistry | Index Medicus
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2. Full Text BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs
by Simão, Felipe A and Waterhouse, Robert M and Ioannidis, Panagiotis and Kriventseva, Evgenia V and Zdobnov, Evgeny M
Bioinformatics, ISSN 1367-4803, 10/2015, Volume 31, Issue 19, pp. 3210 - 3212
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Gene Dosage - genetics | Computational Biology - methods | Animals | Humans | Molecular Sequence Annotation - methods | Software | Genome | Genomics - methods | Index Medicus | Annotations | Completeness | Genomes | Assessments | Bioinformatics | Assembly | Computer programs
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3. Full Text Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
by Vishvanath Nene and Jennifer R. Wortman and Daniel Lawson and Brian Haas and Chinnappa Kodira and Zhijian (Jake) Tu and Brendan Loftus and Zhiyong Xi and Karyn Megy and Manfred Grabherr and Quinghu Ren and Evgeny M. Zdobnov and Neil F. Lobo and Kathryn S. Campbell and Susan E. Brown and Maria F. Bonaldo and Jingsong Zhu and Steven P. Sinkins and David G. Hogenkamp and Paolo Amedeo and Peter Arensburger and Peter W. Atkinson and Shelby Bidwell and Jim Biedler and Ewan Birney and Robert V. Bruggner and Javier Costas and Monique R. Coy and Jonathan Crabtree and Matt Crawford and Becky deBruyn and David DeCaprio and Karin Eiglmeier and Eric Eisenstadt and Hamza El-Dorry and William M. Gelbart and Suely L. Gomes and Martin Hammond and Linda I. Hannick and James R. Hogan and Michael H. Holmes and David Jaffe and J. Spencer Johnston and Ryan C. Kennedy and Hean Koo and Saul Kravitz and Evgenia V. Kriventseva and David Kulp and Kurt LaButti and Eduardo Lee and Song Li and Diane D. Lovin and Chunhong Mao and Evan Mauceli and Carlos F. M. Menck and Jason R. Miller and Philip Montgomery and Akio Mori and Ana L. Nascimento and Horacio F. Naveira and Chad Nusbaum and Sinéad O'Leary and Joshua Orvis and Mihaela Pertea and Hadi Quesneville and Kyanne R. Reidenbach and Yu-Hui Rogers and Charles W. Roth and Jennifer R. Schneider and Michael Schatz and Martin Shumway and Mario Stanke and Eric O. Stinson and Jose M. C. Tubio and Janice P. VanZee and Sergio Verjovski-Almeida and Doreen Werner and Owen White and Stefan Wyder and Qiandong Zeng and Qi Zhao and Yongmei Zhao and Catherine A. Hill and Alexander S. Raikhel and Marcelo B. Soares and Dennis L. Knudson and Norman H. Lee and James Galagan and Steven L. Salzberg and Ian T. Paulsen and George Dimopoulos and Frank H. Collins and Bruce Birren and Claire M. Fraser-Liggett and David W. Severson
Science (American Association for the Advancement of Science), ISSN 0036-8075, 6/2007, Volume 316, Issue 5832, pp. 1718 - 1723
Transposons | Genetic vectors | Introns | Genes | DNA | Genomes | Insect vectors | Chromosomes | Insect genetics | Mosquitos | Research Article | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics | Microbiology | Virology | Anopheles - metabolism | Multigene Family | Species Specificity | Anopheles - genetics | Humans | Synteny | Molecular Sequence Data | Male | Drosophila melanogaster - genetics | Insect Vectors - metabolism | Yellow Fever - transmission | Aedes - metabolism | Sex Determination Processes | Membrane Transport Proteins - genetics | Base Sequence | Female | Transcription, Genetic | Genome, Insect | Genes, Insect | Yellow Fever - prevention & control | Insect Proteins - genetics | Arboviruses | Protein Structure, Tertiary - genetics | Sex Characteristics | Aedes - genetics | Sequence Analysis, DNA | DNA Transposable Elements | Dengue - prevention & control | Animals | Insect Vectors - genetics | Dengue - transmission | Physiological aspects | Aedes albopictus | Genetic aspects | Health aspects | Aedes | Comparative studies | Viruses | Disease transmission | Insects | Epidemiology | Genomics | Index Medicus | Life Sciences | Anopheles gambiae | Protein Structure, Tertiary | Insect Vectors | Dengue | Biochemistry, Molecular Biology | Sex Determination (Genetics) | Membrane Transport Proteins | Yellow Fever | Drosophila melanogaster | Insect Proteins
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4. Full Text The Ecoresponsive Genome of "Daphnia pulex"
by John K. Colbourne and Michael E. Pfrender and Donald Gilbert and W. Kelley Thomas and Abraham Tucker and Todd H. Oakley and Shinichi Tokishita and Andrea Aerts and Georg J. Arnold and Malay Kumar Basu and Darren J. Bauer and Carla E. Cáceres and Liran Carmel and Claudio Casola and Jeong-Hyeon Choi and John C. Detter and Qunfeng Dong and Serge Dusheyko and Brian D. Eads and Thomas Fröhlich and Kerry A. Geiler-Samerotte and Daniel Gerlach and Phil Hatcher and Sanjuro Jogdeo and Jeroen Krijgsveld and Evgenia V. Kriventseva and Dietmar Kültz and Christian Laforsch and Erika Lindquist and Jacqueline Lopez and J. Robert Manak and Jean Muller and Jasmyn Pangilinan and Rupali P. Patwardhan and Samuel Pitluck and Ellen J. Pritham and Andreas Rechtsteiner and Mina Rho and Igor B. Rogozin and Onur Sakarya and Asaf Salamov and Sarah Schaack and Harris Shapiro and Yasuhiro Shiga and Courtney Skalitzky and Zachary Smith and Alexander Souvorov and Way Sung and Zuojian Tang and Dai Tsuchiya and Hank Tu and Harmjan Vos and Mei Wang and Yuri I. Wolf and Hideo Yamagata and Takuji Yamada and Yuzhen Ye and Joseph R. Shaw and Justen Andrews and Teresa J. Crease and Haixu Tang and Susan M. Lucas and Hugh M. Robertson and Peer Bork and Eugene V. Koonin and Evgeny M. Zdobnov and Igor V. Grigoriev and Michael Lynch and Jeffrey L. Boore and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Science (American Association for the Advancement of Science), ISSN 0036-8075, 2/2011, Volume 331, Issue 6017, pp. 555 - 561
Ecological modeling | RESEARCH ARTICLE | Ecological genetics | Gene interaction | Introns | Genes | Genomics | Drosophila | Genomes | Biology | Hemoglobins | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Animals | Biological evolution | Cytogenetics | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Invertebrata | Adaptation, Physiological | Gene Duplication | Amino Acid Sequence | Gene Expression | Multigene Family | Daphnia - physiology | Molecular Sequence Annotation | Gene Expression Regulation | Molecular Sequence Data | Chromosome Mapping | Gene Expression Profiling | Phylogeny | Sequence Analysis, DNA | Gene Conversion | Metabolic Networks and Pathways - genetics | Base Sequence | Ecosystem | Environment | Genes, Duplicate | Genome | Daphnia - genetics | Evolution, Molecular | Analysis | Index Medicus | Reproduction | Elevated | Clusters | Maintenance | Loci | Counting | Ecoresponsive Daphnia pulex | BASIC BIOLOGICAL SCIENCES
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5. Full Text OrthoDB: A hierarchical catalog of animal, fungal and bacterial orthologs
by Waterhouse, Robert M and Tegenfeldt, Fredrik and Li, Jia and Zdobnov, Evgeny M and Kriventseva, Evgenia V
Nucleic acids research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D358 - D365
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Genes, Bacterial | Genes | Humans | Molecular Sequence Annotation | Synteny | Databases, Genetic | Phylogeny | Phenotype | Animals | Genes, Fungal | Mice | Internet | Cluster Analysis | Evolution, Molecular | Index Medicus
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6. Full Text BUSCO applications from quality assessments to gene prediction and phylogenomics
by Waterhouse, Robert M and Seppey, Mathieu and Simao, Felipe A and Manni, Mosè and Ioannidis, Panagiotis and Klioutchnikov, Guennadi and Kriventseva, Evgenia V and Zdobnov, Evgeny M
Molecular biology and evolution, ISSN 0737-4038, 2018, Volume 35, Issue 3, pp. 543 - 548
Metagenomics | Evolution | Transcriptomics | Bioinformatics | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Index Medicus | transcriptomics | Fast Track | evolution | metagenomics | bioinformatics
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7. Full Text OrthoDB v9.1: Cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
by Zdobnov, Evgeny M and Tegenfeldt, Fredrik and Kuznetsov, Dmitry and Waterhouse, Robert M and Simao, Felipe A and Ioannidis, Panagiotis and Seppey, Mathieu and Loetscher, Alexis and Kriventseva, Evgenia V
Nucleic acids research, ISSN 0305-1048, 01/2017, Volume 45, Issue 1, pp. D744 - D749
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | User-Computer Interface | Computational Biology - methods | Viruses - genetics | Molecular Sequence Annotation | Databases, Genetic | Bacteria - genetics | Fungi - genetics | Algorithms | Animals | Plants - genetics | Archaea - genetics | Software | Genomics - methods | Web Browser | Evolution, Molecular | Index Medicus | Database Issue
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8. Full Text OrthoDB: the hierarchical catalog of eukaryotic orthologs
by Kriventseva, Evgenia V and Rahman, Nazim and Espinosa, Octavio and Zdobnov, Evgeny M
Nucleic acids research, ISSN 0305-1048, 1/2008, Volume 36, Issue suppl_1, pp. D271 - D275
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | User-Computer Interface | Animals | Vertebrates - genetics | Genomics | Proteomics | Databases, Genetic | Internet | Phylogeny | Insecta - genetics | Fungi - genetics | Index Medicus
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9. Full Text OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
by Kriventseva, Evgenia V and Kuznetsov, Dmitry and Tegenfeldt, Fredrik and Manni, Mosè and Dias, Renata and Simão, Felipe A and Zdobnov, Evgeny M
Nucleic acids research, ISSN 0305-1048, 01/2019, Volume 47, Issue D1, pp. D807 - D811
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Genome, Plant - genetics | Genome, Viral - genetics | Molecular Sequence Annotation | Databases, Genetic | Phylogeny | Genetic Variation | Genome, Bacterial - genetics | Animals | Eukaryota - genetics | Genome, Fungal - genetics | Software | Genomics - trends | Evolution, Molecular | Index Medicus | Database Issue
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10. Full Text OrthoDB v8: Update of the hierarchical catalog of orthologs and the underlying free software
by Kriventseva, Evgenia V and Tegenfeldt, Fredrik and Petty, Tom J and Waterhouse, Robert M and Simão, Felipe A and Pozdnyakov, Igor A and Ioannidis, Panagiotis and Zdobnov, Evgeny M
Nucleic acids research, ISSN 0305-1048, 01/2015, Volume 43, Issue 1, pp. D250 - D256
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Homology | Algorithms | Animals | Eukaryota - genetics | Data Curation | Humans | Databases, Genetic | Software | Evolution, Molecular | Genome, Microbial | Index Medicus | Database Issue
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