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science & technology (74) 74
basic biological sciences (62) 62
life sciences & biomedicine (54) 54
genomics (47) 47
fungi (44) 44
genomes (42) 42
phylogeny (35) 35
microbiology (33) 33
genes (32) 32
life sciences (32) 32
genetics & heredity (29) 29
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genetic aspects (22) 22
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enzymes (18) 18
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genome (16) 16
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mycology (13) 13
physiological aspects (13) 13
evolution, molecular (12) 12
research article (12) 12
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biodegradation (11) 11
biotechnology (11) 11
comparative genomics (11) 11
fungal genomics (11) 11
phylogenetics (11) 11
sequence analysis, dna (11) 11
human genome (10) 10
lignin (10) 10
molecular sequence data (10) 10
proteins (10) 10
ascomycota (9) 9
comparative analysis (9) 9
eukaryotes (9) 9
food and beverages (9) 9
fungal (9) 9
species (9) 9
basidiomycota - genetics (8) 8
biological evolution (8) 8
biology (8) 8
genome, fungal - genetics (8) 8
lignin - metabolism (8) 8
lignocellulose (8) 8
polysaccharides (8) 8
short genome reports (8) 8
analysis (7) 7
bacteria (7) 7
base sequence (7) 7
biochemistry, molecular biology (7) 7
bioinformatics (7) 7
biological and medical sciences (7) 7
biotechnology & applied microbiology (7) 7
cellulose (7) 7
chromosomes (7) 7
complex mixtures (7) 7
dna, fungal - genetics (7) 7
ecology (7) 7
fundamental and applied biological sciences. psychology (7) 7
genetic research (7) 7
metabolism (7) 7
species specificity (7) 7
symbiosis (7) 7
[sdv.bibs]life sciences [q-bio]/quantitative methods [q-bio.qm] (6) 6
aspergillus (6) 6
biochemistry & molecular biology (6) 6
biologi (6) 6
biomass (6) 6
fungal proteins (6) 6
fungal proteins - genetics (6) 6
geba (6) 6
gene expression regulation, fungal (6) 6
laboratories (6) 6
mycorrhizae - genetics (6) 6
natural sciences (6) 6
naturvetenskap (6) 6
technology, industry, and agriculture (6) 6
09 biomass fuels (5) 5
bacteriology (5) 5
basidiomycota - classification (5) 5
biochemistry and cell biology (5) 5
cazyme (5) 5
cell walls (5) 5
computational biology (5) 5
deoxyribonucleic acid--dna (5) 5
dna (5) 5
environmental sciences (5) 5
fungal genetics (5) 5
glycoside hydrolases (5) 5
health aspects (5) 5
humans (5) 5
infectious diseases (5) 5
metabolites (5) 5
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1. Full Text The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
by Dimitrios Flundas and Manfred Binder and Robert Riley and Kerrie Barry and Robert A. Blanchette and Bernard Henrissat and Angel T. Martínez and Robert Otillar and Joseph W. Spatafora and Jagjit S. Yadav and Andrea Aerts and Isabelle Benoit and Alex Boyd and Alexis Carlson and Alex Copeland and Pedro M. Coutinho and Ronald P. de Vries and Patricia Ferreira and Keisha Findley and Brian Foster and Jill Gaskell and Dylan Glotzer and Paweł Górecki and Joseph Heitman and Cedar Hesse and Chiaki Hori and Kiyohiko Igarashi and Joel A. Jurgens and Nathan Kallen and Phil Kersten and Annegret Kohler and Ursula Kües and T. K. Arun Kumar and Alan Kuo and Kurt LaButti and Luis F. Larrondo and Erika Lindquist and Albee Ling and Vincent Lombard and Susan Lucas and Taina Lundell and Rachael Martin and David J. McLaughlin and Ingo Morgenstern and Emanuelle Morin and Claude Murat and Laszlo G. Nagy and Matt Nolan and Robin A. Ohm and Aleksandrina Patyshakuliyeva and Antonis Rokas and Francisco J. Ruiz-Dueñas and Grzegorz Sabat and Asaf Salamov and Masahiro Samejima and Jeremy Schmutz and Jason C. Slot and Franz St. John and Jan Stenlid and Hui Sun and Sheng Sun and Khajamohiddin Syed and Adrian Tsang and Ad Wiebenga and Darcy Young and Antonio Pisabarro and Daniel C. Eastwood and Francis Martin and Dan Cullen and Igor V. Grigoriev and David S. Hibbett and Joint Genome Institute (JGI)
Science (American Association for the Advancement of Science), ISSN 0036-8075, 6/2012, Volume 336, Issue 6089, pp. 1715 - 1719
Lignin | Biological taxonomies | Enzymes | Mycology | REPORTS | Chrysosporium | Evolution | Genomes | Fungal genomes | Phylogeny | Bioinformatics | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Biological evolution | Lignin - metabolism | Genome, Fungal | Basidiomycota - enzymology | Basidiomycota - classification | Bayes Theorem | Basidiomycota - genetics | Peroxidases - metabolism | Indoles | Peroxidases - genetics | Wood - metabolism | Evolution, Molecular | Fungi | Biodegradation | Physiological aspects | Genetic aspects | Research | Index Medicus | Genes | Decomposition | Sampling | Dating | Life Sciences
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2. Full Text The Plant Cell Wall—Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
by Daniel C. Eastwood and Dimitrios Floudas and Manfred Binder and Andrzej Majcherczyk and Patrick Schneider and Andrea Aerts and Fred O. Asiegbu and Scott E. Baker and Kerrie Barry and Mika Bendiksby and Melanie Blumentritt and Pedro M. Coutinho and Dan Cullen and Ronald P. de Vries and Allen Gathman and Barry Goodell and Bernard Henrissat and Katarina Ihrmark and Hävard Kauserud and Annegret Kohler and Kurt LaButti and Alla Lapidus and José L. Lavin and Yong-Hwan Lee and Erika Lindquist and Walt Lilly and Susan Lucas and Emmanuelle Morin and Claude Murat and José A. Oguiza and Jongsun Park and Antonio G. Pisabarro and Robert Riley and Anna Rosling and Asaf Salamov and Olaf Schmidt and Jeremy Schmutz and Inger Skrede and Jan Stenlid and Ad Wiebenga and Xinfeng Xie and Ursula Kües and David S. Hibbett and Dirk Hoffmeister and Nils Högberg and Francis Martin and Igor V. Grigoriev and Sarah C. Watkinson and Joint Genome Institute (JGI)
Science (American Association for the Advancement of Science), ISSN 0036-8075, 8/2011, Volume 333, Issue 6043, pp. 762 - 765
Fungi | Lignin | Enzymes | Coniferous forests | Placenta | Databases | Boreal forests | REPORTS | Brown rot fungi | Genomes | Forest soils | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Economic plant physiology | Forestry | Biological and medical sciences | Soil science | Agronomy. Soil science and plant productions | Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) | Coriolaceae - genetics | Basidiomycota - physiology | Biota | Genomics | Gene Expression Profiling | Mycorrhizae - physiology | Phylogeny | Biodiversity | Magnoliopsida - microbiology | Lignin - metabolism | Basidiomycota - enzymology | Basidiomycota - classification | Peroxidases - metabolism | Genes, Fungal | Wood - microbiology | Coriolaceae - enzymology | Symbiosis | Oxidoreductases - metabolism | Oxidoreductases - genetics | Coriolaceae - physiology | Proteome | Wood - metabolism | Coniferophyta - microbiology | Biological Evolution | Mycorrhizae - enzymology | Mycorrhizae - genetics | Cell Wall - metabolism | Basidiomycota - genetics | Trees - microbiology | Peroxidases - genetics | Physiological aspects | Genetic aspects | Research | Basidiomycota | Trees | Plant pathology | Proteomics | Index Medicus | Adaptations | Life Sciences
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3. Full Text Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
by Suzuki, H and Macdonald, J and Syed, K and Salamov, A and Hori, C and Aerts, A and Henrissat, B and Wiebenga, A and vanKuyk, P.A and Barry, K and Lindquist, E and LaButti, K and Lapidus, A and Lucas, S and Coutinho, P and Gong, Y and Samejima, M and Mahadevan, R and Abou-Zaid, M and de Vries, R.P and Igarashi, K and Yadav, J.S and Grigoriev, I.V and Master, E.R and Joint Genome Institute (JGI)
BMC genomics, ISSN 1471-2164, 2012, Volume 13, Issue 1, pp. 444 - 444
hanerochaete chrysosporium | Comparative genomics | Softwood degradation | Phanerochaete carnosa | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Phanerochaete - genetics | Genome, Fungal - genetics | Glycoside Hydrolases - genetics | Phanerochaete - enzymology | Wood - microbiology | Polyporaceae - enzymology | Fungal Proteins - genetics | Genomics - methods | Polyporaceae - genetics | Fungal Proteins - metabolism | Fungi | Enzymes | Lignin | Analysis | Genes | Genomics | Genetic research | Genomes | Biodegradation | Microbiology | Colleges & universities | Index Medicus | Phanerochaete chrysosporium
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4. Full Text Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
by Gregory, Ann C and Solonenko, Sergei A and Ignacio-Espinoza, J.Cesar and LaButti, Kurt and Copeland, Alex and Sudek, Sebastian and Maitland, Ashley and Chittick, Lauren and dos Santos, Filipa and Weitz, Joshua S and Worden, Alexandra Z and Woyke, Tanja and Sullivan, Matthew B and Argonne National Laboratory, Argonne, IL (United States). Advanced Photon Source (APS) and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
BMC genomics, ISSN 1471-2164, 11/2016, Volume 17, Issue 1, pp. 930 - 930
Virus | Double-stranded DNA | Evolution | Bacteriophage | Species | Cyanophage | Phage | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genome, Viral | Metagenomics | DNA, Viral - isolation & purification | DNA, Viral - metabolism | Host Specificity | DNA - metabolism | Phylogeny | Sequence Analysis, DNA | Biological Evolution | DNA, Viral - chemistry | Bacteriophages - classification | Comparative Genomic Hybridization | Bacteriophages - genetics | Gene Transfer, Horizontal - genetics | Genetic Linkage | Eukaryotes | Genetic aspects | Research | Genetic recombination | Cyanobacteria | Index Medicus | BASIC BIOLOGICAL SCIENCES
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5. Full Text Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
by Kohler, Annegret and Kuo, Alan and Nagy, Laszlo G and Morin, Emmanuelle and Barry, Kerrie W and Buscot, Francois and Canbäck, Björn and Choi, Cindy and Cichocki, Nicolas and Clum, Alicia and Colpaert, Jan and Copeland, Alex and Costa, Mauricio D and Doré, Jeanne and Floudas, Dimitrios and Gay, Gilles and Girlanda, Mariangela and Henrissat, Bernard and Herrmann, Sylvie and Hess, Jaqueline and Högberg, Nils and Johansson, Tomas and Khouja, Hassine-Radhouane and Labutti, Kurt and Lahrmann, Urs and Levasseur, Anthony and Lindquist, Erika A and Lipzen, Anna and Marmeisse, Roland and Martino, Elena and Murat, Claude and Ngan, Chew Y and Nehls, Uwe and Plett, Jonathan M and Pringle, Anne and Ohm, Robin A and Perotto, Silvia and Peter, Martina and Riley, Robert and Rineau, Francois and Ruytinx, Joske and Salamov, Asaf and Shah, Firoz and Sun, Hui and Tarkka, Mika and Tritt, Andrew and Veneault-Fourrey, Claire and Zuccaro, Alga and Tunlid, Anders and Grigoriev, Igor V and Hibbett, David S and Martin, Francis and Mycorrhizal Genomics Initiative Co and Mycorrhizal Genomics Initiative Consortium and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division
Nature genetics, ISSN 1061-4036, 04/2015, Volume 47, Issue 4, pp. 410 - 415
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Mycorrhizae - pathogenicity | Selection, Genetic | Molecular Sequence Data | Plant Diseases - microbiology | Phylogeny | Plant Roots - microbiology | Symbiosis - genetics | Mycorrhizae - genetics | Genome, Fungal - genetics | Virulence - genetics | Base Sequence | Gene Deletion | Plant Diseases - genetics | Gene Expression Regulation, Fungal - genetics | Evolution, Molecular | Mycorrhizas | Genetic research | Evolutionary genetics | Genetic aspects | Research | Trees | Fungi | Symbiosis | Enzymes | Lignin | Lignocellulose | Laboratories | Genes | Genomics | Cellulose | Genomes | Index Medicus | BASIC BIOLOGICAL SCIENCES
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6. Full Text Widespread adenine N6-methylation of active genes in fungi
by Mondo, Stephen J and Dannebaum, Richard O and Kuo, Rita C and Louie, Katherine B and Bewick, Adam J and LaButti, Kurt and Haridas, Sajeet and Kuo, Alan and Salamov, Asaf and Ahrendt, Steven R and Lau, Rebecca and Bowen, Benjamin P and Lipzen, Anna and Sullivan, William and Andreopoulos, Bill B and Clum, Alicia and Lindquist, Erika and Daum, Christopher and Northen, Trent R and Kunde-Ramamoorthy, Govindarajan and Schmitz, Robert J and Gryganskyi, Andrii and Culley, David and Magnuson, Jon and James, Timothy Y and O'Malley, Michelle A and Stajich, Jason E and Spatafora, Joseph W and Visel, Axel and Grigoriev, Igor V and Univ. of California, Santa Barbara, CA (United States) and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Nature genetics, ISSN 1061-4036, 06/2017, Volume 49, Issue 6, pp. 964 - 968
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Gene Expression Regulation, Fungal | DNA Methylation | 5-Methylcytosine - metabolism | Genome, Fungal | Epigenesis, Genetic | Transcription Initiation Site | Adenine - metabolism | Phylogeny | Fungi - genetics | Fungi | Genetic research | Models | Genetic aspects | Research | Gene expression | Correlation | Plant pathology | Transcription | Laboratories | Genes | Genomics | Algae | Colleges & universities | Adenine | Genomes | Biology | Gene sequencing | Eukaryotes | DNA methylation | Phylogenetics | Clusters | Scientific imaging | Methylation | Bioinformatics | Mass spectrometry | Deoxyribonucleic acid--DNA | Index Medicus | BASIC BIOLOGICAL SCIENCES
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7. Full Text Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome
by Wayne S. Kontur and Wendy S. Schackwitz and Natalia Ivanova and Joel Martin and Kurt LaButti and Shweta Deshpande and Hope N. Tice and Christa Pennacchio and Erica Sodergren and George M. Weinstock and Daniel R. Noguera and Timothy J. Donohue and Great Lakes Bioenergy Research Center (GLBRC)
Journal of Bacteriology, ISSN 0021-9193, 12/2012, Volume 194, Issue 24, pp. 7016 - 7017
Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Genome, Bacterial | DNA, Bacterial - genetics | Molecular Sequence Annotation | Plasmids - genetics | Molecular Sequence Data | Rhodobacter sphaeroides - genetics | Polymorphism, Single Nucleotide | Chromosomes, Bacterial | Sequence Analysis, DNA | Genetic aspects | Research | Bacterial genetics | Plasmids | Bacteria, Photosynthetic | Bacteria | Genomes | Chromosomes | Index Medicus | Genome Announcements
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8. Full Text A comparative genomics study of 23 Aspergillus species from section Flavi
by Kjaerbolling, Inge and Vesth, Tammi and Frisvad, Jens C and Nybo, Jane L and Theobald, Sebastian and Kildgaard, Sara and Petersen, Thomas Isbrandt and Kuo, Alan and Sato, Atsushi and Lyhne, Ellen K and Kogle, Martin E and Wiebenga, Ad and Kun, Roland S and Lubbers, Ronnie J. M and Makela, Miia R and Barry, Kerrie and Chovatia, Mansi and Clum, Alicia and Daum, Chris and Haridas, Sajeet and He, Guifen and LaButti, Kurt and Lipzen, Anna and Mondo, Stephen and Pangilinan, Jasmyn and Riley, Robert and Salamov, Asaf and Simmons, Blake A and Magnuson, Jon K and Henrissat, Bernard and Mortensen, Uffe H and Larsen, Thomas O and de Vries, Ronald P and Grigoriev, Igor V and Machida, Masayuki and Baker, Scott E and Andersen, Mikael R and Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States) and USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States) and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Nature communications, ISSN 2041-1723, 02/2020, Volume 11, Issue 1, pp. 1106 - 1106
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Multigene Family | DNA, Fungal - genetics | Secondary Metabolism - genetics | Genomics | Carbohydrate Metabolism - genetics | Crops, Agricultural - microbiology | Fungal Proteins - genetics | Phylogeny | Fermentation | Plant Diseases - prevention & control | Aspergillus flavus - enzymology | Metabolic Networks and Pathways - genetics | Phenotype | Aspergillus oryzae - genetics | Aspergillus oryzae - enzymology | Genome, Fungal - genetics | Aspergillus flavus - genetics | Aspergillus oryzae - classification | Bioreactors | Aspergillus flavus - classification | Fermented Foods and Beverages | Fungal Proteins - metabolism | Biodegradation | Phenotypes | Gene clusters | Fermented food | Food production | Genomes | Genetic diversity | Fungi | Species diversity | Polysaccharides | Secondary metabolites | Metabolites | Species classification | Mycotoxins | Species | Food | Index Medicus | Section Flavi | Aspergillus | BASIC BIOLOGICAL SCIENCES | miyakamide | CAZyme | Comparative Genomics | Secondary Metabolism aflatoxin
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9. Full Text Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
by Alla Lapidus and Alicia Clum and Kurt LaButti and Marina G. Kaluzhnaya and Sujung Lim and David A. C. Beck and Tijana Glavina del Rio and Matt Nolan and Konstantinos Mavromatis and Marcel Huntemann and Susan Lucas and Mary E. Lidstrom and Natalia Ivanova and Ludmila Chistoserdova and Joint Genome Institute (JGI)
Journal of Bacteriology, ISSN 0021-9193, 08/2011, Volume 193, Issue 15, pp. 3757 - 3764
Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Methanol - metabolism | Fresh Water - microbiology | Genome, Bacterial | Methylophilaceae - classification | Methylophilaceae - metabolism | Methylophilaceae - genetics | Molecular Sequence Data | Methylophilaceae - isolation & purification | Evolution, Molecular | Methylotrophs | Microbial metabolism | Physiological aspects | Genomes | Genetic aspects | Research | Bacterial genetics | Niche (Ecology) | Genetics | Comparative analysis | Metabolism | Bacterial proteins | Index Medicus | Genomics and Proteomics
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