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1. Full Text Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children
by Hong, Xiumei and Hao, Ke and Ladd-Acosta, Christine and Hansen, Kasper D and Tsai, Hui-Ju and Liu, Xin and Xu, Xin and Thornton, Timothy A and Caruso, Deanna and Keet, Corinne A and Sun, Yifei and Wang, Guoying and Luo, Wei and Kumar, Rajesh and Fuleihan, Ramsay and Singh, Anne Marie and Kim, Jennifer S and Story, Rachel E and Gupta, Ruchi S and Gao, Peisong and Chen, Zhu and Walker, Sheila O and Bartell, Tami R and Beaty, Terri H and Fallin, M. Daniele and Schleimer, Robert and Holt, Patrick G and Nadeau, Kari Christine and Wood, Robert A and Pongracic, Jacqueline A and Weeks, Daniel E and Wang, Xiaobin
Nature communications, ISSN 2041-1723, 2015, Volume 6, Issue 1, pp. 6304 - 6304
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Peanut Hypersensitivity - genetics | Genetic Predisposition to Disease | Genome-Wide Association Study | United States | Epigenesis, Genetic | Humans | Child, Preschool | Infant | Male | HLA-DR Antigens - genetics | Young Adult | DNA Methylation | Phenotype | HLA-DQ Antigens - genetics | Adolescent | Female | Polymorphism, Single Nucleotide | Child | Index Medicus
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2. The role of epigenetics in genetic and environmental epidemiology
by Ladd-Acosta, Christine and Fallin, M Daniele
Epigenomics, ISSN 1750-1911, 02/2016, Volume 8, Issue 2, pp. 271 - 283
epidemiology | epigenomics | genomics | environmental epidemiology | genetic epidemiology | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genetic Predisposition to Disease | Disease Susceptibility | Epigenomics - methods | Epigenesis, Genetic | Humans | Biomarkers | Environment | Environmental Exposure | Epidemiology | Gene-Environment Interaction
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3. Full Text Invited Commentary: Is DNA Methylation an Actionable Mediator of Prenatal Exposure Effects on Child Health?
by Ladd-Acosta, Christine and Fallin, M Daniele
American journal of epidemiology, ISSN 0002-9262, 11/2019, Volume 188, Issue 11, pp. 1887 - 1889
Life Sciences & Biomedicine | Public, Environmental & Occupational Health | Science & Technology | Pregnancy | DNA Methylation | Prenatal Exposure Delayed Effects | Placenta | Humans | Female | Child Health | Child | Birth Weight - genetics | Smoking | Low-birth-weight | DNA methylation | Measurement methods | Birth weight | Exposure | Prenatal experience | Mediation | Deoxyribonucleic acid--DNA | Weight | Index Medicus
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4. Full Text The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
by Ji, Hong and Potash, James B and Feinberg, Andrew P and Sabunciyan, Sarven and Wen, Bo and Irizarry, Rafael A and Onyango, Patrick and Montano, Carolina and Gabo, Kevin and Ladd-Acosta, Christine and Wu, Zhijin and Cui, Hengmi and Webster, Maree and Rongione, Michael
Nature genetics, ISSN 1061-4036, 02/2009, Volume 41, Issue 2, pp. 178 - 186
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Gastroenterology. Liver. Pancreas. Abdomen | Stomach. Duodenum. Small intestine. Colon. Rectum. Anus | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Medical sciences | Tumors | Colonic Neoplasms - genetics | Oligonucleotide Array Sequence Analysis | DNA Modification Methylases - antagonists & inhibitors | HCT116 Cells | Humans | Gene Expression Regulation, Neoplastic | Chromosome Mapping | Gene Expression Profiling | Colonic Neoplasms - metabolism | Organ Specificity - genetics | Colonic Neoplasms - pathology | Conserved Sequence | CpG Islands - genetics | Carcinoma - genetics | Carcinoma - metabolism | Carcinoma - pathology | DNA Methylation - physiology | Genome, Human | Gene Silencing - physiology | Colon cancer | DNA | Physiological aspects | Genetic aspects | Research | Methylation | Risk factors | Spleen | Medical research | Brain | Databases | Genomics | Colorectal cancer | Genetics | Gene expression | Tissues | Deoxyribonucleic acid--DNA | Index Medicus | Medicin och hälsovetenskap
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5. Full Text Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
by Wen, Bo and Ladd-Acosta, Christine and Feinberg, Andrew P and Rho, Junsung and Schlaeger, Thorsten and Daley, George Q and Murakami, Peter and Miller, Justine and Doi, Akiko and Aryee, Martin J and Herb, Brian and Park, In-Hyun and Irizarry, Rafael and Loewer, Sabine
Nature genetics, ISSN 1061-4036, 12/2009, Volume 41, Issue 12, pp. 1350 - 1353
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Embryonic Stem Cells - metabolism | Embryonic Stem Cells - cytology | Epigenesis, Genetic | Humans | Gene Expression Profiling | DNA Methylation | Neoplasms - genetics | CpG Islands - genetics | Cell Differentiation | Fibroblasts - cytology | Induced Pluripotent Stem Cells - cytology | Fibroblasts - metabolism | Induced Pluripotent Stem Cells - metabolism | DNA damage | Physiological aspects | Fibroblasts | Genetic aspects | Research | Embryonic stem cells | Cancer | Studies | Stem cells | Colorectal cancer | Genetics | Tissues | Deoxyribonucleic acid--DNA | Binding sites | Index Medicus | Medicin och hälsovetenskap
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6. Full Text The Evolving Field of Genetic Epidemiology: From Familial Aggregation to Genomic Sequencing
by Duggal, Priya and Ladd-Acosta, Christine and Ray, Debashree and Beaty, Terri H
American journal of epidemiology, ISSN 0002-9262, 12/2019, Volume 188, Issue 12, pp. 2069 - 2077
Life Sciences & Biomedicine | Public, Environmental & Occupational Health | Science & Technology | Genomics - trends | Molecular Epidemiology - trends | Statistical analysis | Genes | Health risks | Genomes | Ribonucleic acid--RNA | Risk analysis | Gene expression | Epidemiology | Environmental risk | Risk factors | Population levels | Heterogeneity | Genotyping | Etiology | Information processing | Genetics | Risk management | Public health | Index Medicus | genomics | Epidemiology in History | genome-wide study designs | omics | public health genetics | genetic epidemiology
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7. Full Text Prognostic and Predictive Gene Signature for Adjuvant Chemotherapy in Resected Non–Small-Cell Lung Cancer
by Chang-Qi Zhu and Keyue Ding and Dan Strumpf and Barbara A. Weir and Matthew Meyerson and Nathan Pennell and Roman K. Thomas and Katsuhiko Naoki and Christine Ladd-Acosta and Ni Liu and Melania Pintilie and Sandy Der and Lesley Seymour and Igor Jurisica and Frances A. Shepherd and Ming-Sound Tsao
Journal of clinical oncology, ISSN 0732-183X, 10/2010, Volume 28, Issue 29, pp. 4417 - 4424
Life Sciences & Biomedicine | Oncology | Science & Technology | Tumors of the respiratory system and mediastinum | Biological and medical sciences | Medical sciences | Tumors | Pneumology | Lung Neoplasms - genetics | Lung Neoplasms - drug therapy | Predictive Value of Tests | Carcinoma, Non-Small-Cell Lung - surgery | Prognosis | Oligonucleotide Array Sequence Analysis | Carcinoma, Non-Small-Cell Lung - genetics | Humans | Middle Aged | Male | Treatment Outcome | Gene Expression Profiling | Vinblastine - administration & dosage | Reverse Transcriptase Polymerase Chain Reaction | Cisplatin - administration & dosage | Vinblastine - analogs & derivatives | Antineoplastic Combined Chemotherapy Protocols - therapeutic use | Survival Analysis | Female | Lung Neoplasms - surgery | Aged | Carcinoma, Non-Small-Cell Lung - drug therapy | Chemotherapy, Adjuvant | Gene Expression Regulation, Neoplastic - drug effects | Index Medicus | Thor9 | To2 | To4 | Original Reports | Thor2 | Thor12 | Thor5 | To20
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8. Full Text Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
by Aryee, Martin J and Jaffe, Andrew E and Corrada-Bravo, Hector and Ladd-Acosta, Christine and Feinberg, Andrew P and Hansen, Kasper D and Irizarry, Rafael A
Bioinformatics, ISSN 1367-4803, 5/2014, Volume 30, Issue 10, pp. 1363 - 1369
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Colonic Neoplasms - genetics | DNA Methylation | Algorithms | Oligonucleotide Array Sequence Analysis - methods | Humans | Aged | Polymorphism, Single Nucleotide | Software | Genome | High-Throughput Nucleotide Sequencing - methods | Index Medicus | Original Papers | Medicin och hälsovetenskap
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9. Full Text Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study
by Jurisica, Igor and Eschrich, Steven and Tsao, Ming-Sound and Meyerson, Matthew and Zakowski, Maureen and Seymour, Lesley and Verhaak, Roel and Gerald, William L and Kris, Mark and Kuick, Rork and Gruidl, Michael and Sharma, Anupama and Naoki, Katsuhiko and Shedden, Kerby and Dobbin, Kevin K and Motoi, Noriko and Strumpf, Daniel and Weir, Barbara and Ladd-Acosta, Christine and Jacobson, James W and Golub, Todd and Travis, William and Enkemann, Steven A and Hanash, Samir and Szoke, Janos and Giordano, Thomas J and Chang, Andrew C and Lively, Tracy and Misek, David E and Conley, Barbara and Ding, Keyue and Pennell, Nathan and Yeatman, Timothy J and Taylor, Jeremy M G and Beer, David G and Rusch, Valerie and Zhu, Chang Qi and Viale, Agnes and Seshan, Venkatraman E and Shepherd, Frances A and Director's Challenge Consortium Mo and Director's Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma
Nature medicine, ISSN 1078-8956, 08/2008, Volume 14, Issue 8, pp. 822 - 827
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Oligonucleotide Array Sequence Analysis | Lung Neoplasms - mortality | Humans | Lung Neoplasms - metabolism | Middle Aged | Gene Expression Regulation, Neoplastic | Male | Risk | Treatment Outcome | Gene Expression Profiling | Models, Statistical | Adenocarcinoma - metabolism | Algorithms | Female | ROC Curve | Aged | Adenocarcinoma - mortality | Usage | DNA microarrays | Lung cancer | Adjuvant treatment | Reports | Genetic aspects | Research | Metastasis | Gene expression | Health aspects | Cancer | Clinical trials | Medical research | Survival analysis | Validation studies | Index Medicus
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