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Structure, ISSN 0969-2126, 2006, Volume 14, Issue 10, pp. 1527 - 1534
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 08/2014, Volume 10, Issue 8, pp. 3177 - 3189
Terminal base pairs of DNA and RNA molecules in solution are known to undergo frequent transient opening events (fraying). Accurate modeling of this process is... 
AMBER FORCE-FIELD | MECHANISM | PROTON-EXCHANGE | QUADRUPLEX DNA | STABILITY | SEQUENCE | RESOLUTION | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | THERMODYNAMIC PARAMETERS | NUCLEIC-ACIDS | DODECAMER
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 4/2008, Volume 36, Issue 7, pp. 2379 - 2394
We present a systematic study of B-DNA flexibility in aqueous solution using long-scale molecular dynamics simulations with the two more recent versions of... 
EXCISION-REPAIR | HUMAN GENOME | EMPIRICAL FORCE-FIELD | RNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | PARTICLE MESH EWALD | SIMULATIONS | UNIQUE TETRANUCLEOTIDE SEQUENCES | TRANSCRIPTION START SITES | NUCLEIC-ACIDS | Models, Molecular | DNA - chemistry | Software | Nucleic Acid Conformation | Base Sequence | Computer Simulation | Structural Biology
Journal Article
09/2006, Challenges and advances in computational chemistry and physics, ISBN 9781402047947, Volume 2, 647
Reviews the entire modern field of DNA/RNA computationsFully integrated approach. 
RNA | DNA | Biochemical genetics | Theoretical and Computational Chemistry | Chemistry | Math. Applications in Chemistry | Organic Chemistry | Computer Applications in Chemistry
eBook
Wiley Interdisciplinary Reviews: Computational Molecular Science, ISSN 1759-0876, 07/2013, Volume 3, Issue 4, pp. 355 - 363
Journal Article
Journal Article
Journal Article
Biochemistry, ISSN 0006-2960, 11/2013, Volume 52, Issue 45, pp. 8115 - 8125
Apurinic/apyrimidinic (AP) sites constitute the most frequent form of DNA damage. They have proven to produce oxidative interstrand cross-links, but the... 
OXIDATION | REPLICATION | MECHANISM | PERFORMANCE | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONFORMATION | SIMULATIONS | TANDEM LESIONS | RADIATION | DUPLEX DNA | HYDROGEN-BONDS | DNA - chemistry | Hydrogen Bonding | Base Pairing - genetics | DNA Damage - genetics | Cytosine - chemistry | Nucleic Acid Conformation | Adenine - chemistry | DNA damage | Research
Journal Article
Biochemistry, ISSN 0006-2960, 02/2015, Volume 54, Issue 5, pp. 1259 - 1267
Oxidatively generated complex DNA lesions occur more rarely than single-nucleotide defects, yet they play an important role in carcinogenesis and aging... 
CIS-SYN | REPAIR | REPLICATION | ABASIC SITES | RECOGNITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | THYMINE | GUANINE | BINDING | HYDROGEN-BONDS | DUPLEX DNA | Oligonucleotides - chemistry | DNA - chemistry | Oxidation-Reduction | Molecular Dynamics Simulation | Molecular dynamics | Research | Structure | DNA | Oligonucleotides | Index Medicus | Life Sciences | Chemical Sciences | Cancer
Journal Article
Biophysical Journal, ISSN 0006-3495, 02/2016, Volume 110, Issue 4, pp. 874 - 876
A recent study described an allosteric effect in which the binding of a protein to DNA is influenced by another protein bound nearby. The effect shows a... 
MODULATION | BIOPHYSICS | DNA - chemistry | Nucleic Acid Conformation | Allosteric Regulation | Molecular Dynamics Simulation | Proteins | Usage | Analysis | DNA | Force and energy | Molecular dynamics | Genetic research | Chemical properties | Investigations | Protein binding | Biophysical Letter
Journal Article