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1. Proteomics in cancer research
by Liebler, Daniel C
2005, ISBN 9780471444756, xii, 201
Research | Methodology | Tumor proteins | Proteomics | Cancer
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2. Proteomics
: an introduction to the new biology
by Liebler, Daniel C
2002, ISBN 0896039919, ix, 198
Proteins | Research | Methodology | Recherche | Méthodologie | Protéines
Book
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3. Full Text Abstract SY44-01: Proteogenomic analysis of human colon and rectal cancer
by Liebler, Daniel C
Cancer Research, ISSN 0008-5472, 08/2015, Volume 75, Issue 15 Supplement, pp. SY44-01 - SY44-01
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4. Introduction to proteomics
: tools for the new biology
by Liebler, Daniel C
2002, ISBN 0896039929, ix, 198
Proteins -- Research -- Methodology
Book
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5. Full Text Abstract 2398: Tumor cell-adipocyte gap junctions activate lipolysis in breast cancer
by Camarda, Roman and Williams, Jeremy and Malkov, Serghei and Zimmerman, Lisa J and Manning, Suzanne and Aran, Dvir and Beardsley, Andrew and Mark, Daniel Van de and Haren, Jeffrey van and Chen, Yong and Berdan, Charles and Louie, Sharon and Mahieu, Celine and Winkler, Juliane and Willey, Elizabeth and Gagnon, John D and Shinoda, Kosaku and Ansel, K. Mark and Werb, Zena and Nomura, Daniel C and Kajimura, Shingo and Wittmann, Torsten and Butte, Atul J and Sanders, Melinda E and Liebler, Daniel C and Krings, Gregor and Shepherd, John A and Goga, Andrei
Cancer Research, ISSN 0008-5472, 07/2018, Volume 78, Issue 13 Supplement, pp. 2398 - 2398
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6. Full Text Diverse redoxome reactivity profiles of carbon nucleophile
by Gupta, Vinayak and Yang, Jing and Liebler, Daniel C and Carroll, Kate S
Journal of the American Chemical Society, ISSN 0002-7863, 04/2017, Volume 139, Issue 15, p. 5588
Cysteine | Analysis | Ligands | Oxidation-reduction reaction | Chemical properties | Drug discovery | Research | Nucleophiles
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7. Full Text Proteogenomic characterization of human colon and rectal cancer
by Zhang, Bing and Zhang, Bing and Wang, Jing and Wang, Jing and Wang, Xiaojing and Wang, Xiaojing and Zhu, Jing and Zhu, Jing and Liu, Q and Liu, Qi and Shi, Zhiao and Shi, Zhiao and Chambers, Matthew C and Chambers, Matthew C and Zimmerman, Lisa J and Zimmerman, Lisa J and Shaddox, Kent F and Shaddox, Kent F and Kim, Sangtae and Kim, Sangtae and Davies, Sherri R and Davies, Sherri R and Wang, Sean and Wang, Sean and Wang, Pei and Wang, Pei and Kinsinger, Christopher R and Kinsinger, Christopher R and Rivers, Robert C and Rivers, Robert C and Rodriguez, Henry and Rodriguez, Henry and Townsend, R. Reid and Townsend, R Reid and Ellis, Matthew J. C and Ellis, Matthew J C and Carr, Steven A and Carr, Steven A and Tabb, David L and Tabb, David L and Coffey, Robert J and Coffey, Robert J and Slebos, Robbert J C and Slebos, Robbert J. C and Liebler, Daniel C and Liebler, Daniel C and NCI CPTAC, CPTAC and Gillette, Michael A and Klauser, Karl R and Kuhn, Eric and Mani, D.R and Mertins, Philipp and Ketchum, Karen A and Paulovich, Amanda G and Whiteaker, Jeffrey R and Edwards, Nathan J and McGarvey, Peter B and Madhavan, Subha and Chan, Daniel and Pandey, Akhilesh and Shih, Ie-Ming and Zhang, Hui and Zhang, Zhen and Zhu, Heng and Whiteley, Gordon A and Skates, Steven J and White, Forest M and Levine, Douglas A and Boja, Emily S and Hiltke, Tara and Mesri, Mehdi and Shaw, Kenna M and Stein, Stephen E and Fenyo, David and Liu, Tao and McDermott, Jason E and Payne, Samuel H and Rodland, Karin D and Smith, Richard D and Rudnick, Paul and Snyder, Michael and Zhao, Yingming and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew N and Sanders, Melinda E and Wang, Yue and Ding, Li and NCI CPTAC and the NCI CPTAC
Nature, ISSN 0028-0836, 2014, Volume 513, Issue 7518, pp. 382 - 387
Extensive genomic characterization of human cancers presents the problem of inference from genomic abnormalities to cancer phenotypes. To address this problem,... 
ANALYSIS REVEALS | GENE | PEPTIDE IDENTIFICATION | COLORECTAL-CANCER | MULTIDISCIPLINARY SCIENCES | PROTEIN EXPRESSION | PROTEOMIC ANALYSIS | HNF4-ALPHA | RNA-SEQ DATA | MASS-SPECTROMETRY | ABUNDANCE | Colonic Neoplasms - genetics | Proteome - genetics | Genomics | Humans | RNA, Messenger - analysis | Neoplasm Proteins - metabolism | RNA, Messenger - metabolism | RNA, Neoplasm - metabolism | Colonic Neoplasms - metabolism | Mutation, Missense - genetics | Mitochondrial Membrane Transport Proteins - genetics | Point Mutation - genetics | DNA Methylation | RNA, Neoplasm - analysis | Rectal Neoplasms - genetics | Neoplasm Proteins - genetics | RNA, Messenger - genetics | DNA Copy Number Variations - genetics | Hepatocyte Nuclear Factor 4 - genetics | Transcriptome - genetics | Proteome - analysis | Microsatellite Repeats - genetics | Proto-Oncogene Proteins pp60(c-src) - genetics | Proteomics | CpG Islands - genetics | RNA, Neoplasm - genetics | Neoplasm Proteins - analysis | Rectal Neoplasms - metabolism | Proteome - metabolism | Chromosomes, Human, Pair 20 - genetics | Care and treatment | Colon cancer | RNA | Analysis | Colorectal cancer | Genetic aspects | Methylation | Proteins | Peptides | Genes | Colon | Mass spectrometry | Tumors | Cancer | Index Medicus
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8. Full Text Efficient Microscale Basic Reverse Phase Peptide Fractionation for Global and Targeted Proteomics
by Lee, Hyoung-Joo and Kim, Hye-Jung and Liebler, Daniel C
Journal of Proteome Research, ISSN 1535-3893, 07/2016, Volume 15, Issue 7, pp. 2346 - 2354
Analysis of small biological samples would benefit from an efficient microscale fractionation strategy that minimizes sample handling, transfer steps, and... 
iTRAQ | drug resistance | protein tyrosine kinase | parallel reaction monitoring | basic reverse-phase liquid chromatography | label-free quantitation | QUANTIFICATION | QUANTITATION | BIOCHEMICAL RESEARCH METHODS | HIGH PH | CHROMATOGRAPHY | COMBINATION | FASP | PROTEINS | Lung Neoplasms - drug therapy | Gene Expression - drug effects | Chromatography, Reverse-Phase - methods | Humans | Proteome - drug effects | Lung Neoplasms - pathology | Chromatography, Reverse-Phase - standards | Chemical Fractionation | Erlotinib Hydrochloride - pharmacology | Cell Line, Tumor | Neoplasm Proteins - analysis | Miniaturization | Proteomics - methods | Drug Resistance | Index Medicus
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9. Full Text Abstract LB-056: Quantitative mass spectrometry analysis of immune checkpoint protein expression and N-glycosylation in human melanoma
by Betanzos, Carlos Morales and Lee, Hyoungjoo and Ericsson, Paula I. Gonzalez and Balko, Justin M and Johnson, Douglas B and Zimmerman, Lisa J and Liebler, Daniel C
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. LB-056 - LB-056
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10. Full Text Safety Assessment of Rosmarinus officinalis (Rosemary)-Derived Ingredients as Used in Cosmetics
by Fiume, Monice M and Bergfeld, Wilma F and Belsito, Donald V and Hill, Ronald A and Klaassen, Curtis D and Liebler, Daniel C and Marks, James G and Shank, Ronald C and Slaga, Thomas J and Snyder, Paul W and Gill, Lillian J and Heldreth, Bart
International Journal of Toxicology, ISSN 1091-5818, 11/2018, Volume 37, Issue 3_suppl, pp. 12S - 50S
The Cosmetic Ingredient Review Expert Panel (Panel) assessed the safety of 10 Rosmarinus officinalis (rosemary)-derived ingredients and concluded these... 
rosemary | safety | Rosmarinus officinalis | cosmetics | ALLERGIC CONTACT-DERMATITIS | CARNOSIC ACID | SKIN TUMORIGENESIS | LEAVES | INHIBITION | ANTIOXIDANT | CHEMICAL-COMPOSITION | PHARMACOLOGY & PHARMACY | TOXICOLOGY | L. ESSENTIAL OIL | EXTRACT
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11. Full Text Safety Assessment of Pentaerythrityl Tetra-Di-t-Butyl Hydroxyhydrocinnamate as Used in Cosmetics
by Johnson, Wilbur and Bergfeld, Wilma F and Belsito, Donald V and Hill, Ronald A and Klaassen, Curtis D and Liebler, Daniel C and Marks, James G and Shank, Ronald C and Slaga, Thomas J and Snyder, Paul W and Gill, Lillian J and Heldreth, Bart
International Journal of Toxicology, ISSN 1091-5818, 11/2018, Volume 37, Issue 3_suppl, pp. 80S - 89S
Pentaerythrityl tetra-di-t-butyl hydroxyhydrocinnamate functions as an antioxidant in cosmetic products and is used at concentrations up to 0.8%. Given the... 
pentaerythrityl tetra-di-t-butyl hydroxyhydrocinnamate | safety | cosmetics | PHARMACOLOGY & PHARMACY | TOXICOLOGY
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12. Full Text Safety Assessment of Barium Sulfate as Used in Cosmetics
by Johnson, Wilbur and Bergfeld, Wilma F and Belsito, Donald V and Hill, Ronald A and Klaassen, Curtis D and Liebler, Daniel C and Marks, James G and Shank, Ronald C and Slaga, Thomas J and Snyder, Paul W and Gill, Lillian J and Heldreth, Bart
International Journal of Toxicology, ISSN 1091-5818, 11/2018, Volume 37, Issue 3_suppl, pp. 5S - 11S
The Cosmetic Ingredient Review (CIR) Expert Panel (Panel) reviewed the safety of barium sulfate, which functions as an opacifying agent in cosmetic products... 
barium sulfate | safety | cosmetics | RAT | INHALATION | PHARMACOLOGY & PHARMACY | TOXICOLOGY | RADIOPACIFIERS
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13. Full Text Abstract 2000: Proteomic features of histological compartments in colorectal carcinoma
by Slebos, Robbert JC and Zimmerman, Lisa J and Manning, Suzanne and Sanders, Melinda E and Shi, Chanjuan and Washington, M Kay and Liebler, Daniel C
Cancer Research, ISSN 0008-5472, 08/2015, Volume 75, Issue 15 Supplement, pp. 2000 - 2000
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14. Full Text Erratum: Quantitative profiling of protein tyrosine kinases in human cancer cell lines by multiplexed parallel reaction monitoring assays (Molecular and Cellular Proteomics 14 DOI: 10.1074/mcp.A115.051813)
by Kim, Hye-Jung and Lin, De and Li, Ming and Liebler, Daniel C
Molecular and Cellular Proteomics, ISSN 1535-9476, 12/2015, Volume 14, Issue 12, p. 3310
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15. Full Text WITHDRAWN: Quantitative mass spectrometry analysis of PD-L1 protein expression, N-glycosylation and expression stoichiometry with PD-1 and PD-L2 in human melanoma
by Morales-Betanzos, Carlos A and Lee, Hyoungjoo and Gonzalez-Ericsson, Paula I and Balko, Justin M and Johnson, Douglas B and Zimmerman, Lisa J and Liebler, Daniel C
Molecular & cellular proteomics : MCP, ISSN 1535-9476, 04/2017, p. mcp.M117.067942
This article has been withdrawn by the authors. We discovered an error after this manuscript was published as a Paper in Press. Specifically, we learned that... 
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16. Full Text Redox instability induced by 4-hydroxy-2-nonenal in porcine and bovine myoglobins at pH 5.6 and 4 degrees C
by Suman, SP and Faustman, C and Stamer, SL and Liebler, DC
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, ISSN 0021-8561, 05/2006, Volume 54, Issue 9, pp. 3402 - 3408
Myoglobin (Mb) redox stability affects meat color and is compromised by lipid oxidation products such as 4-hydroxy-2-nonenal (HNE). Pork lipids are generally... 
VITAMIN-E | LIPID-PEROXIDATION | FOOD SCIENCE & TECHNOLOGY | ALPHA,BETA-UNSATURATED ALDEHYDES | DIETARY SUPPLEMENTATION | OXYMYOGLOBIN OXIDATION | ALPHA-TOCOPHEROL | lipid oxidation | FATTY-ACIDS | myoglobin | CYTOCHROME-C-OXIDASE | AGRICULTURE, MULTIDISCIPLINARY | mass spectrometry | TANDEM MS DATA | CHEMISTRY, APPLIED | 4-hydroxy-2-nonenal | PEROXIDATION-DERIVED ALDEHYDE | Animals | Oxidation-Reduction | Cattle | Swine | Aldehydes - pharmacology | Drug Stability | Myoglobin - chemistry | Myoglobin - drug effects | Hydrogen-Ion Concentration | Index Medicus
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17. Full Text Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells
by Le, Anne and Lane, Andrew N and Hamaker, Max and Bose, Sminu and Gouw, Arvin and Barbi, Joseph and Tsukamoto, Takashi and Rojas, Camilio J and Slusher, Barbara S and Zhang, Haixia and Zimmerman, Lisa J and Liebler, Daniel C and Slebos, Robbert J.C and Lorkiewicz, Pawel K and Higashi, Richard M and Fan, Teresa W.M and Dang, Chi V
Cell Metabolism, ISSN 1550-4131, 01/2012, Volume 15, Issue 1, pp. 110 - 121
Because MYC plays a causal role in many human cancers, including those with hypoxic and nutrient-poor tumor microenvironments, we have determined the metabolic... 
GLYCOLYSIS | LUNG-CANCER | ISOTOPE-RESOLVED METABOLOMICS | MITOCHONDRIAL BIOGENESIS | GROWTH | ENDOCRINOLOGY & METABOLISM | C-MYC | CANCER METABOLISM | CARBOXYLATION | HYPOXIA | DEHYDROGENASE | CELL BIOLOGY | B-Lymphocytes - cytology | Cell Proliferation | Oxidation-Reduction | Cell Survival | Humans | Glutamine - metabolism | Glutaminase - metabolism | Glutaminase - antagonists & inhibitors | Cell Hypoxia | B-Lymphocytes - immunology | Malates - metabolism | Cell Line, Tumor | Fumarates - metabolism | Glucose - metabolism | Isotope Labeling | Citric Acid - metabolism | Citric Acid Cycle - physiology | Carbon Isotopes - chemistry | B-Lymphocytes - metabolism | Sulfides - pharmacology | Thiadiazoles - pharmacology | Medical colleges | Lactates | Tracers (Biology) | Analysis | Environmental law | Physiological aspects | Lymphomas | Glucose | Dextrose | Glutamine | Index Medicus | Glucose-independent glutamine-dependent TCA cycle | metabolism of survival
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18. Full Text Proteomic Aanalysis of DNA-protein cross-linking by antitumor nitrogen mustards
by Loeber, Rachel L and Michaelson-Richie, Erin D and Codreanu, Simona G and Liebler, Daniel C and Campbell, Colin R and Tretyakova, Natalia Y
Chemical Research in Toxicology, ISSN 0893-228X, 06/2009, Volume 22, Issue 6, pp. 1151 - 1162
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19. Full Text Recommendations for the generation, quantification, storage, and handling of peptides used for mass spectrometry-based assays
by Hoofnagle, Andrew N and Whiteaker, Jeffrey R and Carr, Steven A and Kuhn, Eric and Liu, Tao and Massoni, Sam A and Thomas, Stefani N and Reid Townsend, R and Zimmerman, Lisa J and Boja, Emily and Chen, Jing and Crimmins, Daniel L and Davies, Sherri R and Gao, Yuqian and Hiltke, Tara R and Ketchum, Karen A and Kinsinger, Christopher R and Mesri, Mehdi and Meyer, Matthew R and Qian, Wei-Jun and Schoenherr, Regine M and Scott, Mitchell G and Shi, Tujin and Whiteley, Gordon R and Wrobel, John A and Wu, Chaochao and Ackermann, Brad L and Aebersold, Ruedi and Barnidge, David R and Bunk, David M and Clarke, Nigel and Fishman, Jordan B and Grant, Russ P and Kusebauch, Ulrike and Kushnir, Mark M and Lowenthal, Mark S and Moritz, Robert L and Neubert, Hendrik and Patterson, Scott D and Rockwood, Alan L and Rogers, John and Singh, Ravinder J and Van Eyk, Jennifer E and Wong, Steven H and Zhang, Shucha and Chan, Daniel W and Chen, Xian and Ellis, Matthew J and Liebler, Daniel C and Rodland, Karin D and Rodriguez, Henry and Smith, Richard D and Zhang, Zhen and Zhang, Hui and Paulovich, Amanda G and Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)
Clinical Chemistry, ISSN 0009-9147, 01/2016, Volume 62, Issue 1, pp. 48 - 69
BACKGROUND: For many years, basic and clinical researchers have taken advantage of the analytical sensitivity and specificity afforded by mass spectrometry in... 
PERFORMANCE LIQUID-CHROMATOGRAPHY | INTERNAL STANDARD | LC-MS/MS | PROTEIN QUANTIFICATION | PROTEOTYPIC PEPTIDES | MEDICAL LABORATORY TECHNOLOGY | AMINO-ACID-ANALYSIS | QUANTITATIVE BIOANALYSIS | ISOTOPE-DILUTION | PROTEOMICS | PREDICTION | Specimen Handling | Guidelines as Topic | Peptides - isolation & purification | Research Personnel | Clinical Laboratory Techniques | Humans | Mass Spectrometry | Proteomics | Peptides - analysis | Proteins | Medical laboratories | Proteolysis | Mass spectrometry | Chemical properties | Analysis | Medical research | Reference materials | Peptides | Laboratories | Funding | Calibration | 21st century | Quality standards | Researchers | Scientific imaging | Methods | Cancer | Index Medicus | Environmental Molecular Sciences Laboratory | peptide | lc-ms | calibrators | ms | mass spectrometry | reference material | internal standards
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20. Full Text Safety Assessment of Tripeptide-1, Hexapeptide-12, Their Metal Salts and Fatty Acyl Derivatives, and Palmitoyl Tetrapeptide-7 as Used in Cosmetics
by Johnson, Wilbur and Bergfeld, Wilma F and Belsito, Donald V and Hill, Ronald A and Klaassen, Curtis D and Liebler, Daniel C and Marks, James G and Shank, Ronald C and Slaga, Thomas J and Snyder, Paul W and Gill, Lillian J and Heldreth, Bart
International Journal of Toxicology, ISSN 1091-5818, 11/2018, Volume 37, Issue 3_suppl, pp. 90S - 102S
Tripeptide-1, Hexapeptide-12, their metal salts and fatty acyl derivatives, and Palmitoyl Tetrapeptide-7 function primarily as skin conditioning agents, and... 
safety | cosmetics | tripeptides | HISTIDYL-L-LYSINE | PLASMA | RAS | PHARMACOLOGY & PHARMACY | TOXICOLOGY | PROTEINS
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