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1. Full Text Proteogenomic characterization of human colon and rectal cancer
by Zhang, Bing and Zhang, Bing and Wang, Jing and Wang, Jing and Wang, Xiaojing and Wang, Xiaojing and Zhu, Jing and Zhu, Jing and Liu, Q and Liu, Qi and Shi, Zhiao and Shi, Zhiao and Chambers, Matthew C and Chambers, Matthew C and Zimmerman, Lisa J and Zimmerman, Lisa J and Shaddox, Kent F and Shaddox, Kent F and Kim, Sangtae and Kim, Sangtae and Davies, Sherri R and Davies, Sherri R and Wang, Sean and Wang, Sean and Wang, Pei and Wang, Pei and Kinsinger, Christopher R and Kinsinger, Christopher R and Rivers, Robert C and Rivers, Robert C and Rodriguez, Henry and Rodriguez, Henry and Townsend, R. Reid and Townsend, R Reid and Ellis, Matthew J. C and Ellis, Matthew J C and Carr, Steven A and Carr, Steven A and Tabb, David L and Tabb, David L and Coffey, Robert J and Coffey, Robert J and Slebos, Robbert J C and Slebos, Robbert J. C and Liebler, Daniel C and Liebler, Daniel C and NCI CPTAC, CPTAC and Gillette, Michael A and Klauser, Karl R and Kuhn, Eric and Mani, D.R and Mertins, Philipp and Ketchum, Karen A and Paulovich, Amanda G and Whiteaker, Jeffrey R and Edwards, Nathan J and McGarvey, Peter B and Madhavan, Subha and Chan, Daniel and Pandey, Akhilesh and Shih, Ie-Ming and Zhang, Hui and Zhang, Zhen and Zhu, Heng and Whiteley, Gordon A and Skates, Steven J and White, Forest M and Levine, Douglas A and Boja, Emily S and Hiltke, Tara and Mesri, Mehdi and Shaw, Kenna M and Stein, Stephen E and Fenyo, David and Liu, Tao and McDermott, Jason E and Payne, Samuel H and Rodland, Karin D and Smith, Richard D and Rudnick, Paul and Snyder, Michael and Zhao, Yingming and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew N and Sanders, Melinda E and Wang, Yue and Ding, Li and NCI CPTAC and the NCI CPTAC
Nature (London), ISSN 0028-0836, 2014, Volume 513, Issue 7518, pp. 382 - 387
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Colonic Neoplasms - genetics | Proteome - genetics | Genomics | Humans | RNA, Messenger - analysis | Neoplasm Proteins - metabolism | RNA, Messenger - metabolism | RNA, Neoplasm - metabolism | Colonic Neoplasms - metabolism | Mutation, Missense - genetics | Mitochondrial Membrane Transport Proteins - genetics | Point Mutation - genetics | DNA Methylation | RNA, Neoplasm - analysis | Rectal Neoplasms - genetics | Neoplasm Proteins - genetics | RNA, Messenger - genetics | DNA Copy Number Variations - genetics | Hepatocyte Nuclear Factor 4 - genetics | Transcriptome - genetics | Proteome - analysis | Microsatellite Repeats - genetics | Proto-Oncogene Proteins pp60(c-src) - genetics | Proteomics | CpG Islands - genetics | RNA, Neoplasm - genetics | Neoplasm Proteins - analysis | Rectal Neoplasms - metabolism | Proteome - metabolism | Chromosomes, Human, Pair 20 - genetics | Care and treatment | Colon cancer | RNA | Analysis | Colorectal cancer | Genetic aspects | Methylation | Proteins | Peptides | Genes | Colon | Mass spectrometry | Tumors | Cancer | Index Medicus
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2. Full Text Protein Damage by Reactive Electrophiles: Targets and Consequences
by Liebler, Daniel C
Chemical research in toxicology, ISSN 0893-228X, 01/2008, Volume 21, Issue 1, pp. 117 - 128
Physical Sciences | Toxicology | Chemistry | Life Sciences & Biomedicine | Pharmacology & Pharmacy | Chemistry, Medicinal | Chemistry, Multidisciplinary | Science & Technology | Animals | Signal Transduction - drug effects | Electrophoresis, Polyacrylamide Gel | Humans | Proteomics | Proteins - drug effects | Proteins - chemistry | Xenobiotics - toxicity | Immunochemistry | Index Medicus
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3. Full Text Neuronal preconditioning requires the mitophagic activity of C-terminus of HSC70-interacting protein
by Lizama, Britney N and Palubinsky, Amy M and Raveendran, Vineeth A and Moore, Annah M and Federspiel, Joel D and Codreanu, Simona G and Liebler, Daniel C and McLaughlin, Bethann
The Journal of neuroscience, ISSN 0270-6474, 08/2018, Volume 38, Issue 31, pp. 6825 - 6840
Mitochondria | E3 ubiquitin ligase | Ischemic preconditioning | HSP70 | Mitophagy | Autophagy | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Ubiquitin | Regulators | Animal models | Homeostasis | Fluorescence | Proteins | Bioenergetics | Neurodegeneration | Aging | Degeneration | Genotypes | Ubiquitin-protein ligase | Stresses | Phenotypes | Neurons | C-Terminus | Organelles | Stress | Mutants | Animals | Microscopy | PTEN-induced putative kinase | Hsc70 protein | Mutation | Preconditioning | PTEN protein | Chip protein | Phagocytosis | Index Medicus | ischemic preconditioning | mitophagy | autophagy | mitochondria
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4. Full Text Targeted Quantitation of Proteins by Mass Spectrometry
by Liebler, Daniel C and Zimmerman, Lisa J
Biochemistry (Easton), ISSN 0006-2960, 06/2013, Volume 52, Issue 22, pp. 3797 - 3806
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Tandem Mass Spectrometry | Reference Standards | Sensitivity and Specificity | Protein Processing, Post-Translational | Proteins - analysis | Software | Proteomics - methods | Mass Spectrometry - methods | Peptides - analysis | Measurement | Peptides | Analysis | Protein biosynthesis | Chemical properties | Research | Activation energy | Mass spectrometry | Index Medicus | Current Topic
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5. Full Text Proteome profiling outperforms transcriptome profiling for coexpression based gene function prediction
by Wang, Jing and Ma, Zihao and Carr, Steven A and Mertins, Philipp and Zhang, Hui and Zhang, Zhen and Chan, Daniel W and Ellis, Matthew J. C and Townsend, R. Reid and Smith, Richard D and McDermott, Jason E and Chen, Xian and Paulovich, Amanda G and Boja, Emily S and Mesri, Mehdi and Kinsinger, Christopher R and Rodriguez, Henry and Rodland, Karin D and Lieblerc, Daniel C and Zhang, Bing and Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)
Molecular & cellular proteomics, ISSN 1535-9476, 01/2017, Volume 16, Issue 1, pp. 121 - 134
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Neoplasms - metabolism | Oligonucleotide Array Sequence Analysis | Humans | Gene Expression Regulation, Neoplastic | Gene Expression Profiling - methods | Chromosome Mapping | Gene Regulatory Networks | Protein Interaction Maps | Algorithms | Neoplasms - genetics | Mass Spectrometry | Epithelial-Mesenchymal Transition | Proteomics - methods | Web Browser | Networks | Profiling | Mesenchyme | Genes | Modules | Data processing | Mass spectroscopy | Breast cancer | Genomes | Gene expression | ErbB-2 protein | Biological activity | Consortia | Proteins | Wiring | Complement activation | Proteomics | Mass spectrometry | Cancer | Index Medicus | Environmental Molecular Sciences Laboratory | BASIC BIOLOGICAL SCIENCES | Research
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6. Full Text Quantitative mass spectrometry analysis of PD-l1 protein expression, n-glycosylation and expression stoichiometry with PD-1 and PD-L2 in human melanoma
by Morales-Betanzos, Carlos A and Lee, Hyoungjoo and Gonzalez Ericsson, Paula I and Balko, Justin M and Johnson, Douglas B and Zimmerman, Lisa J and Liebler, Daniel C
Molecular & cellular proteomics, ISSN 1535-9476, 10/2017, Volume 16, Issue 10, pp. 1705 - 1717
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Melanoma - diagnosis | Humans | Middle Aged | Programmed Cell Death 1 Ligand 2 Protein - metabolism | Acetylglucosamine - analysis | Male | T-Lymphocytes - metabolism | Skin Neoplasms - diagnosis | Adult | Female | Melanoma - metabolism | Programmed Cell Death 1 Ligand 2 Protein - genetics | Programmed Cell Death 1 Receptor - metabolism | Glycosylation | B7-H1 Antigen - genetics | Polysaccharides - analysis | Mannose - analysis | Skin Neoplasms - metabolism | B7-H1 Antigen - metabolism | Biopsy | Aged | Protein Processing, Post-Translational | Mass Spectrometry - methods | Programmed Cell Death 1 Receptor - genetics | Cohort Studies | Immunohistochemistry | Stoichiometry | CD40 antigen | N-Acetylglucosamine | PD-1 protein | Mannose | Lymphocytes T | Paraffin | Proteins | Polysaccharides | Protein folding | Lymphocytes | Mortality | Melanoma | Abundance | Mass spectroscopy | L1 protein | Glycan | Immune checkpoint | Cell death | PD-L1 protein | Ligands | Mass spectrometry | Cancer | Apoptosis | Index Medicus | Research
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7. Full Text Site-specific mapping and quantification of protein S-sulphenylation in cells
by Yang, Jing and Gupta, Vinayak and Carroll, Kate S and Liebler, Daniel C
Nature communications, ISSN 2041-1723, 09/2014, Volume 5, Issue 1, pp. 4776 - 4776
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Gene Expression | Phosphorylation | Epithelial Cells - metabolism | Oxidation-Reduction | Hypoxia-Inducible Factor 1, alpha Subunit - genetics | Epithelial Cells - drug effects | Humans | Molecular Sequence Annotation | Hydrogen Peroxide - pharmacology | Sulfenic Acids - metabolism | Ubiquitination | Peptide Mapping | Hypoxia-Inducible Factor 1, alpha Subunit - metabolism | Cell Line, Tumor | Cysteine - metabolism | Protein Processing, Post-Translational | Acetylation | Epidermal Growth Factor - pharmacology | Epithelial Cells - cytology | Sirtuins - genetics | Sirtuins - metabolism | Index Medicus
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8. Full Text Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells
by Le, Anne and Lane, Andrew N and Hamaker, Max and Bose, Sminu and Gouw, Arvin and Barbi, Joseph and Tsukamoto, Takashi and Rojas, Camilio J and Slusher, Barbara S and Zhang, Haixia and Zimmerman, Lisa J and Liebler, Daniel C and Slebos, Robbert J.C and Lorkiewicz, Pawel K and Higashi, Richard M and Fan, Teresa W.M and Dang, Chi V
Cell metabolism, ISSN 1550-4131, 01/2012, Volume 15, Issue 1, pp. 110 - 121
Endocrinology & Metabolism | Life Sciences & Biomedicine | Science & Technology | Cell Biology | B-Lymphocytes - cytology | Cell Proliferation | Oxidation-Reduction | Cell Survival | Humans | Glutamine - metabolism | Glutaminase - metabolism | Glutaminase - antagonists & inhibitors | Cell Hypoxia | B-Lymphocytes - immunology | Malates - metabolism | Cell Line, Tumor | Fumarates - metabolism | Glucose - metabolism | Isotope Labeling | Citric Acid - metabolism | Citric Acid Cycle - physiology | Carbon Isotopes - chemistry | B-Lymphocytes - metabolism | Sulfides - pharmacology | Thiadiazoles - pharmacology | Medical colleges | Lactates | Tracers (Biology) | Analysis | Environmental law | Physiological aspects | Lymphomas | Glucose | Dextrose | Glutamine | Index Medicus | Glucose-independent glutamine-dependent TCA cycle | metabolism of survival
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