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Nature Biotechnology, ISSN 1087-0156, 2014, Volume 32, Issue 7, pp. 656 - 662
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 04/2010, Volume 38, Issue 12, pp. e132 - e132
We describe an algorithm for gene identification in DNA sequences derived from shotgun sequencing of microbial communities. Accurate ab initio gene prediction... 
SUBTILIS | DATABASE | GENOMES | GUT MICROBIOME | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | COMMUNITIES | THERMOTOGA-MARITIMA | CODON USAGE | PREDICTION | Genes, Bacterial | Genome, Bacterial | Genes, Archaeal | Genome, Archaeal | Humans | Metagenomics - methods | Gastrointestinal Tract - microbiology | Models, Statistical | Sequence Analysis, DNA | Algorithms | Animals | Mice | Metagenome | Methods Online
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2015, Volume 32, Issue 5, pp. 767 - 769
Motivation: Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PREDICTION | Software | Sequence Analysis, RNA | Eukaryota | RNA | Genome | Training | Tasks | Annotations | Genes | Genomes | Brakes | Bioinformatics | Assembly | Applications Notes
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 2014, Volume 42, Issue 15, pp. e119 - e119
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 08/2016, Volume 44, Issue 14, pp. 6614 - 6624
Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease... 
RESOURCES | DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | PAN-GENOME | CLASSIFICATION | MICROBIAL GENOMES | PREDICTION | Genes, Bacterial | Genome, Bacterial | Prokaryotic Cells - metabolism | Molecular Sequence Annotation | Bacterial Proteins - chemistry | Bacteria - genetics | Databases, Nucleic Acid | Computational Biology
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 2015, Volume 43, Issue 12, pp. e78 - e78
Journal Article
by Read, Betsy A and Kegel, Jessica and Klute, Mary J and Kuo, Alan and Lefebvre, Stephane C and Maumus, Florian and Mayer, Christoph and Miller, John and Monier, Adam and Salamov, Asaf and Young, Jeremy and Aguilar, Maria and Claverie, Jean-Michel and Frickenhaus, Stephan and Gonzalez, Karina and Herman, Emily K and Lin, Yao-Cheng and Napier, Johnathan and Ogata, Hiroyuki and Sarno, Analissa F and Shmutz, Jeremy and Schroeder, Declan and De Vargas, Colomban and Verret, Frederic and Von Dassow, Peter and Valentin, Klaus and Van De Peer, Yves and Wheeler, Glen and Dacks, Joel B and Delwiche, Charles F and Dyhrman, Sonya T and Glöckner, Gernot and John, Uwe and Richards, Thomas and Worden, Alexandra Z and Zhang, Xiaoyu and Grigoriev, Igor V and Allen, Andrew E and Bidle, Kay and Borodovsky, Mark and Bowler, Chris and Brownlee, Colin and Mark Cock, J and Elias, Marek and Gladyshev, Vadim N and Groth, Marco and Guda, Chittibabu and Hadaegh, Ahmad and Iglesias-Rodriguez, Maria Debora and Jenkins, Jerry and Jones, Bethan M and Lawson, Tracy and Leese, Florian and Lindquist, Erika and Lobanov, Alexei and Lomsadze, Alexandre and Malik, Shehre-Banoo and Marsh, Mary E and MacKinder, Luke and Mock, Thomas and Mueller-Roeber, Bernd and Pagarete, António and Parker, Micaela and Probert, Ian and Quesneville, Hadi and Raines, Christine and Rensing, Stefan A and Riaño-Pachón, Diego Mauricio and Richier, Sophie and Rokitta, Sebastian and Shiraiwa, Yoshihiro and Soanes, Darren M and Van Der Giezen, Mark and Wahlund, Thomas M and Williams, Bryony and Wilson, Willie and Wolfe, Gordon and Wurch, Louie L and Emiliania Huxleyi Annotation and Emiliania huxleyi Annotation Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 2013, Volume 499, Issue 7457, pp. 209 - 213
Journal Article
Genome Research, ISSN 1088-9051, 12/2008, Volume 18, Issue 12, pp. 1979 - 1990
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 06/2001, Volume 29, Issue 12, pp. 2607 - 2618
Improving the accuracy of prediction of gene starts is one of a few remaining open problems in computer prediction of prokaryotic genes. Its difficulty is... 
UNALIGNED DNA-SEQUENCES | MARKOV-MODELS | PROTEIN-CODING REGIONS | RECOGNITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI K-12 | TRANSLATION INITIATION | EUKARYOTES | IDENTIFICATION | ARCHAEON | PROKARYOTES
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2010, Volume 107, Issue 26, pp. 11889 - 11894
The mushroom Coprinopsis cinerea is a classic experimental model for multicellular development in fungi because it grows on defined media, completes its life... 
Fungi | Datasets | Cold regions | Transposons | Genes | Genomics | Evolution | Genomes | Chromosomes | Basidiomycota | Basidiomycete | Meiotic recombination | Gene families | Kinase | Dikaryon formation | meiotic recombination | basidiomycete | kinase | CAENORHABDITIS-ELEGANS | gene families | DNA | MULTIDISCIPLINARY SCIENCES | HEMIASCOMYCETE YEASTS | dikaryon formation | SYNAPTONEMAL COMPLEX-FORMATION | GENOME | Gene Duplication | Multigene Family | Protein Kinases - genetics | Coprinus - cytology | Molecular Sequence Data | Chromosome Mapping | DNA Primers - genetics | Fungal Proteins - genetics | Phylogeny | Retroelements - genetics | Meiosis - genetics | Coprinus - genetics | Coprinus - growth & development | Chromosomes, Fungal - genetics | Genome, Fungal | Recombination, Genetic | Base Sequence | Cytochrome P-450 Enzyme System - genetics | RNA, Fungal - genetics | Evolution, Molecular | Chromosome mapping | Evolutionary biology | Mushrooms | Meiosis | Genetic aspects | Research | Methods | Natural history | Retrotransposons | Recombination | Transformation | Transcription | Synteny | Gene expression | Basidiocarps | Mating | Morphogenesis | Life cycle | DNA microarrays | Developmental stages | Protein kinase | Dikaryons | Models | Mutation | hydrophobins | Biological Sciences | recombination | Naturvetenskap | Biologi | Natural Sciences | meiotic
Journal Article
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 7, p. e22728
Cucumber (Cucumis sativus L.), a widely cultivated crop, has originated from Eastern Himalayas and secondary domestication regions includes highly divergent... 
REGULATORY-ELEMENTS | EUKARYOTIC GENOMES | BAC LIBRARY | TRANSCRIPTION FACTOR-BINDING | ARABIDOPSIS-THALIANA | MITOCHONDRIAL GENOME | MULTIDISCIPLINARY SCIENCES | GENE PREDICTION | SOMATIC EMBRYOGENESIS | SACCHAROMYCES-CEREVISIAE | CHROMOSOMAL REARRANGEMENTS | Adaptation, Physiological | Genes, Plant | Regulatory Sequences, Nucleic Acid | Chromosome Mapping | Cucumis sativus - genetics | Genome, Plant | Promoter Regions, Genetic - genetics | Sequence Analysis, DNA | Chromosomes, Artificial, Bacterial | Gene Expression Regulation, Plant | Polymerase Chain Reaction | Chromosomes, Plant - genetics | DNA, Plant - genetics | Evolution, Molecular | Arabidopsis thaliana | Ecosystems | Analysis | Genes | Genomics | Abscisic acid | Genetic research | Evolution | Genomes | Plants | Gene expression | Adaptations | Biotechnology | Ammonium | Horticulture | Biological evolution | Identification | Regulatory sequences | Dehydration | Chromosome rearrangements | Biodiversity | Freezing | Data bases | Information sources | Proteins | Engineering | Landscape architecture | Cold tolerance | Genetics | Life sciences | Bioinformatics | Sugar | Deoxyribonucleic acid--DNA | Biomedical engineering | Adaptation | Cultivars | Biodegradation | Plants (botany) | Chlorophyll | Nucleotide sequence | Crops | Domestication | Metabolism | Promoters | Seedlings | Environmental conditions | Molecular modelling | Acids | Software upgrading | Photosynthesis | Comparative analysis | Deoxyribonucleic acid | DNA
Journal Article