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index medicus (8) 8
mass spectrometry (7) 7
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human gut microbiota (2) 2
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methyl jasmonate (2) 2
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microbiology (2) 2
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plant proteins - genetics (2) 2
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zantedeschia - genetics (2) 2
zantedeschia - metabolism (2) 2
16s rrna sequencing (1) 1
[sdv.ee]life sciences [q-bio]/ecology, environment (1) 1
acetates - metabolism (1) 1
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acquired-resistance (1) 1
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animal models (1) 1
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1. Full Text Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
by Wang, Mingxun and Carver, Jeremy J and Phelan, Vanessa V and Sanchez, Laura M and Garg, Neha and Peng, Yao and Nguyen, Don Duy and Watrous, Jeramie and Kapono, Clifford A and Luzzatto-Knaan, Tal and Porto, Carla and Bouslimani, Amina and Melnik, Alexey V and Meehan, Michael J and Liu, Wei-Ting and Crüsemann, Max and Boudreau, Paul D and Esquenazi, Eduardo and Sandoval-Calderón, Mario and Kersten, Roland D and Pace, Laura A and Quinn, Robert A and Duncan, Katherine R and Hsu, Cheng-Chih and Floros, Dimitrios J and Gavilan, Ronnie G and Kleigrewe, Karin and Northen, Trent and Dutton, Rachel J and Parrot, Delphine and Carlson, Erin E and Aigle, Bertrand and Michelsen, Charlotte F and Jelsbak, Lars and Sohlenkamp, Christian and Pevzner, Pavel and Edlund, Anna and McLean, Jeffrey and Piel, Jörn and Murphy, Brian T and Gerwick, Lena and Liaw, Chih-Chuang and Yang, Yu-Liang and Humpf, Hans-Ulrich and Maansson, Maria and Keyzers, Robert A and Sims, Amy C and Johnson, Andrew R and Sidebottom, Ashley M and Sedio, Brian E and Klitgaard, Andreas and Larson, Charles B and Boya, Cristopher A.P and Torres-Mendoza, Daniel and Gonzalez, David J and Silva, Denise B and Marques, Lucas M and Demarque, Daniel P and Pociute, Egle and O'Neill, Ellis C and Briand, Enora and Helfrich, Eric J. N and Granatosky, Eve A and Glukhov, Evgenia and Ryffel, Florian and Houson, Hailey and Mohimani, Hosein and Kharbush, Jenan J and Zeng, Yi and Vorholt, Julia A and Kurita, Kenji L and Charusanti, Pep and McPhail, Kerry L and Nielsen, Kristian Fog and Vuong, Lisa and Elfeki, Maryam and Traxler, Matthew F and Engene, Niclas and Koyama, Nobuhiro and Vining, Oliver B and Baric, Ralph and Silva, Ricardo R and Mascuch, Samantha J and Tomasi, Sophie and Jenkins, Stefan and Macherla, Venkat and Hoffman, Thomas and Agarwal, Vinayak and Williams, Philip G and Dai, Jingqui and Neupane, Ram and Gurr, Joshua and Rodríguez, Andrés M. C and Lamsa, Anne and Zhang, Chen and Dorrestein, Kathleen and Duggan, Brendan M and Almaliti, Jehad and Allard, Pierre-Marie and Phapale, Prasad and ...
Nature Biotechnology, ISSN 1087-0156, 09/2016, Volume 34, Issue 8, pp. 828 - 837
The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not... 
METABOLOMICS | GENE-CLUSTER | DEREPLICATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | REPOSITORY | IDENTIFICATION | EXTRACTS | GENOME | DISCOVERY | RESOURCE | Mass Spectrometry - statistics & numerical data | Biological Products - chemistry | Biological Products - classification | Information Storage and Retrieval - methods | Databases, Chemical | Internationality | Database Management Systems | Information Dissemination - methods | Data Curation - methods | Electronic data processing | Natural products | Chemical research | Molecular dynamics | Research | Chemical properties | Mass spectrometry | Methods | Biotechnology | Life Sciences | Ecology, environment
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2. Full Text Priming of protein expression in the defence response of Zantedeschia aethiopica to Pectobacterium carotovorum
by Luzzatto‐Knaan, Tal and Kerem, Zohar and Doron‐Faigenboim, Adi and Yedidia, Iris
Molecular Plant Pathology, ISSN 1464-6722, 05/2014, Volume 15, Issue 4, pp. 364 - 378
Summary The defence response of Zantedeschia aethiopica, a natural rhizomatous host of the soft rot bacterium Pectobacterium carotovorum, was studied following... 
SOFT-ROT | PLANT IMMUNITY | METHYL JASMONATE | SALICYLIC-ACID | POLYPHENOL OXIDASE | SPP. ARACEAE | INDUCED SYSTEMIC RESISTANCE | SUBSP-CAROTOVORA | DISEASE RESISTANCE | TOMATO | PLANT SCIENCES | Plant Proteins - genetics | Gene Expression Regulation, Plant - physiology | Zantedeschia - genetics | Gene Expression Regulation, Plant - genetics | Zantedeschia - microbiology | Plant Diseases - genetics | Plant Diseases - microbiology | Zantedeschia - metabolism | Plant Proteins - metabolism | Pectobacterium carotovorum - physiology | Binding proteins | Protein binding | Proteins | Enzymes | Medical research | Protein expression
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3. Full Text Mass spectrometry tools and workflows for revealing microbial chemistry
by Luzzatto-Knaan, Tal and Melnik, Alexey V and Dorrestein, Pieter C
Analyst, ISSN 0003-2654, 02/2015, Volume 140, Issue 15, pp. 4949 - 4966
Since the time Van Leeuwenhoek was able to observe microbes through a microscope, an innovation that led to the birth of the field of microbiology, we have... 
SECONDARY METABOLITES | CHEMISTRY, ANALYTICAL | ROUTINE IDENTIFICATION | GENE-CLUSTER | DESORPTION IONIZATION-TIME | NATURAL-PRODUCTS | MOLECULAR NETWORKING | DRUG DISCOVERY | SPATIALLY-RESOLVED ANALYSIS | METABOLIC EXCHANGE | RAPID IDENTIFICATION | Bacteria - chemistry | Bacterial Infections - drug therapy | Fungi - classification | Humans | Mycoses - microbiology | Bacterial Physiological Phenomena | Workflow | Fungi - chemistry | Drug Discovery | Equipment Design | Mass Spectrometry - instrumentation | Fungi - physiology | Mycoses - drug therapy | Bacteria - classification | Mass Spectrometry - methods | Microbial Interactions | Bacterial Infections - microbiology
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4. Full Text Mass spectrometry tools and workflows for revealing microbial chemistry
by Luzzatto-Knaan, Tal and Melnik, Alexey V and Dorrestein, Pieter C
The Analyst, ISSN 0003-2654, 2015, Volume 140, Issue 15, pp. 4949 - 4966
Since the time Van Leeuwenhoek was able to observe microbes through a microscope, an innovation that led to the birth of the field of microbiology, we have... 
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5. Full Text Mass Spectrometry Uncovers the Role of Surfactin as an Interspecies Recruitment Factor
by Luzzatto-Knaan, Tal and Melnik, Alexey V and Dorrestein, Pieter C
ACS Chemical Biology, ISSN 1554-8929, 03/2019, Volume 14, Issue 3, pp. 459 - 467
Microbes use metabolic exchange to sense and respond to their changing environment. Surfactins, produced by Bacillus subtilis, have been extensively studied... 
ORGANIZATION | BACILLUS-SUBTILIS | NATURAL-PRODUCTS | COMPETITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | GROWTH | RESISTANCE | ECOLOGY | BACTERIAL | BIOFILM FORMATION | Tandem Mass Spectrometry | Peptides, Cyclic - isolation & purification | Paenibacillus | Bacillus subtilis | Coculture Techniques | Cells, Cultured | Lipopeptides - isolation & purification | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization - methods | Chromatography, High Pressure Liquid | Bacterial Proteins - isolation & purification | Biological Products - isolation & purification
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6. Full Text The impact of skin care products on skin chemistry and microbiome dynamics
by Bouslimani, A and da Silva, R and Kosciolek, T and Janssen, S and Callewaert, C and Amir, A and Dorrestein, K and Melnik, AV and Zaramela, LS and Kim, JN and Humphrey, G and Schwartz, T and Sanders, K and Brennan, C and Luzzatto-Knaan, T and Ackermann, G and McDonald, D and Zengler, K and Knight, R and Dorrestein, PC
BMC BIOLOGY, ISSN 1741-7007, 06/2019, Volume 17, Issue 1, pp. 47 - 20
BackgroundUse of skin personal care products on a regular basis is nearly ubiquitous, but their effects on molecular and microbial diversity of the skin are... 
Metabolomics | PROPYLENE-GLYCOL | 16S rRNA sequencing | STABILITY | MOLECULAR NETWORKING | MASS-SPECTROMETRY | SOLUBILITY | MIXTURES | METABOLISM | Skin care products | BIOLOGY | Bacteria | INDIVIDUALITY | Skin | Mass spectrometry | RNA sequencing | Usage | rRNA 16S | Ecosystems | Consumer products | Microbiomes | Personal grooming | Mass spectroscopy | Lotions | Powder | Feet | Cosmetics industry | Ecosystem structure | Organic chemistry | Chemistry | Microorganisms | Microbiota | Deodorants | Scientific imaging | Steroids
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7. Full Text Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae
by Luzzatto-Knaan, Tal and Garg, Neha and Wang, Mingxun and Glukhov, Evgenia and Peng, Yao and Ackermann, Gail and Amir, Amnon and Duggan, Brendan M and Ryazanov, Sergey and Gerwick, Lena and Knight, Rob and Alexandrov, Theodore and Bandeira, Nuno and Gerwick, William H and Dorrestein, Pieter C
eLife, ISSN 2050-084X, 05/2017, Volume 6
Natural product screening programs have uncovered molecules from diverse natural sources with various biological activities and unique structures. However,... 
BIODIVERSITY | LYNGBYA-MAJUSCULA | GENE-CLUSTER | NATURAL-PRODUCTS | DRUG DISCOVERY | MOLECULAR NETWORKING | BIOLOGY | MOLLUSCICIDAL ACTIVITY | CYCLIC DEPSIPEPTIDES | PROTEASOME INHIBITORS | METABOLITE | Aquatic Organisms - classification | Computational Biology - methods | Cyanobacteria - classification | Cyanobacteria - chemistry | Mass Spectrometry | Microalgae - classification | Aquatic Organisms - chemistry | Biodiversity | Metabolomics - methods | Microalgae - chemistry | Algae | Cyanobacteria | Genetic aspects | Observations | Mass spectrometry | Methods | Biological diversity | Metabolomics | Data analysis | Laboratories | Mass spectroscopy | Chromatography | Computer science | Metabolites | Natural products | Dispersal | Data collection | Digitization | Scientific imaging | Collections | Cancer
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8. Natural products as mediators of disease
by Garg, Neha and Luzzatto-Knaan, Tal and Melnik, Alexey V and Caraballo-Rodriguez, Andres Mauricio and Floros, Dimitrios J and Petras, Daniel and Gregor, Rachel and Dorrestein, Pieter C and Phelan, Vanessa V
Natural Product Reports, ISSN 0265-0568, 02/2017, Volume 34, Issue 2, pp. 194 - 219
Covering: up to 2016 Humans are walking microbial ecosystems, each harboring a complex microbiome with the genetic potential to produce a vast array of natural... 
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9. Full Text Natural products as mediators of disease
by Garg, Neha and Luzzatto-Knaan, Tal and Melnik, Alexey V and Caraballo-Rodríguez, Andrés Mauricio and Floros, Dimitrios J and Petras, Daniel and Gregor, Rachel and Dorrestein, Pieter C and Phelan, Vanessa V
Natural Product Reports, ISSN 0265-0568, 2/2017, Volume 34, Issue 2, pp. 194 - 219
Covering: up to 2016 Humans are walking microbial ecosystems, each harboring a complex microbiome with the genetic potential to produce a vast array of natural... 
MYCOBACTERIUM-TUBERCULOSIS | CHEMISTRY, MEDICINAL | HEAT-STABLE ENTEROTOXIN | HUMAN GUT MICROBIOTA | BIOCHEMISTRY & MOLECULAR BIOLOGY | CHEMISTRY, ORGANIC | MASS-SPECTROMETRY | TRACHEAL CYTOTOXIN | CHAIN FATTY-ACIDS | CLOSTRIDIUM-DIFFICILE-INFECTION | BIOSYNTHETIC GENE CLUSTERS | PROPIONIBACTERIUM-ACNES | STAPHYLOCOCCUS-AUREUS | Biological Products - chemistry | Microbiota | Biological Products - pharmacology | Molecular Structure | Humans
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10. Full Text Creating a 3D microbial and chemical snapshot of a human habitat
by Kapono, CA and Morton, JT and Bouslimani, A and Melnik, AV and Orlinsky, K and Knaan, TL and Garg, N and Vazquez-Baeza, Y and Protsyuk, I and Janssen, S and Zhu, QY and Alexandrov, T and Smarr, L and Knight, R and Dorrestein, PC
SCIENTIFIC REPORTS, ISSN 2045-2322, 02/2018, Volume 8, Issue 1, pp. 3669 - 12
One of the goals of forensic science is to identify individuals and their lifestyle by analyzing the trace signatures left behind in built environments. Here,... 
FINGERPRINTS | MULTIDISCIPLINARY SCIENCES | MOLECULAR CARTOGRAPHY | PHONES | SELECTION | MASS-SPECTROMETRY | TOOLS | Computers | Mass spectroscopy | Lifestyles | Forensic science | Indoor environments | Microbiomes
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11. Full Text Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats
by Petras, Daniel and Nothias, Louis-Félix and Quinn, Robert A and Alexandrov, Theodore and Bandeira, Nuno and Bouslimani, Amina and Castro-Falcón, Gabriel and Chen, Liangyu and Dang, Tam and Floros, Dimitrios J and Hook, Vivian and Garg, Neha and Hoffner, Nicole and Jiang, Yike and Kapono, Clifford A and Koester, Irina and Knight, Rob and Leber, Christopher A and Ling, Tie-Jun and Luzzatto-Knaan, Tal and McCall, Laura-Isobel and McGrath, Aaron P and Meehan, Michael J and Merritt, Jonathan K and Mills, Robert H and Morton, Jamie and Podvin, Sonia and Protsyuk, Ivan and Purdy, Trevor and Satterfield, Kendall and Searles, Stephen and Shah, Sahil and Shires, Sarah and Steffen, Dana and White, Margot and Todoric, Jelena and Tuttle, Robert and Wojnicz, Aneta and Sapp, Valerie and Vargas, Fernando and Yang, Jin and Zhang, Chao and Dorrestein, Pieter C
Analytical Chemistry, ISSN 0003-2700, 11/2016, Volume 88, Issue 22, pp. 10775 - 10784
The cars we drive, the homes we live in, the restaurants we visit, and the laboratories and offices we work in are all a part of the modern human habitat.... 
CURRENCY | CHEMISTRY, ANALYTICAL | DATABASE | URBAN | INFORMATION | BANKNOTES | METABOLOMIC DATA | NETWORKING | COCAINE CONTAMINATION | EXPOSURE | RESOURCE | Tandem Mass Spectrometry | Ecosystem | Humans | Mass Spectrometry | Ions - analysis | Organic Chemicals - chemistry | Chromatography, Liquid | Organic Chemicals - analysis | Usage | Plasticizers | Liquid chromatography | Research | Mass spectrometry
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