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Mobile Genetic Elements, ISSN 2159-2543, 01/2016, Volume 6, Issue 1, p. e1137380
Researchers contest the importance of gene flow in bacterial core genomes, as traditionalists view microbes as predominantly clonal, asexually reproducing... 
gene flow | genetic diversity | experimental evolution | Escherichia coli | genome evolution | population genomics | microbiome | molecular evolution
Journal Article
Genetics, ISSN 0016-6731, 06/2015, Volume 200, Issue 2, pp. 619 - 631
Journal Article
Genetics, ISSN 0016-6731, 06/2015, Volume 200, Issue 2, pp. 619 - 619
Twelve replicate populations of Escherichia coli have been evolving in the laboratory for .25 years and 60,000 generations. We analyzed bacteria from... 
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 11/2015, Volume 32, Issue 11, pp. 2897 - 2904
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 11/2015, Volume 32, Issue 11, p. 2897
  Synonymous genetic differences vary by more than 20-fold among genes in natural isolates of Escherichia coli. One hypothesis to explain this heterogeneity is... 
Biological variation | E coli | Genes | Genomics | Evolution | Animal populations
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2011, Volume 28, Issue 3, pp. 1307 - 1317
The spontaneous deamination of cytosine produces uracil mispaired with guanine in DNA, which will produce a mutation, unless repaired. In all domains of life,... 
Deamination | Uracil-DNA glycosidase | Evolution | Evolutionary genetics | Cytosine | Genomes | Mutation rates | Phylogeny | Guanylate cyclase | DNA repair | Uracil | Guanine
Journal Article
01/2016, ISBN 9781339961415
My dissertation spans two dichotomies: evolution in the laboratory versus evolution in nature, and asexual versus sexual evolutionary dynamics. In Chapter 1 I... 
Evolution and Development
Dissertation
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 03/2011, Volume 28, Issue 3, p. 1307
The spontaneous deamination of cytosine produces uracil mispaired with guanine in DNA, which will produce a mutation, unless repaired. In all domains of life,... 
Genotype & phenotype | Phylogenetics | Bacteria | Genomes | Mutation | Comparative analysis | Deoxyribonucleic acid--DNA
Journal Article
Genome Biology and Evolution, ISSN 1759-6653, 2017, Volume 9, Issue 4, pp. 1072 - 1083
Journal Article
PloS one, 2016, Volume 11, Issue 1, p. e0147229
Next-generation DNA sequencing has revolutionized the study of biology. However, the short read lengths of the dominant instruments complicate assembly of... 
Haplotypes - genetics | Algorithms | Animals | DNA, Bacterial - genetics | Gene Library | Humans | DNA, Neoplasm - genetics | Genome | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | DNA, Plant - genetics
Journal Article
Proceedings: Biological Sciences, ISSN 0962-8452, 12/2015, Volume 282, Issue 1821, pp. 1 - 9
Many populations live in environments subject to frequent biotic and abiotic changes. Nonetheless, it is interesting to ask whether an evolving population's... 
Journal Article
09/2018
Experimental evolution has yielded surprising insights into human history and evolution by shedding light on the roles of chance and contingency in history and... 
Quantitative Biology - Populations and Evolution
Journal Article
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