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1. MacClade
: analysis of phylogeny and character evolution, version 3.0
by Maddison, Wayne P and Maddison, David R
1992, ISBN 9780878934904, xi, 398
Evolution (Biology) | MacClade (Computer program) | Phylogeny
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2. MacClade
: analysis of phylogeny and character evolution, version 3
by Maddison, Wayne P and Maddison, David R
1992, ISBN 9780878934904, 404
Cladistic analysis | Phylogeny | Analyse cladistique | Phylogenèse
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3. Full Text Upper Airway Collapsibility during Dexmedetomidine and Propofol Sedation in Healthy Volunteers: A Nonblinded Randomized Crossover Study
by Lodenius, Åse and Maddison, Kathleen J and Lawther, Brad K and Scheinin, Mika and Eriksson, Lars I and Eastwood, Peter R and Hillman, David R and Fagerlund, Malin Jonsson and Walsh, Jennifer H
Anesthesiology, ISSN 0003-3022, 11/2019, Volume 131, Issue 5, pp. 962 - 973
BACKGROUND:Dexmedetomidine is a sedative promoted as having minimal impact on ventilatory drive or upper airway muscle activity. However, a trial recently... 
ANESTHESIA | EPIDURAL CLONIDINE | INDUCED SLEEP ENDOSCOPY | ANESTHESIOLOGY | HYPOXIC CONTROL | RELIABILITY | SCALE | INDUCTION | INCREASING DEPTH | MORPHOLOGY | BISPECTRAL INDEX
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4. Full Text Comparison of Collapsibility of the Human Upper Airway During Anesthesia and During Sleep
by Maddison, Kathleen J and Walsh, Jennifer H and Shepherd, Kelly L and Bharat, Chrianna and Lawther, Bradley K and Platt, Peter R and Eastwood, Peter R and Hillman, David R
Anesthesia & Analgesia, ISSN 0003-2999, 03/2019, p. 1
BACKGROUND:The propensities for the upper airway to collapse during anesthesia and sleep are related, although much of our understanding of this relationship... 
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5. Full Text Implementation of a geometrically and energetically constrained mesoscale eddy parameterization in an ocean circulation model
by Mak, Julian and Maddison, James R and Marshall, David P and Munday, David R
02/2018
The global stratification and circulation of the ocean and their sensitivities to changes in forcing depend crucially on the representation of the mesoscale... 
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6. Full Text Species delimitation in the ground beetle subgenus Liocosmius (Coleoptera: Carabidae: Bembidion), including standard and next‐generation sequencing of museum specimens
by Maddison, David R and Cooper, Kenneth W
Zoological Journal of the Linnean Society, ISSN 0024-4082, 12/2014, Volume 172, Issue 4, pp. 741 - 770
The species of subgenus Liocosmius Casey of genus Bembidion Latreille are delimited and documented using DNA sequences from eight genes, morphological data,... 
Bembidion | species delimitation | morphology | DNA | museum specimens | systematics | Illumina | Bembidiini | Systematics | Morphology | Museum specimens | Species delimitation | AMERICA | DNA EXTRACTION | INFERENCE | PRESERVATION | GENOMICS | ZOOLOGY | ALIGNMENT | DOMAIN PROTEINS MSP-300 | NORTH | INSECTS | KLARSICHT | Beetles | Museums | Standards
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7. Full Text Phylogeny of Bembidion and related ground beetles (Coleoptera: Carabidae: Trechinae: Bembidiini: Bembidiina)
by Maddison, David R
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 06/2012, Volume 63, Issue 3, pp. 533 - 576
► A well-resolved phylogeny of Bembidiina is inferred from 4 nuclear protein coding and 2 nuclear ribosomal genes, and COI. + form a clade, and with , , , and... 
Minute ground beetles | Bembidion | Systematics | Molecular phylogeny | DNA | Bembidiina | Evolution | SEQUENCE DATA | BIOCHEMISTRY & MOLECULAR BIOLOGY | COELOPTERA | INSECTA | LATREILLE COLEOPTERA | EVOLUTIONARY BIOLOGY | MODELS | GENETICS & HEREDITY | TAXONOMIC REVISION | UTILITY | MOTSCHULSKY | Coleoptera - genetics | Markov Chains | Insect Proteins - genetics | Coleoptera - classification | Gene Dosage | Phylogeny | Multilocus Sequence Typing | Likelihood Functions | Sequence Alignment | Animals | Coleoptera - anatomy & histology | Computer Simulation | Models, Genetic | Monte Carlo Method | Beetles
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8. Full Text Influence of head extension, flexion, and rotation on collapsibility of the passive upper airway
by Walsh, Jennifer H and Maddison, Kathleen J and Platt, Peter R and Hillman, David R and Eastwood, Peter R
Sleep, ISSN 0161-8105, 10/2008, Volume 31, Issue 10, pp. 1440 - 1447
Anesthesia | Sedation | Head extension | Pcrit | Collapsibility | Posture | Upper airway
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9. Full Text The tree of life web project
by Maddison, David R and Schulz, Katja-Sabine and Maddison, Wayne P
Zootaxa, ISSN 1175-5326, 12/2007, Volume 1668, Issue 1668, pp. 19 - 40
The Tree of Life Web Project (ToL) provides information on the Internet about our current knowledge of the evolutionary tree of life and associated information... 
Evolutionary tree | Online collaboration | Genetic history | Linnaeus | Tolweb.org | Digital dissemination | Phylogeny | Tree of life | Biodiversity | biodiversity | SUPERTREE/SUPERMATRIX PARADOX | genetic history | Tree of Life | TAXONOMY | ZOOLOGY | tolweb.org | phylogeny | digital dissemination | online collaboration | HYPERBOLIC SPACE | evolutionary tree
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10. Full Text Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
by Gustafson, Grey T and Alexander, Alana and Sproul, John S and Pflug, James M and Maddison, David R and Short, Andrew E. Z
Ecology and Evolution, ISSN 2045-7758, 06/2019, Volume 9, Issue 12, pp. 6933 - 6948
Targeted capture and enrichment approaches have proven effective for phylogenetic study. Ultraconserved elements (UCEs) in particular have exhibited great... 
genomics | phylogenetics | probe design | ultraconserved elements | phylogenomics | bait design | READ ALIGNMENT | TARGET-ENRICHMENT | BEETLES | COLEOPTERA CARABIDAE | MARKERS | SOFTWARE PACKAGE | EVOLUTIONARY BIOLOGY | PHYLOGENETIC-RELATIONSHIPS | TREE | ECOLOGY | CAPTURE | Design parameters | DNA probes | Baits | Workflow | Birds | Genomes | Phylogeny | Recovery | Reptiles & amphibians | Loci | Optimization | Design optimization | Studies | Design | Beetles | Set design | Phylogenetics | Design factors | Software
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11. The rapidly changing landscape of insect phylogenetics
by Maddison, David R
Current opinion in insect science, 12/2016, Volume 18, p. 77
Insect phylogenetics is being profoundly changed by many innovations. Although rapid developments in genomics have center stage, key progress has been made in... 
Animals | Insecta - classification | Genomics | Databases, Genetic | Entomology - trends | Phylogeny | Research Design - trends
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12. The effect of diaphragm contraction on upper airway collapsibility
by David R Hillman and Jennifer H Walsh and Kathleen J Maddison and Peter R Platt and Alan R Schwartz and Peter R Eastwood
Journal of Applied Physiology, ISSN 8750-7587, 08/2013, Volume 115, Issue 3, p. 337
  Increasing lung volume increases upper airway patency and decreases airway resistance and collapsibility. The role of diaphragm contraction in producing... 
Airway management | Lungs | Correlation analysis | Medical treatment | Sleep apnea
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13. Full Text Hidden species within the genus Ocys Stephens: The widespread species O. harpaloides (Audinet-Serville) and O. tachysoides (Antoine) (Coleoptera, Carabidae, Bembidiini)
by Maddison, David R and Anderson, Roy
Deutsche Entomologische Zeitschrift, ISSN 1435-1951, 2016, Volume 63, Issue 2, pp. 287 - 301
Beetles previously considered to be Ocys harpaloides (Audinet-Serville) from northern Africa, Spain, France, the United Kingdom, France, and Belgium belong to... 
Cryptic species | Ocys | DNA taxonomy | Europe | Bembidiini | Ground beetle | BEETLES | ENTOMOLOGY | cryptic species | ground beetle
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14. Full Text Species delimitation in the ground beetle subgenusLiocosmius(Coleoptera: Carabidae:Bembidion), including standard and next-generation sequencing of museum specimens
: Species ofBembidion (Liocosmius)
by Maddison, David R and Cooper, Kenneth W
Zoological Journal of the Linnean Society, ISSN 0024-4082, 12/2014, Volume 172, Issue 4, pp. 741 - 770
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15. Full Text Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA
by Sproul, John S and Maddison, David R
Molecular Ecology Resources, ISSN 1755-098X, 11/2017, Volume 17, Issue 6, pp. 1183 - 1201
Despite advances that allow DNA sequencing of old museum specimens, sequencing small‐bodied, historical specimens can be challenging and unreliable as many... 
type specimens | high‐throughput DNA sequencing | museum specimens | natural history collections | insects | sample preparation | high-throughput DNA sequencing | PHYLOGENY | BIOCHEMISTRY & MOLECULAR BIOLOGY | ANCIENT DNA | RHODOPHYTA | SHIFTS | FUTURE | BEMBIDION | EVOLUTIONARY BIOLOGY | GENOMICS | MODELS | ECOLOGY | CAPTURE | Coleoptera - genetics | Guidelines as Topic | Gene Library | Specimen Handling - economics | Specimen Handling - methods | Coleoptera - classification | Museums | Entomology - methods | Fossils | DNA - genetics | DNA - isolation & purification | DNA - chemistry | Animals | Sequence Analysis, DNA - economics | Sequence Analysis, DNA - methods | Entomology - economics | Genetic research | Enzymes | Nucleotide sequencing | Analysis | DNA | DNA sequencing | Nucleotide sequence | Adapters | DNA repair | Guidelines | Gene sequencing | Beetles | Sample preparation | Libraries | Dimers | Repair | Deoxyribonucleic acid--DNA
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16. Full Text The beetle tree of life reveals that Coleoptera survived end‐Permian mass extinction to diversify during the Cretaceous terrestrial revolution
by MCKENNA, DUANE D and WILD, ALEXANDER L and KANDA, KOJUN and BELLAMY, CHARLES L and BEUTEL, ROLF G and CATERINO, MICHAEL S and FARNUM, CHARLES W and HAWKS, DAVID C and IVIE, MICHAEL A and JAMESON, MARY LIZ and LESCHEN, RICHARD A. B and MARVALDI, ADRIANA E and MCHUGH, JOSEPH V and NEWTON, ALFRED F and ROBERTSON, JAMES A and THAYER, MARGARET K and WHITING, MICHAEL F and LAWRENCE, JOHN F and ŚLIPIŃSKI, ADAM and MADDISON, DAVID R and FARRELL, BRIAN D
Systematic Entomology, ISSN 0307-6970, 10/2015, Volume 40, Issue 4, pp. 835 - 880
Here we present a phylogeny of beetles (Insecta: Coleoptera) based on DNA sequence data from eight nuclear genes, including six single‐copy nuclear... 
EVOLUTIONARY BIOLOGY | MOLECULAR PHYLOGENETICS | MORPHOLOGICAL CHARACTERS | PHYLOGENETIC ANALYSIS | 18S RIBOSOMAL-RNA | DIVERGENCE TIMES | COMPREHENSIVE PHYLOGENY | COMPOSITIONAL HETEROGENEITY | SCARABAEOIDEA INSECTA | MITOCHONDRIAL GENOMES | ENTOMOLOGY | HOLOMETABOLOUS INSECT | Mass extinction theory | Beetles | Endangered species | Analysis | Endangered & extinct species | Evolution | Diversification | Extinction
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17. Full Text Evaluating nuclear protein-coding genes for phylogenetic utility in beetles
by Wild, Alexander L and Maddison, David R
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 2008, Volume 48, Issue 3, pp. 877 - 891
Although nuclear protein-coding genes have proven broadly useful for phylogenetic inference, relatively few such genes are regularly employed in studies of... 
Beetle evolution | Gene sampling | Phylogenetics | Adephaga | Coleoptera | RNA-POLYMERASE-II | BASAL RELATIONSHIPS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SPECIES TREES | gene sampling | ARGININE KINASE | CARABID BEETLES | SUBSTITUTION PATTERNS | INSECT NUCLEAR | EVOLUTIONARY BIOLOGY | EVOLUTION | beetle evolution | SEQUENCE ALIGNMENT | GENETICS & HEREDITY | phylogenetics | SIMULIIDAE DIPTERA | Coleoptera - genetics | Genes, Insect | Species Specificity | Introns | Insect Proteins - genetics | Phylogeny | DNA Primers - chemistry | Animals | Cell Nucleus - metabolism | Bayes Theorem | Polymerase Chain Reaction | Models, Genetic | Evolution, Molecular | RNA | Genetic research | Electric utilities
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