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Clinical Cancer Research, ISSN 1078-0432, 08/2018, Volume 24, Issue 16, pp. 3813 - 3819
Purpose: Publicly available databases, for example, The Cancer Genome Atlas (TCGA), containing clinical and molecular data from many patients are useful in... 
ONCOLOGY | PROJECT | BIOLOGY
Journal Article
PloS one, ISSN 1932-6203, 2016, Volume 11, Issue 4, pp. e0153461 - e0153461
Journal Article
BIOPHYSICAL JOURNAL, ISSN 0006-3495, 02/2019, Volume 116, Issue 3, pp. 13A - 13A
Conference Proceeding
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 5553 - 5553
Journal Article
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 2604 - 2604
Journal Article
by Costello, James C and Heiser, Laura M and Georgii, Elisabeth and Gönen, Mehmet and Menden, Michael P and Wang, Nicholas J and Bansal, Mukesh and Ammad-Ud-Din, Muhammad and Hintsanen, Petteri and Khan, Suleiman A and Mpindi, John-Patrick and Kallioniemi, Olli and Honkela, Antti and Aittokallio, Tero and Wennerberg, Krister and Collins, James J and Gallahan, Dan and Singer, Dinah and Saez-Rodriguez, Julio and Kaski, Samuel and Gray, Joe W and Stolovitzky, Gustavo and Abbuehl, Jean-Paul and Allen, Jeffrey and Altman, Russ B and Balcome, Shawn and Battle, Alexis and Bender, Andreas and Berger, Bonnie and Bernard, Jonathan and Bhattacharjee, Madhuchhanda and Bhuvaneshwar, Krithika and Bieberich, Andrew A and Boehm, Fred and Califano, Andrea and Chan, Christina and Chen, Beibei and Chen, Ting-Huei and Choi, Jaejoon and Coelho, Luis Pedro and Cokelaer, Thomas and Collins, James C and Creighton, Chad J and Cui, Jike and Dampier, Will and Davisson, V. Jo and De Baets, Bernard and Deshpande, Raamesh and DiCamillo, Barbara and Dundar, Murat and Duren, Zhana and Ertel, Adam and Fan, Haoyang and Fang, Hongbin and Gauba, Robinder and Gottlieb, Assaf and Grau, Michael and Gusev, Yuriy and Ha, Min Jin and Han, Leng and Harris, Michael and Henderson, Nicholas and Hejase, Hussein A and Homicsko, Krisztian and Hou, Jack P and Hwang, Woochang and IJzerman, Adriaan P and Karacali, Bilge and Keles, Sunduz and Kendziorski, Christina and Kim, Junho and Kim, Min and Kim, Youngchul and Knowles, David A and Koller, Daphne and Lee, Junehawk and Lee, Jae K and Lenselink, Eelke B and Li, Biao and Li, Bin and Li, Jun and Liang, Han and Ma, Jian and Madhavan, Subha and Mooney, Sean and Myers, Chad L and Newton, Michael A and Overington, John P and Pal, Ranadip and Peng, Jian and Pestell, Richard and Prill, Robert J and Qiu, Peng and Rajwa, Bartek and Sadanandam, Anguraj and Sambo, Francesco and Shin, Hyunjin and Song, Jiuzhou and Song, Lei and Sridhar, Arvind and ... and NCI DREAM Community
Nature Biotechnology, ISSN 1087-0156, 12/2014, Volume 32, Issue 12, pp. 1202 - 1212
Journal Article
PLoS ONE, ISSN 1932-6203, 07/2016, Volume 11, Issue 7, pp. e0159895 - e0159895
[This corrects the article DOI: 10.1371/journal.pone.0153461.]. 
Biomarkers | Bioindicators | Dystrophy | Metabolism | Duchenne's muscular dystrophy | Muscular dystrophy
Journal Article
PLoS ONE, ISSN 1932-6203, 01/2014, Volume 9, Issue 1
A provisional patent application has been filed by Georgetown University related to the technology described in this paper. Drs. Wellstein and Shivapurkar are... 
Colon cancer | Colon | MicroRNAs | Colorectal cancer | MiRNA | Cancer
Journal Article
Journal Article
Journal of Computational Biology, ISSN 1066-5277, 04/2018, Volume 25, Issue 4, pp. 417 - 429
Statistical approaches for population structure estimation have been predominantly driven by a particular data type, single-nucleotide polymorphisms (SNPs).... 
population structure | copy number variations | single-nucleotide polymorphisms | Bayesian modeling | GENOTYPE | BIOCHEMICAL RESEARCH METHODS | STATISTICS & PROBABILITY | ANCESTRY | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SNPS | STRATIFICATION
Journal Article
Cancer Informatics, ISSN 1176-9351, 12/2017, Volume 16, pp. 1176935117746637 - 1176935117746637
The CINdex Bioconductor package addresses an important area of high-throughput genomic analysis. It calculates the chromosome instability (CIN) index, a novel... 
cancer genomics | copy number variation | genomic instability | DNA copy number | bioconductor | chromosome instability | Genomic analysis | Stability | Authorship | Copy number | Colorectal carcinoma | Values | Genomes | Stability analysis | Gene expression | Patients | Biological activity | Algorithms | Network analysis | Chromosomes | Deoxyribonucleic acid--DNA | Cancer | Tumors
Journal Article
Journal of Experimental & Clinical Cancer Research, ISSN 0392-9078, 05/2015, Volume 34, Issue 1
One-third of estrogen (ER+) and/or progesterone receptor-positive (PGR+) breast tumors treated with Tamoxifen (TAM) do not respond to initial treatment, and... 
Medical research | Chromatin | Genes | Estrogen | Medicine, Experimental | Genetic aspects | Breast cancer | Progesterone | Metastasis | Tamoxifen | Gene expression | Cancer
Journal Article
Molecular Cancer Therapeutics, ISSN 1535-7163, 06/2018, Volume 17, Issue 6, pp. 1259 - 1270
Journal Article
Translational Oncology, ISSN 1936-5233, 2014, Volume 7, Issue 5, pp. 556 - 569
Abstract The National Cancer Institute (NCI) Cancer Imaging Program organized two related workshops on June 26–27, 2013, entitled “Correlating Imaging... 
Oncology | BREAST-CANCER | BIOMARKERS | LUNG-CANCER | GLIOBLASTOMA | ONCOLOGY | DYNAMIC CONTRAST | INTRATUMOR HETEROGENEITY | OVARIAN CANCERS | RENAL-CELL CARCINOMA | MUTATIONAL EVOLUTION | TUMOR HETEROGENEITY
Journal Article
by Chin, L and Meyerson, M and Aldape, K and Bigner, D and Mikkelsen, T and VandenBerg, S and Kahn, A and Penny, R and Gerhard, D. S and Getz, G and Brennan, C and Taylor, B. S and Winckler, W and Park, P and Ladanyi, M and Hoadley, K. A and Verhaak, R. G. W and Hayes, D. N and Spellman, Paul T and Absher, D and Weir, B. A and Ding, L and Wheeler, D and Lawrence, M. S and Cibulskis, K and Mardis, E and Zhang, Jinghui and Wilson, R. K and Donehower, L and Wheeler, D. A and Purdom, E and Wallis, J and Laird, P. W and Herman, J. G and Schuebel, K. E and Weisenberger, D. J and Baylin, S. B and Schultz, N and Yao, Jun and Wiedemeyer, R and Weinstein, J and Sander, C and Gibbs, R. A and Gray, J and Kucherlapati, R and Lander, E. S and Myers, R. M and Perou, C. M and McLendon, Roger and Friedman, Allan and Van Meir, Erwin G and Brat, Daniel J and Mastrogianakis, Gena Marie and Olson, Jeffrey J and Lehman, Norman and Yung, W. K. Alfred and Bogler, Oliver and Berger, Mitchel and Prados, Michael and Muzny, Donna and Morgan, Margaret and Scherer, Steve and Sabo, Aniko and Nazareth, Lynn and Lewis, Lora and Hall, Otis and Zhu, Yiming and Ren, Yanru and Alvi, Omar and Yao, Jiqiang and Hawes, Alicia and Jhangiani, Shalini and Fowler, Gerald and San Lucas, Anthony and Kovar, Christie and Cree, Anew and Dinh, Huyen and Santibanez, Jireh and Joshi, Vandita and Gonzalez-Garay, Manuel L and Miller, Christopher A and Milosavljevic, Aleksandar and Sougnez, Carrie and Fennell, Tim and Mahan, Scott and Wilkinson, Jane and Ziaugra, Liuda and Onofrio, Robert and Bloom, Toby and Nicol, Rob and Ardlie, Kristin and Baldwin, Jennifer and Gabriel, Stacey and Fulton, Robert S and McLellan, Michael D and Larson, David E and Shi, Xiaoqi and Abbott, Rachel and Fulton, Lucinda and Chen, Ken and ... and Tissue Source Sites and Canc Genome Atlas Res Network and Canc Genome Characterization Ctr and Genome Sequencing Ctr and Project Teams and Cancer Genome Atlas Research Network and The Cancer Genome Atlas Research Network
Nature, ISSN 0028-0836, 10/2008, Volume 455, Issue 7216, pp. 1061 - 1068