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Cancer research (Chicago, Ill.), ISSN 0008-5472, 07/2018, Volume 78, Issue 13 Supplement, pp. 2348 - 2348
Journal Article
10/2020
Some embodiments relate to systems for processing one or more computational workflows. In one embodiment, a description of a computational comprises a... 
COMPUTING | COUNTING | PHYSICS | ELECTRIC DIGITAL DATA PROCESSING | CALCULATING
Patent
Key engineering materials, ISSN 1013-9826, 02/2018, Volume 763, pp. 992 - 1001
...Footfall Induced Vibration Response of a Base-Isolated Steel Building Raunaq Malhotra1,a*, Caleb Ndarowa1,b*, Gregory A. MacRae1,c, Alessandro Palermo1,d... 
Damping | Vibration | Dimensionless analysis | Parameter sensitivity | Steel structures | Weight | Nonstructural members | Walking | Office buildings | Field tests | Stiffness | Mathematical models | Seismic design | Frequency ranges | Floors
Journal Article
Computational and structural biotechnology journal, ISSN 2001-0370, 2017, Volume 15, pp. 388 - 395
We propose a random forest classifier for detecting rare variants from sequencing errors in Next Generation Sequencing (NGS) data from viral populations. The... 
Reference free methods | Viral populations | Sequencing error detection | Next-generation sequencing | Random forest classifier | Multi-resolution frames | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology
Journal Article
Journal Article
05/2019
Some embodiments relate to systems for processing one or more computational workflows. In one embodiment, a description of a computational comprises a... 
COMPUTING | COUNTING | PHYSICS | ELECTRIC DIGITAL DATA PROCESSING | CALCULATING
Patent
Proceedings of the 6th ACM Conference on bioinformatics, computational biology and health informatics, 09/2015, pp. 665 - 672
Metagenomics involves the analysis of genomes of microorganisms sampled directly from their environment. Next Generation Sequencing (NGS) technologies allow a... 
Bayesian models | metagemonics | NGS reads | lattice structure | clustering | EM algorithm | dimension reduction | Dimension reduction | Clustering | Lattice structure | Metagemonics
Conference Proceeding
04/2016
We propose a frame-based representation of k-mers for detecting sequencing errors and rare variants in next generation sequencing data obtained from... 
Quantitative Biology - Genomics
Journal Article
Proceedings of the 8th International Conference on Bioinformatics and Computational Biology, BICOB 2016, 2016, pp. 63 - 68
Conference Proceeding
Computation, ISSN 2079-3197, 2014, Volume 2, Issue 4, pp. 221 - 245
...Computation 2014, 2, 221-245; doi:10.3390/computation2040221 Article Le Bao 1,, Daniel Elleder 2,, Raunaq Malhotra 3,, Michael DeGiorgio 4, Theodora Maravegias... 
De novo clustering | Insertional polymorphism | Endogenous retrovirus | Mule deer | Mixture models | Population history | Uncertainty | Population (statistical) | Statistical analysis | Computation | Endogenous retroviruses | Genomes | Organisms | Clustering | population history | mule deer | insertional polymorphism | mixture models | de novo clustering | endogenous retrovirus
Journal Article
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2013, Volume 7986, pp. 265 - 276
Conference Proceeding
02/2015
We present MLEHaplo, a maximum likelihood de novo assembly algorithm for reconstructing viral haplotypes in a virus population from paired-end next generation... 
Quantitative Biology - Populations and Evolution
Journal Article
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