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Nature Biotechnology, ISSN 1087-0156, 04/2018, Volume 36, Issue 4, pp. 369 - 371
Engaging undergraduates in computational tasks can improve genomic research laboratory productivity, benefiting both students and senior laboratory members. 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PARTICIPATION | Education, Medical, Undergraduate | Education - trends | Students | Humans | Genomics - education | Genetic research | Universities and colleges | Research | Management | Educational aspects | Index Medicus
Journal Article
Genome Biology, ISSN 1474-7596, 02/2019, Volume 20, Issue 1, pp. 47 - 47
Implementation of bioinformatics software involves numerous unique challenges; a rigorous standardized approach is needed to examine software tools prior to... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Archives | Computational Biology - standards | Software - standards | Studies | Automation | Biomedical research | Researchers | Software packages | Funding | Genomics | Biology | Software | Usability | Bioinformatics | Computer programs | Index Medicus
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 08/2018
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 07/2011, Volume 12, Issue 6, pp. S1 - S1
Background: RNA viruses infecting a host usually exist as a set of closely related sequences, referred to as quasispecies. The genomic diversity of viral... 
AIDS | DESIGN | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Microbial Sensitivity Tests | Sequence Analysis, RNA - methods | Genome, Viral | Algorithms | Humans | Hepacivirus - genetics | RNA, Viral - analysis | HIV - genetics | Software | Phylogeny | Index Medicus
Journal Article
03/2019, SpringerBriefs in computer science, ISBN 9783030139728, 99
Advances in RNA-sequencing (RNA-seq) technologies have provided an unprecedented opportunity to explore the gene expression landscape across individuals,... 
Nucleotide sequence | RNA-Analysis
eBook
NATURE BIOTECHNOLOGY, ISSN 1087-0156, 03/2019, Volume 37, Issue 3, pp. 324 - 326
Providing training and access to standard computing hardware and cloud-based resources can enable scientists in lower-resource institutions and countries to... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Science | Study and teaching | Methods | Computational biology | Careers | Bioinformatics | Colleges & universities | Index Medicus
Journal Article
Algorithms for Molecular Biology, ISSN 1748-7188, 04/2011, Volume 6, Issue 1, pp. 9 - 9
Background: Massively parallel whole transcriptome sequencing, commonly referred as RNA-Seq, is quickly becoming the technology of choice for gene expression... 
TRANSCRIPTOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | QUANTIFICATION | RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SHORT SEQUENCE READS | EXPRESSION LEVELS | GENE-EXPRESSION | GENOME | REVEALS
Journal Article
BMC GENOMICS, ISSN 1471-2164, 06/2019, Volume 20, Issue Suppl 5, pp. 423 - 10
Journal Article
by Barbeira, Alvaro N and Dickinson, Scott P and Bonazzola, Rodrigo and Zheng, Jiamao and Wheeler, Heather E and Torres, Jason M and Torstenson, Eric S and Shah, Kaanan P and Garcia, Tzintzuni and Edwards, Todd L and Stahl, Eli A and Huckins, Laura M and Aguet, François and Ardlie, Kristin G and Cummings, Beryl B and Gelfand, Ellen T and Getz, Gad and Hadley, Kane and Handsaker, Robert E and Huang, Katherine H and Kashin, Seva and Karczewski, Konrad J and Lek, Monkol and Li, Xiao and MacArthur, Daniel G and Nedzel, Jared L and Nguyen, Duyen T and Noble, Michael S and Segrè, Ayellet V and Trowbridge, Casandra A and Tukiainen, Taru and Abell, Nathan S and Balliu, Brunilda and Barshir, Ruth and Basha, Omer and Battle, Alexis and Bogu, Gireesh K and Brown, Andrew and Brown, Christopher D and Castel, Stephane E and Chen, Lin S and Chiang, Colby and Conrad, Donald F and Damani, Farhan N and Davis, Joe R and Delaneau, Olivier and Dermitzakis, Emmanouil T and Engelhardt, Barbara E and Eskin, Eleazar and Ferreira, Pedro G and Frésard, Laure and Gamazon, Eric R and Garrido-Martín, Diego and Gewirtz, Ariel D. H and Gliner, Genna and Gloudemans, Michael J and Guigo, Roderic and Hall, Ira M and Han, Buhm and He, Yuan and Hormozdiari, Farhad and Howald, Cedric and Jo, Brian and Kang, Eun Yong and Kim, Yungil and Kim-Hellmuth, Sarah and Lappalainen, Tuuli and Li, Gen and Li, Xin and Liu, Boxiang and Mangul, Serghei and McCarthy, Mark I and McDowell, Ian C and Mohammadi, Pejman and Monlong, Jean and Montgomery, Stephen B and Muñoz-Aguirre, Manuel and Ndungu, Anne W and Nobel, Andrew B and Oliva, Meritxell and Ongen, Halit and Palowitch, John J and Panousis, Nikolaos and Papasaikas, Panagiotis and Park, YoSon and Parsana, Princy and Payne, Anthony J and Peterson, Christine B and Quan, Jie and Reverter, Ferran and Sabatti, Chiara and Saha, Ashis and Sammeth, Michael and Scott, Alexandra J and Shabalin, Andrey A and Sodaei, Reza and Stephens, Matthew and Stranger, Barbara E and Strober, Benjamin J and Sul, Jae Hoon and ... and GTEx Consortium
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 1825 - 20
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2012, Volume 13, Issue S18, pp. A11 - A11
  Doc number: A11 
Studies | Genomes | Student organizations | Methods
Journal Article
Molecular biology and evolution, ISSN 0737-4038, 11/2018, Volume 35, Issue 11, pp. 2736 - 2750
As are most non-European populations, the Han Chinese are relatively understudied in population and medical genetics studies. From low-coverage whole-genome... 
MODERN HUMANS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ADMIXTURE | EVOLUTIONARY BIOLOGY | GENOME SEQUENCE | POSITIVE SELECTION | C677T POLYMORPHISM | NATURAL-SELECTION | GENETICS & HEREDITY | CLASS-I | POPULATION-STRUCTURE | NEANDERTHAL ANCESTRY | PLASMA HOMOCYSTEINE | Index Medicus
Journal Article
The Journal of biological chemistry, ISSN 0021-9258, 09/2019, Volume 294, Issue 37, pp. 13530 - 13544
Our recent single-cell transcriptomic analysis has demonstrated that heterogeneous transcriptional activity attends molecular transition from the nascent to... 
Molecular Bases of Disease | vision | cataract | transcription | spatial transcriptomics | single cells | lens | crystallin | crystallin gene expression | genetic cataract | gene expression
Journal Article
PLOS BIOLOGY, ISSN 1544-9173, 06/2019, Volume 17, Issue 6, pp. e3000333 - e3000333
Developing new software tools for analysis of large-scale biological data is a key component of advancing modern biomedical research. Scientific reproduction... 
BIOINFORMATICS | SOFTWARE-DEVELOPMENT | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | LIFE | Genomics | Documentation | Biochemistry | Genomes | Stability analysis | Research | Software development tools | Empirical analysis | Computer programs | Computer science | Researchers | Computation | Bibliometrics | Journals | Computer applications | Locators | Software | Internet | Molecular biology | Digital preservation | Bioinformatics
Journal Article
by Battle, Alexis and Brown, Christopher D and Engelhardt, Barbara E and Montgomery, Stephen B and Aguet, François and Ardlie, Kristin G and Cummings, Beryl B and Gelfand, Ellen T and Getz, Gad and Hadley, Kane and Handsaker, Robert E and Huang, Katherine H and Kashin, Seva and Karczewski, Konrad J and Lek, Monkol and Li, Xiao and MacArthur, Daniel G and Nedzel, Jared L and Nguyen, Duyen T and Noble, Michael S and Segrè, Ayellet V and Trowbridge, Casana A and Tukiainen, Taru and Abell, Nathan S and Balliu, Brunilda and Barshir, Ruth and Basha, Omer and Bogu, Gireesh K and Brown, Anew and Castel, Stephane E and Chen, Lin S and Chiang, Colby and Conrad, Donald F and Cox, Nancy J and Damani, Farhan N and Davis, Joe R and Delaneau, Olivier and Dermitzakis, Emmanouil T and Eskin, Eleazar and Ferreira, Peo G and Frésard, Laure and Gamazon, Eric R and Garrido-Martín, Diego and Gewirtz, Ariel D. H and Gliner, Genna and Gloudemans, Michael J and Guigo, Roderic and Hall, Ira M and Han, Buhm and He, Yuan and Hormozdiari, Farhad and Howald, Ceic and Kyung Im, Hae and Jo, Brian and Yong Kang, Eun and Kim, Yungil and Kim-Hellmuth, Sarah and Lappalainen, Tuuli and Li, Gen and Li, Xin and Liu, Boxiang and Mangul, Serghei and McCarthy, Mark I and McDowell, Ian C and Mohammadi, Pejman and Monlong, Jean and Muñoz-Aguirre, Manuel and Ndungu, Anne W and Nicolae, Dan L and Nobel, Anew B and Oliva, Meritxell and Ongen, Halit and Palowitch, John J and Panousis, Nikolaos and Papasaikas, Panagiotis and Park, Yoson and Parsana, Princy and Payne, Anthony J and Peterson, Christine B and Quan, Jie and Reverter, Ferran and Sabatti, Chiara and Saha, Ashis and Sammeth, Michael and Scott, Alexana J and Shabalin, Aney A and Sodaei, Reza and Stephens, Matthew and Stranger, Barbara E and Strober, Benjamin J and Sul, Jae Hoon and Tsang, Emily K and Urbut, Sarah and van de Bunt, Martijn and Wang, Gao and Wen, Xiaoquan and Wright, Fred A and Xi, Hualin S and Yeger-Lotem, Esti and Zappala, Zachary and ... and Pathology and Laboratory Data Analysis and Lab Data Anal Coordinating Ct and Stat Methods Grps-Anal Working Grp and Biospecimen Collection Source Sit and Genome Browser Data Integration and Biospecimen Core Resource-Vari and Leidos Biomedical-Project and Genome Browser Data Integr and Enhancing Gtex Egtex Grps and Gtex Consortium and Biospecimen Collection Source and Brain Bank Repository-Univ M and GTEx Consortium and Leidos Biomedical—Project Management and Laboratory, Data Analysis &Coordinating Center (LDACC) and NIH/NCI and Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group and Statistical Methods groups—Analysis Working Group and Biospecimen Collection Source Site—NDRI and NIH/NHGRI and Brain Bank Repository—University of Miami Brain Endowment Bank and Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz and NIH Common Fund and Enhancing GTEx (eGTEx) groups and NIH/NIMH and Genome Browser Data Integration &Visualization—EBI and Lead analysts and Biospecimen Collection Source Site—RPCI and Biospecimen collection and Biospecimen Core Resource—VARI and NIH program management and eQTL manuscript working group and ELSI Study and NIH/NIDA
Nature, ISSN 0028-0836, 2017, Volume 550, Issue 7675, pp. 204 - 213
Journal Article