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1. Full Text Interpreting and integrating big data in the life sciences
by Mangul, Serghei
Emerging topics in life sciences, ISSN 2397-8554, 08/2019, Volume 3, Issue 4, pp. 335 - 341
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2. Full Text Metalign: Efficient alignment-based metagenomic profiling via containment min hash
by Lapierre, Nathan and Alser, Mohammed and Eskin, Eleazar and Koslicki, David and Mangul, Serghei
Genome Biology, ISSN 1474-7596, 09/2020, Volume 21, Issue 1, pp. 1 - 242
Metagenomics | Alignment | Abundance estimation | Profiling | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Datasets | Competition | Microorganisms | Databases | Taxonomy | Microbiomes | Genomes | Organisms | Methods | Index Medicus
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3. Full Text Improving the usability and archival stability of bioinformatics software
by Mangul, Serghei and Martin, Lana S and Eskin, Eleazar and Blekhman, Ran
Genome Biology, ISSN 1474-7596, 02/2019, Volume 20, Issue 1, pp. 47 - 47
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Studies | Automation | Biomedical research | Researchers | Software packages | Funding | Genomics | Biology | Software | Usability | Bioinformatics | Computer programs | Index Medicus
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4. Full Text Involving undergraduates in genomics research to narrow the education-research gap
by Mangul, Serghei and Martin, Lana S and Eskin, Eleazar
Nature biotechnology, ISSN 1087-0156, 04/2018, Volume 36, Issue 4, pp. 369 - 371
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genetic research | Universities and colleges | Research | Management | Educational aspects | Index Medicus
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5. Full Text Systematic benchmarking of omics computational tools
by Mangul, Serghei and Martin, Lana S and Hill, Brian L and Lam, Angela Ka-Mei and Distler, Margaret G and Zelikovsky, Alex and Eskin, Eleazar and Flint, Jonathan
Nature communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 1393 - 1393
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Metabolomics | Benchmarking | Software | Genomics | Humans | Computational Biology | Domains | Computation | Technological change | Computer applications | Biomedical data | Dependence | Innovations | Benchmarks | Biology | Software development tools | Computer programs | Index Medicus
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6. Full Text Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX
by Mangul, Serghei and Martin, Lana S and Hoffmann, Alexander and Pellegrini, Matteo and Eskin, Eleazar
Trends in biotechnology (Regular ed.), ISSN 0167-7799, 10/2017, Volume 35, Issue 10, pp. 901 - 903
computational biology | command line interface | training | education | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Programming Languages | User-Computer Interface | Computer Literacy | Genomics - methods | Genomics - education | Automatic Data Processing | Computer science | Unix | Scientists | Usage | Developmental biology | Medical research | Data analysis | Genomics | Big Data | Data processing | Workshops | Biology | Digital divide | UNIX (operating system) | Medical science | Software reviews | Researchers | Students | User interface | Collaboration | Bioinformatics | Index Medicus
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7. Full Text Correction to: Improving the usability and comprehensiveness of microbial databases
by Loeffler, Caitlin and Karlsberg, Aaron and Martin, Lana S and Eskin, Eleazar and Koslicki, David and Mangul, Serghei
BMC biology, ISSN 1741-7007, 07/2020, Volume 18, Issue 1, pp. 1 - 92
Databases | Usability | Microorganisms | Biology | Index Medicus
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8. Full Text How bioinformatics and open data can boost basic science in countries and universities with limited resources
by Mangul, Serghei and Martin, Lana S and Langmead, Ben and Sanchez-Galan, Javier E and Toma, Ian and Hormozdiari, Fereydoun and Pevzner, Pavel and Eskin, Eleazar
Nature biotechnology, ISSN 1087-0156, 03/2019, Volume 37, Issue 3, pp. 324 - 326
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Science | Study and teaching | Methods | Computational biology | Careers | Bioinformatics | Open data | Index Medicus
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9. Full Text Improving the usability and comprehensiveness of microbial databases
by Loeffler, Caitlin and Karlsberg, Aaron and Martin, Lana S and Eskin, Eleazar and Koslicki, David and Mangul, Serghei
BMC biology, ISSN 1741-7007, 04/2020, Volume 18, Issue 1, pp. 37 - 37
Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Genomes | Databases | Research | Analysis | Genomics | Studies | Microorganisms | Researchers | Taxonomy | Labelling | Identification | Usability | Chromosomes | Data bases | Index Medicus
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10. Full Text Inferring viral quasispecies spectra from 454 pyrosequencing reads
by Astrovskaya, Irina and Tork, Bassam and Mangul, Serghei and Westbrooks, Kelly and Mǎndoiu, Ion and Balfe, Peter and Zelikovsky, Alex
BMC bioinformatics, ISSN 1471-2105, 07/2011, Volume 12, Issue 6, pp. S1 - S1
Microbial Sensitivity Tests | Sequence Analysis, RNA - methods | Genome, Viral | Algorithms | Humans | Hepacivirus - genetics | RNA, Viral - analysis | HIV - genetics | Software | Phylogeny | Index Medicus
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11. Full Text Hidden Treasures in Contemporary RNA Sequencing
by Mangul, Serghei and Yang, Harry Taegyun and Eskin, Eleazar and Zaitlen, Noah
2019, SpringerBriefs in computer science, ISBN 9783030139728, 99
RNA-Analysis
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12. Full Text MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples
by LaPierre, Nathan and Mangul, Serghei and Alser, Mohammed and Mandric, Igor and Wu, Nicholas C and Koslicki, David and Eskin, Eleazar
BMC genomics, ISSN 1471-2164, 06/2019, Volume 20, Issue Suppl 5, pp. 423 - 423
Usage | Eukaryotes | Genetic aspects | Nucleotide sequencing | DNA sequencing | Microbial activity | Profiling | Computer simulation | Laboratories | Communities | Genes | Archaea | Microbiomes | Viruses | Mapping | Genomes | Fungi | Microorganisms | Databases | Next-generation sequencing | Soil water | Gene mapping | Methods | Index Medicus | Metagenomics | Eukaryome | Alignment | Abundance estimation | Virome | Community profiling
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13. Full Text Estimation of alternative splicing isoform frequencies from RNA-Seq data
by Nicolae, Marius and Nicolae, Marius and Mangul, Serghei and Mangul, Serghei and Mǎndoiu, Ion I and Mandoiu, Ion I and Zelikovsky, Alex and Zelikovsky, Alex
Algorithms for molecular biology, ISSN 1748-7188, 04/2011, Volume 6, Issue 1, pp. 9 - 9
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology
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14. Full Text PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom
by Mitchell, Keith and Ronas, Jiem and Dao, Christopher and Freise, Amanda C and Mangul, Serghei and Shapiro, Casey and Moberg Parker, Jordan
Frontiers in microbiology, ISSN 1664-302X, 10/2020, Volume 11, pp. 584699 - 584699
Life Sciences & Biomedicine | Microbiology | Science & Technology | College students | 16S rRNA | software tool | undergraduate education | GUI (Graphical User Interface) | curriculum | microbiome
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15. Full Text A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese
by Chiang, Charleston W K and Mangul, Serghei and Robles, Christopher and Sankararaman, Sriram
Molecular biology and evolution, ISSN 0737-4038, 11/2018, Volume 35, Issue 11, pp. 2736 - 2750
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Gene Frequency | Humans | Phylogeography | Asian Continental Ancestry Group - genetics | Selection, Genetic | Adaptation, Biological | Neanderthals - genetics | Case-Control Studies | Biological Evolution | Genetic Variation | Animals | Depressive Disorder, Major - genetics | China | Female | Index Medicus | Discoveries
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16. Full Text CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma
by Schokrpur, Shiruyeh and Hu, Junhui and Moughon, Diana L and Liu, Peijun and Lin, Lucia C and Hermann, Kip and Mangul, Serghei and Guan, Wei and Pellegrini, Matteo and Xu, Hua and Wu, Lily
Scientific reports, ISSN 2045-2322, 06/2016, Volume 6, Issue 1, pp. 29032 - 29032
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Humans | Neoplasm Proteins - physiology | Gene Expression Regulation, Neoplastic | Carcinoma, Renal Cell - genetics | Heterografts | Lung Neoplasms - secondary | Epithelial-Mesenchymal Transition | Female | RNA, Guide | Von Hippel-Lindau Tumor Suppressor Protein - genetics | Hypoxia-Inducible Factor 1, alpha Subunit - physiology | Neoplasm Proteins - genetics | Disease Models, Animal | Datasets as Topic | Hypoxia-Inducible Factor 1, alpha Subunit - genetics | Von Hippel-Lindau Tumor Suppressor Protein - physiology | Gene Editing | Bacterial Proteins | Mice, Knockout | Animals | Mice, Nude | Carcinoma, Renal Cell - secondary | CRISPR-Cas Systems | Endonucleases | Cell Line, Tumor | Kidney Neoplasms - pathology | Mice | Cell Movement | Index Medicus
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