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1. Full Text Evolution and phylogeny of large DNA viruses, Mimiviridae and Phycodnaviridae including newly characterized Heterosigma akashiwo virus
by Maruyama, Fumito and Ueki, Shoko
Frontiers in Microbiology, ISSN 1664-302X, 11/2016, Volume 7
Nucleocytoplasmic DNA viruses are a large group of viruses that harbor double-stranded DNA genomes with sizes of several hundred kbp, challenging the... 
Evolution | Phylogeny | Heterosigma akashiwo virus | Mimiviridae | Phycodnaviridae | Nucleocytoplasmic large DNA virus | Genetic aspects | Research | DNA viruses | phylogeny | evolution | Nucleocytoplasmic large DNA viruses
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2. Full Text Complete Genome Sequence of Acidovorax sp. Strain KKS102, a Polychlorinated-Biphenyl Degrader
by Yoshiyuki Ohtsubo and Fumito Maruyama and Hisayuki Mitsui and Yuji Nagata and Masataka Tsuda
Journal of Bacteriology, ISSN 0021-9193, 12/2012, Volume 194, Issue 24, pp. 6970 - 6971
Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
CRYSTALLIZATION | 2FE-2S FERREDOXIN | BENZOIC-ACID | PSEUDOMONAS SP KKS102 | GENES | MIXED CULTURE | MICROBIOLOGY | IDENTIFICATION | 2,3-DIHYDROXYBIPHENYL | X-RAY ANALYSIS | BIPHENYL/BIPHENYL DEGRADATION | Biodegradation, Environmental | Comamonadaceae - isolation & purification | Genome, Bacterial | DNA, Bacterial - genetics | Comamonadaceae - genetics | Soil Microbiology | Base Sequence | Molecular Sequence Data | RNA, Bacterial - genetics | Polychlorinated Biphenyls - metabolism | Sequence Analysis, DNA | Comamonadaceae - metabolism | Biodegradation | Physiological aspects | Proteobacteria | Genetic aspects | Research | Genome Announcements
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3. Full Text Evolution and Phylogeny of Large DNA Viruses, Mimiviridae and Phycodnaviridae Including Newly Characterized Heterosigma akashiwo Viru s
by Maruyama, Fumito and Ueki, Shoko
Frontiers in microbiology, ISSN 1664-302X, 2016, Volume 7, p. 1942
Nucleocytoplasmic DNA viruses are a large group of viruses that harbor double-stranded DNA genomes with sizes of several 100 kbp, challenging the traditional... 
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4. Full Text Intraindividual variation in core microbiota in peri-implantitis and periodontitis
by Maruyama, Noriko and Maruyama, Fumito and Takeuchi, Yasuo and Aikawa, Chihiro and Izumi, Yuichi and Nakagawa, Ichiro
Scientific Reports, ISSN 2045-2322, 10/2014, Volume 4, Issue 1, pp. 6602 - 6602
The oral microbiota change dramatically with each part of the oral cavity, even within the same mouth. Nevertheless, the microbiota associated with... 
PROFILES | DENTAL IMPLANTS | THERAPY | MULTIDISCIPLINARY SCIENCES | ORAL MICROBIOTA | DISEASE | DIVERSITY | SUBGINGIVAL MICROBIOTA | COMMUNITIES | HEALTHY | SURGICAL-TREATMENT | Periodontitis - microbiology | Humans | Middle Aged | Peptostreptococcus - pathogenicity | Periodontitis - pathology | Male | Peri-Implantitis - microbiology | Peri-Implantitis - pathology | Peptostreptococcus - isolation & purification | Peri-Implantitis - genetics | Periodontitis - genetics | Mouth - microbiology | Microbiota - genetics | Mouth - pathology | Female | Peptostreptococcus - genetics | Oral cavity | Microorganisms | Periodontitis | Correlation analysis | Index Medicus
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5. Full Text Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation
by Hori, Koichi and Maruyama, Fumito and Fujisawa, Takatomo and Togashi, Tomoaki and Yamamoto, Nozomi and Seo, Mitsunori and Sato, Syusei and Yamada, Takuji and Mori, Hiroshi and Tajima, Naoyuki and Moriyama, Takashi and Ikeuchi, Masahiko and Watanabe, Mai and Wada, Hajime and Kobayashi, Koichi and Saito, Masakazu and Masuda, Tatsuru and Sasaki-Sekimoto, Yuko and Mashiguchi, Kiyoshi and Awai, Koichiro and Shimojima, Mie and Masuda, Shinji and Iwai, Masako and Nobusawa, Takashi and Narise, Takafumi and Kondo, Satoshi and Saito, Hikaru and Sato, Ryoichi and Murakawa, Masato and Ihara, Yuta and Oshima-Yamada, Yui and Ohtaka, Kinuka and Satoh, Masanori and Sonobe, Kohei and Ishii, Midori and Ohtani, Ryosuke and Kanamori-Sato, Miyu and Honoki, Rina and Miyazaki, Daichi and Mochizuki, Hitoshi and Umetsu, Jumpei and Higashi, Kouichi and Shibata, Daisuke and Kamiya, Yuji and Sato, Naoki and Nakamura, Yasukazu and Tabata, Satoshi and Ida, Shigeru and Kurokawa, Ken and Ohta, Hiroyuki
Nature Communications, ISSN 2041-1723, 05/2014, Volume 5, Issue 1, p. 3978
The colonization of land by plants was a key event in the evolution of life. Here we report the draft genome sequence of the filamentous terrestrial alga... 
PHOTOPROTECTION | EVOLUTION | PROTEIN | GREEN-ALGA | SALICYLIC-ACID | MULTIDISCIPLINARY SCIENCES | LIGHT | LAND | MULTIPLE SEQUENCE ALIGNMENT | CYCLIC ELECTRON FLOW | INSIGHTS | Protein Structure, Tertiary | Electron Transport | Multigene Family | Signal Transduction | Genes, Plant | Fluorescence | Molecular Sequence Data | Chlorophyll - metabolism | Genome, Plant | Phylogeny | Streptophyta - genetics | Microscopy, Interference | Sequence Analysis, DNA | Adaptation, Physiological - genetics | Mass Spectrometry | Plant Growth Regulators - metabolism
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6. Full Text Application of serial tests for Mycobacterium tuberculosis detection to active lung tuberculosis cases in Indonesia
by Sari, Nastiti Intan Permata and Mertaniasih, Ni Made and Soedarsono and Maruyama, Fumito
BMC research notes, ISSN 1756-0500, 06/2019, Volume 12, Issue 1, pp. 313 - 5
Rapid detection and accurate diagnosis are very important in managing active tuberculosis because they provide an advantage in preventing further disease... 
Prevention | Medical research | Disease transmission | Mycobacterium tuberculosis | Patient outcomes | Medicine, Experimental | Genetic research | Risk factors | Bacilli | Accuracy | Tuberculosis | Microscopy | Laboratories | Infections | Patients | Deoxyribonucleic acid--DNA | Methods | Gene Xpert | PCR method | Serial tests | Acid fast bacilli | Culture method | Pulmonary tuberculosis
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7. Full Text Transmission of airborne bacteria across built environments and its measurement standards: A review
by Fujiyoshi, So and Tanaka, Daisuke and Maruyama, Fumito
Frontiers in Microbiology, ISSN 1664-302X, 11/2017, Volume 8, p. 2336
Human health is influenced by various factors including microorganisms present in built environments where people spend most of their lives (approximately... 
Outdoor environments | Holobiome | Bacterial concentration | Airborne bacteria | Built environments | Bacterial communities | Multiscale interaction | UNITED-STATES | SUBWAY SYSTEM | multiscale interaction | holobiome | built environments | MICROBIOLOGY | bacterial communities | OUTDOOR AIR | outdoor environments | AEROBIOLOGY CHAMBER | bacterial concentration | airborne bacteria | MICROBIAL COMMUNITIES | SEASONAL VARIABILITY | LAND-USE | DIVERSITY | INDOOR-AIR | RELATIVE-HUMIDITY | Airborne infection | Public health administration | Health aspects | Risk factors | Methods | Indoor air quality
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8. Full Text The small GTPases Rab9A and Rab23 function at distinct steps in autophagy during Group A Streptococcus infection
by Nozawa, Takashi and Aikawa, Chihiro and Goda, Akira and Maruyama, Fumito and Hamada, Shigeyuki and Nakagawa, Ichiro
Cellular Microbiology, ISSN 1462-5814, 08/2012, Volume 14, Issue 8, pp. 1149 - 1165
Summary Autophagy mediates the degradation of cytoplasmic contents in the lysosome and plays a significant role in immunity. Here we identified the small... 
CELLS | RECRUITMENT | ENDOSOMES | MULTIVESICULAR BODIES | TRANS-GOLGI | SALMONELLA | MICROBIOLOGY | MACROAUTOPHAGY | INDUCTION | MATURATION | NEGATIVE REGULATOR | CELL BIOLOGY | Phagosomes - microbiology | rab GTP-Binding Proteins - metabolism | Streptococcal Infections - microbiology | Vacuoles - enzymology | Phagosomes - enzymology | Membrane Fusion | Humans | Lysosomes - enzymology | Streptococcus pyogenes - physiology | rab GTP-Binding Proteins - genetics | Microbial Viability | Autophagy | Gene Knockdown Techniques | Protein Transport | Host-Pathogen Interactions | Microscopy, Confocal | rab GTP-Binding Proteins - physiology | Lysosomes - microbiology | RNA Interference | HeLa Cells | Proteins | Viral antibodies | Analysis | DNA | Antibodies | Universities and colleges | G proteins | Health aspects
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9. Full Text Genetic Analysis of Capsular Polysaccharide Synthesis Gene Clusters from All Serotypes of Streptococcus suis: Potential Mechanisms for Generation of Capsular Variation
by Masatoshi Okura and Daisuke Takamatsu and Fumito Maruyama and Takashi Nozawa and Ichiro Nakagawa and Makoto Osaki and Tsutomu Sekizaki and Marcelo Gottschalk and Yumi Kumagai and Shigeyuki Hamada
Applied and Environmental Microbiology, ISSN 0099-2240, 04/2013, Volume 79, Issue 8, pp. 2796 - 2806
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
PIGS | ZOONOTIC PATHOGEN | BACTERIA | COMPLETE GENOME SEQUENCE | EVOLUTIONARY GENETICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MICROBIOLOGY | DIVERSITY | PCR ASSAYS | VIRULENCE | IDENTIFICATION | CPS LOCUS | Genes, Bacterial | Multigene Family | Bacterial Capsules - metabolism | Molecular Sequence Data | Polysaccharides, Bacterial - immunology | Polysaccharides, Bacterial - biosynthesis | Sequence Analysis, DNA | Sequence Alignment | Streptococcus suis - genetics | Base Sequence | Bacterial Capsules - genetics | Streptococcus suis - classification | Bacterial Capsules - immunology | Serotyping | Influence | Polysaccharides | Genetic aspects | Streptococcus | Research | Mutation (Biology) | Antigenicity | Evolutionary and Genomic Microbiology
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10. Full Text Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species
by Watanabe, Takayasu and Shibasaki, Masaki and Maruyama, Fumito and Sekizaki, Tsutomu and Nakagawa, Ichiro
PLoS ONE, ISSN 1932-6203, 08/2017, Volume 12, Issue 8, p. e0183752
The oral bacterial species Porphyromonas gingivalis, a periodontal pathogen, has plastic genomes that may be driven by homologous recombination with exogenous... 
HORIZONTAL TRANSFER | SMALL RNA | BACTERIA | MULTIDISCIPLINARY SCIENCES | SEQUENCE | GINGIVALIS | CAS SYSTEMS | HOMOLOGOUS RECOMBINATION | GENE-TRANSFER | SP NOV | CD-HIT | Genome, Bacterial | Mouth - microbiology | Species Specificity | Porphyromonas - classification | Porphyromonas - genetics | Clustered Regularly Interspaced Short Palindromic Repeats | Databases, Genetic | Gums | Genomes | Research | Transformation | Adaptive systems | Laboratories | Genomics | Genes | Phages | Homologous recombination | Homology | Immunity | Taxa | Bacteria | Restriction-modification | Life sciences | Species | Deoxyribonucleic acid--DNA | Immune system | Bacteriophages | Pathogens | CRISPR | Periodontics | Adaptive immunity | Nucleic acids | Spacers | Biofilms | Plasmids | Species classification | Food safety | Conjugation | Genetic testing | Deoxyribonucleic acid | DNA
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11. Full Text Updating the Vibrio clades defined by multilocus sequence phylogeny: Proposal of eight new clades, and the description of Vibrio tritonius sp. nov
by Sawabe, Tomoo and Ogura, Yoshitoshi and Matsumura, Yuta and Feng, Gao and Rohul Amin, A.K.M and Mino, Sayaka and Nakagawa, Satoshi and Sawabe, Toko and Kumar, Ramesh and Fukui, Yohei and Satomi, Masataka and Matsushima, Ryoji and Thompson, Fabiano L and Gomez-Gil, Bruno and Christen, Richard and Maruyama, Fumito and Kurokawa, Ken and Hayashi, Tetsuya
Frontiers in Microbiology, ISSN 1664-302X, 2013, Volume 4, p. 414
To date 142 species have been described in the Vibrionaceae family of bacteria, classified into seven genera; Aliivibrio, Echinimonas, Enterovibrio, Grimontia,... 
Evolution | Vibrionaceae | Housekeeping protein gene | Vibrio tritonius | Vibrios | Multilocus sequence analysis | DEOXYRIBONUCLEIC-ACID | EVOLUTIONARY | SPECIES DEFINITION | MICROBIOLOGY | MARINE BACTERIUM | evolution | vibrios | IDENTIFICATION | multilocus sequence analysis | MICROORGANISMS | DNA-DNA HYBRIDIZATION | GENOME SEQUENCE | AD-HOC-COMMITTEE | housekeeping protein gene | MICRODILUTION WELLS | Life Sciences | Microbiology and Parasitology | Multilocus Sequence Typing
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12. Full Text YvqE and CovRS of Group a streptococcus play a pivotal role in viability and phenotypic adaptations to multiple environmental stresses
by Roobthaisong, Amonrattana and Aikawa, Chihiro and Nozawa, Takashi and Maruyama, Fumito and Nakagawa, Ichiro
PLoS ONE, ISSN 1932-6203, 01/2017, Volume 12, Issue 1, p. e0170612
Streptococcus pyogenes (group A Streptococcus, or GAS) is a human pathogen that causes a wide range of diseases. For successful colonization within a variety... 
2-COMPONENT SIGNAL-TRANSDUCTION | GRAM-POSITIVE BACTERIA | HYALURONIC-ACID CAPSULE | EPITHELIAL-CELLS | BACILLUS-SUBTILIS | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | PYOGENES | STAPHYLOCOCCUS-AUREUS | RESPONSE REGULATOR | BIOFILM FORMATION | Streptococcus pyogenes - genetics | Stress, Physiological - physiology | Phenotype | Bacterial Proteins - genetics | Adaptation, Physiological - physiology | Repressor Proteins - genetics | Bacterial Proteins - metabolism | Gene Expression Profiling | Streptococcus pyogenes - metabolism | Gene Expression Regulation, Bacterial | Repressor Proteins - metabolism | Physiological aspects | Streptococcus | Research | Adaptation (Biology) | Adaptations | Cell culture | Pathogenesis | Gram-positive bacteria | Environmental changes | Genomes | Kinases | Drug resistance | Streptococcus infections | Proteins | Signal transduction | Clonal deletion | E coli | Deletion | Bacteria | Physiology | Stress response | Pathogens | Cell walls | Cell division | Metabolism | Gene expression | Environmental stress | Strain | Medicine | Studies | Biofilms | Antibiotics | Viability | Colonization | Niches
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13. Full Text CRISPR inhibition of prophage acquisition in streptococcus pyogenes
by Nozawa, Takashi and Furukawa, Nayuta and Aikawa, Chihiro and Watanabe, Takayasu and Haobam, Bijaya and Kurokawa, Ken and Maruyama, Fumito and Nakagawa, Ichiro
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 5, p. e19543
Streptococcus pyogenes, one of the major human pathogens, is a unique species since it has acquired diverse strain-specific virulence properties mainly through... 
EVOLUTIONARY | BACTERIA | GENOME SEQUENCE | IMMUNE-SYSTEM | GROUP-A STREPTOCOCCUS | MULTIDISCIPLINARY SCIENCES | PROVIDES ACQUIRED-RESISTANCE | HORIZONTAL GENE-TRANSFER | PHYLOGENETIC TREES | M3 STRAIN | PROKARYOTES | Inverted Repeat Sequences - genetics | Streptococcus pyogenes - genetics | Genome, Bacterial - genetics | Virus Integration - physiology | Humans | Genetic Loci - genetics | Recombination, Genetic - genetics | Phylogeny | DNA, Intergenic - genetics | Streptococcus pyogenes - virology | Prophages - physiology | Sequence Deletion - genetics | CRISPR | Gene transfer | Fines & penalties | Pathogenesis | Virulence | Phages | Insertion | Genomes | Spacers | Gene sequencing | Streptococcus infections | Streptococcus | Evolutionary biology | Spacer | Phylogenetics | Evolution | Bacteria | Prophages | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid | DNA
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