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Journal of Asian Earth Sciences, ISSN 1367-9120, 01/2020, Volume 187, p. 104080
We studied recent tectonics and present-day geodynamics in the Ninh Thuan nuclear power plants and surrounding regions to reveal seismogenic faults,... 
Horizontal displacement | Recent tectonics | GPS | Capable fault | Maximum Credible Earthquake | Strain rate
Journal Article
Systematic Biology, ISSN 1063-5157, 05/2018, Volume 67, Issue 3, pp. 552 - 558
Abstract The invariable site plus $\Gamma$ model (I$+\Gamma)$ is widely used to model rate heterogeneity among alignment sites in maximum likelihood and... 
Gamma model | Invariable sites | Rate heterogeneity among sites | Phylogenetic inference | Maximum likelihood | Points of View | phylogenetic inference | rate heterogeneity among sites | invariable sites | maximum likelihood
Journal Article
Systematic Biology, ISSN 1063-5157, 11/2016, Volume 65, Issue 6, pp. 997 - 1008
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 05/2013, Volume 30, Issue 5, pp. 1188 - 1195
Nonparametric bootstrap has been a widely used tool in phylogenetic analysis to assess the clade support of phylogenetic trees. However, with the rapidly... 
tree reconstruction | phylogenetic inference | maximum likelihood | nonparametric bootstrap | MAXIMUM-LIKELIHOOD PHYLOGENIES | SUBSTITUTION | DNA-SEQUENCES | PERFORMANCE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MODEL | INFERENCE | TREE-SEARCH | SPACE | EVOLUTIONARY BIOLOGY | PROTEIN EVOLUTION | GENETICS & HEREDITY | SATURATION | Likelihood Functions | Computer Simulation | Phylogeny | Methods
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2015, Volume 32, Issue 1, pp. 268 - 274
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 05/2013, Volume 30, Issue 5, p. 1188
  Nonparametric bootstrap has been a widely used tool in phylogenetic analysis to assess the clade support of phylogenetic trees. However, with the rapidly... 
Simulation | Approximations | Phylogenetics | Amino acids | Bootstrap method
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 02/2018, Volume 35, Issue 2, pp. 518 - 522
The standard bootstrap (SBS), despite being computationally intensive, is widely used in maximum likelihood phylogenetic analyses. We recently proposed the... 
polytomies | model violation | phylogenetic inference | ultrafast bootstrap | maximum likelihood | MAXIMUM-LIKELIHOOD PHYLOGENIES | SUBSTITUTION | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | TIME | EVOLUTIONARY BIOLOGY | TREE-SPACE | EVOLUTION | MODELS | GENES | GENETICS & HEREDITY | CONFIDENCE | Resources
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2016, Volume 44, Issue 1, pp. W232 - W235
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2015, Volume 32, Issue 1, p. 268
  Large phylogenomics data sets require fast tree inference methods, especially for maximum-likelihood (ML) phylogenies. Fast programs exist, but due to... 
Proteins | Genomics | Phylogenetics | Software | Stochastic models | Maximum likelihood method | Heuristic
Journal Article
Journal of Bone and Mineral Research, ISSN 0884-0431, 04/2015, Volume 30, Issue 4, pp. 621 - 629
Journal Article