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ANALYTICAL CHEMISTRY, ISSN 0003-2700, 09/2019, Volume 91, Issue 18, pp. 12021 - 12029
Journal Article
Analytical Chemistry, ISSN 0003-2700, 08/2018, Volume 90, Issue 15, p. 8977
We report the development and availability of a mass spectral reference library for oligosaccharides in human milk. This represents a new variety of spectral... 
Carbohydrates | Data analysis | Fourier transformation | Search algorithms | Liquid chromatography | Spectra | Oligosaccharides | Data bases | Chromatography | Ionization | Precursors | Libraries | Energy of dissociation | Mass spectrometry | Milk
Journal Article
Analytical Chemistry, ISSN 0003-2700, 08/2018, Volume 90, Issue 15, pp. 8977 - 8988
We report the development and availability of a mass spectral reference library for oligosaccharides in human milk. This represents a new variety of spectral... 
CHEMISTRY, ANALYTICAL | PLASMA | SPECTROSCOPY | GLYCANS | ION | MICROBIOTA | SEPARATION | IDENTIFICATION | INHIBITOR | COLOSTRUM | SPECTROMETRY
Journal Article
JOURNAL OF PROTEOME RESEARCH, ISSN 1535-3893, 09/2019, Volume 18, Issue 9, pp. 3223 - 3234
We present a method for FDR estimation of mass spectral library search identifications made by a recently developed method for peptide identification, the... 
target-decoy approach | PEPTIDES | DATABASE | peptide mass spectral library | hybrid mass spectral library search | BIOCHEMICAL RESEARCH METHODS | POSTTRANSLATIONAL MODIFICATIONS | false discovery rate | TOOLS
Journal Article
Analytical Chemistry, ISSN 0003-2700, 10/2014, Volume 86, Issue 20, p. 10231
  An analytical methodology has been developed for extracting recurrent unidentified spectra (RUS) from large GC/MS data sets. Spectra were first extracted... 
Analytical chemistry | Mass spectrometry | Chromatography
Journal Article
Analytical Chemistry (Washington), ISSN 0003-2700, 01/2014, Volume 86, Issue 20, pp. 10231 - 10231
An analytical methodology has been developed for extracting recurrent unidentified spectra (RUS) from large GC/MS data sets. Spectra were first extracted from... 
Urine | Phases | Methodology | Mathematical analysis | Data sets | Mass spectroscopy | Libraries | Spectra
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 02/2018, Volume 17, Issue 2, pp. 846 - 857
Spectral library searching (SLS) is an attractive alternative to sequence database searching (SDS) for peptide identification due to its speed, sensitivity,... 
PeptideProphet algorithm | target-decoy approach | false discovery rate | peptide mass spectral library | SPECTROMETRY DATA | DATABASE | SHOTGUN PROTEOMICS | BIOCHEMICAL RESEARCH METHODS | MS/MS | PROTEIN IDENTIFICATION
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 09/2016, Volume 15, Issue 9, pp. 3180 - 3187
Derivitization of peptides with isobaric tags such as iTRAQ and TMT is widely employed in proteomics due to their compatibility with multiplex quantitative... 
iTRAQ | TMT | spectral conversion | peptide mass spectral library | isobaric tag | QUANTITATION | BIOCHEMICAL RESEARCH METHODS | 8-PLEX | IDENTIFICATION | TAGS | Molecular Weight | Peptide Library | Proteomics - methods | Databases, Protein | Mass Spectrometry | Staining and Labeling
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 03/2016, Volume 15, Issue 3, pp. 1023 - 1032
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) has produced large proteomics data sets from the mass spectrometric interrogation of tumor samples... 
data analysis pipeline | cancer | proteomics data resource | CPTAC | bioinformatics | PEPTIDE IDENTIFICATION | SEARCH | BIOCHEMICAL RESEARCH METHODS | MASS-SPECTROMETRY | Neoplasms - metabolism | Biomarkers, Tumor - metabolism | Neoplasms - diagnosis | Proteome - metabolism | Humans | Proteomics | Proteomics data resource
Journal Article
Molecular and Cellular Proteomics, ISSN 1535-9476, 09/2014, Volume 13, Issue 9, pp. 2435 - 2449
Journal Article
Analytical Chemistry, ISSN 0003-2700, 10/2014, Volume 86, Issue 20, pp. 10231 - 10238
An analytical methodology has been developed for extracting recurrent unidentified spectra (RUS) from large GC/MS data sets. Spectra were first extracted from... 
SYSTEM | CHEMISTRY, ANALYTICAL | CLASSIFICATION | METABOLITES | IDENTIFICATION | Citric Acid - chemistry | Small Molecule Libraries - chemistry | Gas Chromatography-Mass Spectrometry | Humans | Urine - chemistry | Databases | Information management | Management | Mass spectrometry | Analysis
Journal Article
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