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Systematic Biology, ISSN 1063-5157, 05/2018, Volume 67, Issue 3, pp. 475 - 489
Abstract Models of tree evolution have mostly focused on capturing the cladogenesis processes behind speciation. Processes that derive the evolution of genomic... 
Model | Evolution | Alu | Retrotransposition | Models, Biological | Humans | Classification - methods | Phylogeny | Alu Elements - genetics | Genome, Human - genetics | Evolution, Molecular | model | evolution | Regular | retrotransposition
Journal Article
PloS one, 2019, Volume 14, Issue 8, p. e0221068
Clustering homologous sequences based on their similarity is a problem that appears in many bioinformatics applications. The fact that sequences cluster is... 
Journal Article
PLOS ONE, ISSN 1932-6203, 08/2019, Volume 14, Issue 8, p. e0221068
Journal Article
PLOS COMPUTATIONAL BIOLOGY, ISSN 1553-7358, 07/2019, Volume 15, Issue 7, p. e1007007
Journal Article
BIOINFORMATICS, ISSN 1367-4803, 06/2019, Volume 35, Issue 11, pp. 1852 - 1861
Motivation: The ability to simulate epidemics as a function of model parameters allows insights that are unobtainable from real datasets. Further,... 
RATES | DNA-SEQUENCES | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SUBSTITUTIONS | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | DYNAMICS | INFECTION | MODEL | HIV-1 TRANSMISSION | TOOLS
Journal Article
01/2019, ISBN 9781088328354
Phylogenetic trees can be used to study the evolution of any sequence that evolves, including viruses. In a viral epidemic, the history of transmission events... 
Computer science | Bioinformatics | Epidemiology
Dissertation
10/2018
The ability to sample random networks that can accurately represent real social contact networks is essential to the study of viral epidemics. The... 
Physics - Physics and Society
Journal Article
10/2018
Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings... 
Journal Article
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