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Methods in molecular biology (Clifton, N.J.), 2019, Volume 1979, p. 133
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2015, Volume 43, Issue 1, pp. D542 - D548
BioModels (http://www.ebi.ac.uk/biomodels/) is a repository of mathematical models of biological processes. A large set of models is curated to verify both... 
RESOURCES | DATABASE | MAPS | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | SBML | SYSTEMS | QUANTITATIVE KINETIC-MODELS | SOFTWARE | MIRIAM | Internet | Models, Biological | Computer Simulation | Databases, Factual | Database Issue
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 5345 - 9
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) is widely used to identify regulatory regions throughout the genome. However, very... 
MEMORY | T-BET | MULTIDISCIPLINARY SCIENCES | TRANSPOSITION | TRANSCRIPTION | Transcription factors | Chromatin | Profiling | Accessibility | Cryopreservation | Splenocytes | Tagging | Genomes | Regulatory sequences | Transposase | Gene sequencing | Immune system
Journal Article
Current Opinion in Genetics & Development, ISSN 0959-437X, 10/2017, Volume 46, pp. 66 - 76
Journal Article
Journal Article
ISSN 1548-7091, 2017
Single-cell RNA sequencing (scRNA-seq) has become an established and powerful method to investigate transcriptomic cell-to-cell variation, thereby revealing... 
Animals | Sequence Analysis, RNA | Sensitivity and Specificity | Workflow | Mice | Embryonic Stem Cells | Single-Cell Analysis | RNA, Messenger | Freezing | Poly A
Journal Article
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1
Polycomb repressive complexes (PRCs) are important histone modifiers, which silence gene expression; yet, there exists a subset of PRC-bound genes actively... 
RNA-POLYMERASE-II | SINGLE-CELL | CHROMATIN | MULTIDISCIPLINARY SCIENCES | EMBRYONIC STEM-CELLS | GENOME-WIDE | REGULATORY CIRCUITRY | MOUSE ES CELLS | SEQUENCING DATA | BURST SIZE | PLURIPOTENT
Journal Article
GENOME BIOLOGY, ISSN 1474-760X, 04/2019, Volume 20, Issue 1, pp. 70 - 8
Single-cell RNA-seq technologies require library preparation prior to sequencing. Here, we present the first report to compare the cheaper BGISEQ-500 platform... 
Single-cell RNA sequencing | RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Sequencing platforms | Benchmarking scRNA-seq | BGISEQ-500 | Illumina sequencing | Accuracy | DNA polymerase | Nucleotide sequence | Stem cells | Cell lines | Business metrics | Genomes | Gene expression | Comparative analysis | Ribonucleic acid--RNA | Deoxyribonucleic acid--DNA
Journal Article
2013
Regulation of gene expression is critical to govern distinct transcriptional programs for a cell type, lineage specification and developmental stage.... 
Dissertation
Life Science Alliance, ISSN 2575-1077, 2018, Volume 1, Issue 4, p. e201800124
Eukaryotic genomes produce RNAs lacking protein-coding potential, with enigmatic roles. We integrated three approaches to study large intervening noncoding RNA... 
Journal Article
by Manoj, N and Srinivas, V R and Surolia, A and Vijayan, M and Suguna, K and Ravishankar, R and Schwarzenbacher, R and Zeth, K and Diederichs and Kostner, G M and Gries, A and Laggner, P and Prassl, R and Madhusudan and Akamine, Pearl and Xuong, Nguyen-huu and Taylor, Susan S and Sagar, M Bidva and Saikrishnan, K and Roy, S and Purnapatre, K and Handa, P and Varshney, U and Biswal, B K and Sukumar, N and Rao, J K. Mohana and Johnson, A and Pattabhi, Vasantha and Krishna, S Sri and Sastri, Mira and Savithri, H S and Murthy, M R. N and Pillai, Bindu and Kannan and Hosur, M V and Kumar, Mukesh and Patwardhan, Swati and Kannan, K K and Padmanabhaa, B and Sasaki-Sugio, S and Nukaga, M and Matsuzaki, T and Karthikevan, S and Sharma, S and Sharma, A K and Paramasivam, M and Kumar, P and Khan, J A and Yadav, S and Srinivasan, A and Singh, T P and Gourinath, S and Alam, Neelima and Srintvasan, A and Chandra, Vikas and Kaur, Punit and Betzel, Ch and Ghosh, S and Bera, A K and Bhattacharya, S and Chakraborty, S and Pal, A K and Mukhopadhyay, B P and Dey, I and Haldar, U and Baneriee, Asok and Sevcik, Jozef and Solovicova, Adriana and Sekar, K and Sundaralingam, M and Genov, N and Liang, Dong-cai and Jiang, Tao and Zhang, Ji-ping and Chang, Wen-rui and Jahnke, Wolfgang and Blommers, Marcel and Panchal, S C and Hosur, R V and Pillay, Bindu and Mathur, Puniti and Srivatsun, S and Joshi, Ratan Mani and Jaganathan, N R and Chauhan, V S and Atreya, H S and Sahu, S C and Chary, K V. R and Govil, Girjesh and Adjadj, Elisabeth and Quinjou, Éric and Izadi-Pruneyre, Nadia and Blouquit, Yves and Mispelter, Joël and Heyd, Bernadette and Lerat, Guilhem and Milnard, Philippe and Desmadreil, Michel and Lin, Y and Rao, B D. Nageswara and ...
Journal of Biosciences, ISSN 0250-5991, 3/1999, Volume 24, Issue S1, pp. 33 - 198
Journal Article
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