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Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 1 - 15
Temperature shifts trigger genome-wide changes in Escherichia coli’s gene expression. We studied if chromosome integration impacts on a gene’s sensitivity to... 
Temperature | Transcription | Cold shock | Temperature effects | DNA topoisomerase | S gene | Supercoiling | Genomes | Ribonucleic acid--RNA | Gene expression | Chromosomes | Low temperature
Journal Article
PLoS ONE, ISSN 1932-6203, 09/2014, Volume 9, Issue 9, p. e109005
Journal Article
Biophysical Journal, ISSN 0006-3495, 12/2016, Volume 111, Issue 11, p. 2512
  We studied whether nucleoid exclusion contributes to the segregation and retention of Tsr chemoreceptor clusters at the cell poles. Using live time-lapse,... 
E coli | Microscopy | Diffusion | Cells
Journal Article
Bioinformatics, ISSN 1367-4803, 12/2018, Volume 34, Issue 24, pp. 4318 - 4320
Abstract Summary Each cell is a phenotypically unique individual that is influenced by internal and external processes, operating in parallel. To characterize... 
SEGREGATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal Article
JOURNAL OF THE ROYAL SOCIETY INTERFACE, ISSN 1742-5689, 12/2019, Volume 16, Issue 161, p. 20190507
Many genes are spaced closely, allowing coordination without explicit control through shared regulatory elements and molecular interactions. We study the... 
bidirectional promoter | transcription | RATE-LIMITING STEPS | INITIATION | MULTIDISCIPLINARY SCIENCES | gene expression noise | ESCHERICHIA-COLI | POLYMERASE | FACTOR-BINDING | TAGGED RNA NUMBERS | ONE EVENT | GENOME-WIDE | INTERFERENCE | BIDIRECTIONAL PROMOTERS
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, p. 4486
Temperature shifts trigger genome-wide changes in Escherichia coil's gene expression. We studied if chromosome integration impacts on a gene's sensitivity to... 
SHOCK RESPONSE | STOCHASTIC SIMULATION | MESSENGER-RNA | GENE | DNA | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | SIGMA-FACTOR | TRANSCRIPTION INITIATION | H-NS | RNA-POLYMERASE
Journal Article
Biophysical Journal, ISSN 0006-3495, 05/2014, Volume 106, Issue 9, pp. 1928 - 1937
The cytoplasm of Escherichia coli is a crowded, heterogeneous environment. From single cell live imaging, we investigated the spatial kinetics and... 
BACTERIAL CHEMOTAXIS | ORGANIZATION | CELLS | PROTEIN | BIOPHYSICS | TRANSCRIPTION | DYNAMICS | TIME | PROMOTER | EXPRESSION | RNA-POLYMERASE | Protein Binding | Escherichia coli - cytology | Kinetics | Capsid Proteins - metabolism | Models, Biological | RNA - metabolism | RNA | Anisotropy | Escherichia coli | Cell Biophysics
Journal Article
Biophysical Journal, ISSN 0006-3495, 05/2014, Volume 106, Issue 9, p. 1928
  The cytoplasm of Escherichia coli is a crowded, heterogeneous environment. From single cell live imaging, we investigated the spatial kinetics and... 
E coli | RNA-protein interactions | Biophysics | Kinetics | Bacteriology
Journal Article
Physical Biology, ISSN 1478-3967, 05/2018, Volume 15, Issue 5, p. 056002
Cell division in Escherichia coli is morphologically symmetric due to, among other things, the ability of these cells to place the Z-ring at midcell. Studies... 
critical temperatures | Z-ring formation and positioning | Escherichia coli | single-cell microscopy | asymmetry in cell division | asymmetiy in cell division | BACTERIAL-CELL DIVISION | PROTEIN AGGREGATION | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | SEGREGATION | CHROMOSOME | MUTANTS | BIOPHYSICS | FTSZ | NUCLEOID EXCLUSION | DYNAMICS
Journal Article
Physical Biology, ISSN 1478-3975, 05/2018, Volume 15, Issue 5, p. 56002
Journal Article
Journal of Bacteriology, ISSN 0021-9193, 03/2016, Volume 198, Issue 6, p. 898
Escherichia coli segregates protein aggregates to the poles by nucleoid exclusion. Combined with cell divisions, this generates heterogeneous aggregate... 
Proteins | E coli | Antibiotics | Cell division | Bacteriology
Journal Article
BIOINFORMATICS 2016 - 7th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016, 2016, pp. 137 - 141
Conference Proceeding
BIOIMAGING 2017 - 4th International Conference on Bioimaging, Proceedings; Part of 10th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2017, 2017, Volume 2017-, pp. 72 - 76
Conference Proceeding
Conference Proceeding
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