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PLoS Computational Biology, ISSN 1553-734X, 01/2010, Volume 6, Issue 1
Journal Article
Journal of clinical microbiology, 11/2018, Volume 56, Issue 11
The rapid development of sequencing technologies has to led to an explosion of pathogen sequence data, which are increasingly collected as part of routine... 
Humans | Computational Biology | Databases, Genetic | Infection - microbiology | Infection - virology | Phylogeny | Sequence Analysis, DNA | Infection - epidemiology | Molecular Epidemiology | Infection - diagnosis | Data Visualization | Software | Genome, Microbial - genetics
Journal Article
Annual Review of Ecology, Evolution, and Systematics, ISSN 1543-592X, 1/2013, Volume 44, Issue 1, pp. 195 - 215
Journal Article
Bioinformatics, ISSN 1367-4803, 12/2015, Volume 31, Issue 21, pp. 3546 - 3548
Journal Article
Nucleic acids research, 01/2018, Volume 46, Issue 1, p. e5
Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a complex mixture of different modes of evolution. Closely... 
Genome, Bacterial - genetics | Computational Biology - methods | Multigene Family | Reproducibility of Results | Algorithms | Bacteria - classification | Software | Phylogeny | Genomics - methods | Bacteria - genetics | Evolution, Molecular
Journal Article
Journal of Virology, ISSN 0022-538X, 2013, Volume 87, Issue 21, pp. 11821 - 11830
Journal Article
Annual Review of Ecology, Evolution and Systematics, ISSN 1543-592X, 01/2013, Volume 44, pp. 195 - 195
To learn about the past from a sample of genomic sequences, one needs to understand how evolutionary processes shape genetic diversity. Most population... 
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2018, Volume 46, Issue 1, pp. e5 - e5
Abstract Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a complex mixture of different modes of evolution.... 
EVOLUTION | PHYLOGENIES | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROTEIN FAMILIES | ALGORITHM | MACROLIDE | INFERENCE | HORIZONTAL GENE-TRANSFER | DISTRIBUTED GENOME | PROCHLOROCOCCUS | Methods Online
Journal Article
PLOS COMPUTATIONAL BIOLOGY, ISSN 1553-7358, 01/2010, Volume 6, Issue 1, p. e1000660
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 01/2013, Volume 110, Issue 2, p. 437
  The genetic diversity of a species is shaped by its recent evolutionary history and can be used to infer demographic events or selective sweeps. Most... 
Demographics | Genealogy | Footprints | Genetic diversity
Journal Article
Journal of Clinical Microbiology, ISSN 0095-1137, 11/2018, Volume 56, Issue 11
The rapid development of sequencing technologies has to led to an explosion of pathogen sequence data, which are increasingly collected as part of routine... 
Phylogenetic analysis | Molecular epidemiology | Bioinformatics | molecular epidemiology | phylogenetic analysis | EVOLUTION | TUBERCULOSIS | bioinformatics | RESISTANCE | MICROBIOLOGY | STAPHYLOCOCCUS-AUREUS | GENOME
Journal Article
Journal of Virology, ISSN 0022-538X, 11/2013, Volume 87, Issue 21, pp. 11843 - 11850
Journal Article
Journal Article
PLoS Genetics, ISSN 1553-7390, 2014, Volume 10, Issue 3, p. e1004222
Journal Article
Genetics, ISSN 0016-6731, 08/2012, Volume 191, Issue 4, pp. 1283 - 1293
The accumulation of deleterious mutations is driven by rare fluctuations that lead to the loss of all mutation free individuals, a process known as Muller's... 
SPEED | ASEXUAL POPULATIONS | WAVE | EVOLUTION | ADAPTATION | GENETICS & HEREDITY | ACCUMULATION | MODEL | SELECTION | SEXUAL POPULATIONS | DELETERIOUS MUTATIONS | Genetic Drift | Algorithms | Genetic Fitness | Computer Simulation | Mutation Rate | Models, Genetic | Mutation | Evolution, Molecular | Lethal mutation | Stochastic analysis | Usage | Research | Population genetics | Genomes | Stochastic models | Chromosomes
Journal Article
Virus Research, ISSN 0168-1702, 07/2017, Volume 239, pp. 106 - 114
Deep sequencing is a powerful and cost-effective tool to characterize the genetic diversity and evolution of virus populations. While modern sequencing... 
Indel errors | Amplification bias | Population sequencing | TRANSMISSION | AMPLIFICATION | VIROLOGY | ALIGNMENT | EXPRESSION | TOOL | HIV (Viruses) | Developmental biology | Genomics | Cells | Genetic research | Genomes | Biological diversity
Journal Article
Reviews of Modern Physics, ISSN 0034-6861, 11/2011, Volume 83, Issue 4, pp. 1283 - 1300
Journal Article
Genetics, ISSN 0016-6731, 08/2012, Volume 191, Issue 4, pp. 1283 - 1293
The accumulation of deleterious mutations is driven by rare fluctuations that lead to the loss of all mutation free individuals, a process known as Muller’s... 
Investigations
Journal Article