X
Search Filters
Format Format
Format Format
X
Sort by Item Count (A-Z)
Filter by Count
Journal Article (242) 242
Publication (44) 44
Book / eBook (27) 27
Conference Proceeding (24) 24
Newspaper Article (21) 21
Book Chapter (5) 5
Dissertation (3) 3
Magazine Article (2) 2
Book Review (1) 1
Patent (1) 1
Streaming Audio (1) 1
more...
Subjects Subjects
Subjects Subjects
X
Sort by Item Count (A-Z)
Filter by Count
biochemical research methods (93) 93
index medicus (89) 89
algorithms (71) 71
biotechnology & applied microbiology (61) 61
humans (50) 50
mathematical & computational biology (50) 50
software (42) 42
bioinformatics (39) 39
artificial intelligence (33) 33
proteins (32) 32
proteomics (31) 31
database (29) 29
article (28) 28
research (27) 27
databases, protein (25) 25
genomics (25) 25
mass spectrometry (25) 25
animals (24) 24
peptide identification (24) 24
computational biology (23) 23
computational biology - methods (23) 23
proteomics - methods (23) 23
reproducibility of results (23) 23
proteins - chemistry (22) 22
amino acid sequence (21) 21
peptides (21) 21
chromatin (20) 20
genomes (20) 20
statistics & probability (20) 20
natural sciences (19) 19
biology (18) 18
computer science, interdisciplinary applications (18) 18
sequence analysis, protein - methods (18) 18
studies (18) 18
naturvetenskap (17) 17
sequences (17) 17
binding sites (16) 16
bioinformatik (16) 16
genome (16) 16
methods (16) 16
molecular sequence data (16) 16
tandem mass spectrometry - methods (16) 16
genetics & heredity (15) 15
machine learning (15) 15
usage (15) 15
algorithm (14) 14
biochemistry & molecular biology (14) 14
computer and information sciences (14) 14
data- och informationsvetenskap (14) 14
discovery (14) 14
gene expression (14) 14
genes (14) 14
models, statistical (14) 14
computer simulation (13) 13
dna (13) 13
identification (13) 13
ms/ms (13) 13
shotgun proteomics (13) 13
molecular biology (12) 12
protein identification (12) 12
sequence alignment - methods (12) 12
yeast (12) 12
mathematics, interdisciplinary applications (11) 11
model (11) 11
organization (11) 11
pattern recognition, automated - methods (11) 11
proteins - analysis (11) 11
calibration (10) 10
deoxyribonucleic acid--dna (10) 10
dna - chemistry (10) 10
genetic aspects (10) 10
human genome (10) 10
mass spectrometry - methods (10) 10
models, genetic (10) 10
databases (9) 9
false discovery rate (9) 9
internet (9) 9
original papers (9) 9
peptides - analysis (9) 9
peptides - chemistry (9) 9
prediction (9) 9
protein (9) 9
proteins - genetics (9) 9
research article (9) 9
spectrometry (9) 9
biochemistry (8) 8
classification (8) 8
computer science (8) 8
database search (8) 8
databases, genetic (8) 8
genome, human (8) 8
life sciences (8) 8
mice (8) 8
models, molecular (8) 8
multidisciplinary sciences (8) 8
protein identifications (8) 8
proteins - classification (8) 8
sensitivity and specificity (8) 8
statistical significance (8) 8
tandem mass spectrometry (8) 8
more...
Library Location Library Location
Library Location Library Location
X
Sort by Item Count (A-Z)
Filter by Count
Robarts - Stacks (9) 9
UTL at Downsview - May be requested (7) 7
Gerstein Science - Stacks (6) 6
UofT at Mississauga - Stacks (3) 3
Collection Dvlpm't (Acquisitions) - Vendor file (1) 1
Faculty of Information - Stacks (1) 1
Law (Bora Laskin) - Stacks (1) 1
OISE - Stacks (1) 1
Online Resources - Online (1) 1
Robarts - Searching (1) 1
Royal Ontario Museum - Stacks (1) 1
St. Michael's College (John M. Kelly) - 2nd Floor (1) 1
Thomas Fisher Rare Book - Rare Book (1) 1
Trinity College (John W Graham) - Churchill (1) 1
Trinity College (John W Graham) - Storage (1) 1
Victoria University E.J. Pratt - Stacks (1) 1
more...
Language Language
Publication Date Publication Date
Click on a bar to filter by decade
Slide to change publication date range


GENOME BIOLOGY, ISSN 1474-760X, 08/2019, Volume 20, Issue 1, pp. 180 - 14
Semi-automated genome annotation methods such as Segway take as input a set of genome-wide measurements such as of histone modification or DNA accessibility... 
Chromatin | CHROMATIN-STRUCTURE | Genomics | STATE | DISCOVERY | SYSTEMATIC ANNOTATION | PATTERN | MODELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Machine learning | REGIONS | GENES | GENETICS & HEREDITY | SEGMENTATION | DOMAINS | Medical research | Automation | Encyclopedias | Genomes | Regulatory sequences | Datasets | Computer science | Algorithms | Annotations | Artificial intelligence | Deoxyribonucleic acid--DNA
Journal Article
JOURNAL OF PROTEOME RESEARCH, ISSN 1535-3893, 10/2019, Volume 18, Issue 10, pp. 3792 - 3799
Open modification searching (OMS) is a powerful search strategy to identify peptides with any type of modification. OMS works by using a very wide precursor... 
proteomics | PEPTIDE IDENTIFICATION | PROTEOME | BIOCHEMICAL RESEARCH METHODS | approximate nearest neighbor indexing | post-translational modification | feature hashing | DATABASE | spectral library | graphics processing unit | mass spectrometry | open modification searching | SPECTROMETRY
Journal Article
JOURNAL OF PROTEOME RESEARCH, ISSN 1535-3893, 09/2019, Volume 18, Issue 9, pp. 3353 - 3359
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 09/2019, Volume 47, Issue 15, pp. 7989 - 8003
Abstract Non-homologous end-joining (NHEJ) plays an important role in double-strand break (DSB) repair of DNA. Recent studies have shown that the error... 
ELEMENTS | CHOICE | ESSENTIAL GENES | SPECIFICITY | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | CRISPR-CAS9 | CAS9 | IDENTIFICATION | GENOME | Sequence Deletion | Base Sequence | DNA End-Joining Repair | Humans | CRISPR-Cas Systems | Models, Genetic | Mutation | DNA Breaks, Double-Stranded | DNA Cleavage | Gene Editing | Genome, Human - genetics | Genome Integrity, Repair and
Journal Article
07/2019
Competition-based FDR control has been commonly used for over a decade in the computational mass spectrometry community (Elias and Gygi, 2007). Recently, the... 
Journal Article
IEEE/ACM Transactions on Computational Biology and Bioinformatics, ISSN 1545-5963, 07/2019, Volume 16, Issue 4, pp. 1168 - 1181
Motivation: Identification of spectra produced by a shotgun proteomics mass spectrometry experiment is commonly performed by searching the observed spectra... 
Greedy algorithms | Databases | Peptides | Computational modeling | submodularity | Proteomics | Mass spectroscopy | Ions | mass spectrometry | Bipartite graph | proteomics | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | MATHEMATICS, INTERDISCIPLINARY APPLICATIONS | MATROIDS | APPROXIMATIONS | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | STATISTICS & PROBABILITY
Journal Article
06/2019
We present apricot, an open source Python package for selecting representative subsets from large data sets using submodular optimization. The package... 
Journal Article
by Peden, Carol and Peden, Carol J and Stephens, Tim and Martin, Michael and Martin, Graham and Kahan, Brennan and Kahan, Brennan C and Thomson, Ann and Rivett, Kate and Wells, Duncan and Wells, John and Richardson, Peter and Richardson, Gerry and Kerry, Sally and Bion, Julian and Pearse, Rupert M and Pearse, Rupert and Brett, Stephen and Ackland, Gareth and Grocott, Mike and Holt, Peter and Robert, Glenn and Ukoumunne, Obioha and Waring, Justin and Everingham, Kirsty and Phull, Mandeep and Cromwell, David and Evley, Rachel and Lilford, Richard and Kocman, David and Asaria, Miqdad and Tarrant, Carolyn and Yang, Fan and Abraham, Ajit and Bothma, Pieter and Conway, Daniel and Stapleton, Clare and Edwards, Jennifer and Edwards, Mark and Minto, Gary and Saunders, David and Owen, Tom and Waldmann, Carl and Hayden, Paul and Gillies, Michael and Tighe, Sean and Smith, Hannah and Smith, Neil and Mythen, Monty and Murray, Therese and Murray, Dave and Murray, Diane and Murray, David and Lobo, Dileep and Leuwer, Martin and Kirk-Bayley, Justin and Howell, Simon and Gordon, Anthony and Anderson, Iain and Lourtie, Jose and Walker, Simon and Drake, Sharon and Watson, Geoff and Watson, Nick and Watson, Nicholas and Watson, Mark and Szakmany, Tamas and Sutcliffe, Robert and Mahajan, Ravi and Girling, Alan and Forbes, Gordon and Faiz, Omar and Blunt, Mark and Singh, Jagdeep and Singh, Satish and Singh, Surjait and Steel, Alistair and Wong, Kate and Cabreros, Leilani and Chitre, Vivek and Obideyi, Ayodele and Ali, Dhiraj and Blenk, Karl and Broad, Dan and Brodbeck, Andreas and Dumpala, Rajesh and Engel, Arnth and Ganepola, Ranjit and Garg, Sudha and Gay, Mike and Karlikowsk, Michael and Lams, Edward and Millican, Dean and Misane, Inga and Mull, Ajaya and Naik, Veena and Pushpa, Nathan and Nutt, Chris and Sagadai, Saravanna and Stuart, Hazel and ... and Enhanced Peri-Operative Care for High-risk patients (EPOCH) trial group
The Lancet, ISSN 0140-6736, 06/2019, Volume 393, Issue 10187, pp. 2213 - 2221
Emergency abdominal surgery is associated with poor patient outcomes. We studied the effectiveness of a national quality improvement (QI) programme to... 
Intervention | Medical personnel | Abdominal surgery | Systemic diseases | Health | Decision making | Health services | Mortality | Health care policy | Critical care | Clinical trials | Emergency medical care | Survival | Patients | Clinical outcomes | Abdomen | Randomization | Hospitals | Motivation | Surgery | Quality control | Clusters | Emergency medical services | Quality of care
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 02/2019, Volume 18, Issue 2, pp. 585 - 593
Decoy database search with target-decoy competition (TDC) provides an intuitive, easy-to-implement method for estimating the false discovery rate (FDR)... 
mass spectrometry | false discovery rate | spectrum identification | P-VALUES | PROTEIN IDENTIFICATIONS | PEPTIDE IDENTIFICATION | STATISTICAL SIGNIFICANCE | BIOCHEMICAL RESEARCH METHODS | SPECTRA | MS/MS | PROTEOMICS | PROBABILITIES
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 01/2019, Volume 18, Issue 1, pp. 86 - 94
In data independent acquisition (DIA) mass spectrometry, precursor scans are interleaved with wide-window fragmentation scans, resulting in complex... 
precursor inference | interference | data-dependent acquisition | regression | data-independent acquisition | DECONVOLUTION | PROTEOME | BIOCHEMICAL RESEARCH METHODS | SELECTION | SOFTWARE | TOOLS
Journal Article
Bioinformatics (Oxford, England), 12/2018
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 1 - 15
The Encyclopedia of DNA Elements (ENCODE) and the Roadmap Epigenomics Project seek to characterize the epigenome in diverse cell types using assays that... 
DYNAMICS | ELEMENTS | ANNOTATION | MULTIDISCIPLINARY SCIENCES | Cloud computing | Freeware | Chromatin | Encyclopedias | Histones | Decomposition | Source code | Bioinformatics | Deoxyribonucleic acid--DNA
Journal Article