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microbiology (85) 85
index medicus (54) 54
phylogeny (52) 52
molecular sequence data (41) 41
rna, ribosomal, 16s - genetics (33) 33
bacteria (32) 32
japan (29) 29
seawater - microbiology (29) 29
diversity (25) 25
archaea - genetics (23) 23
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biotechnology & applied microbiology (21) 21
ecosystem (20) 20
sequence analysis, dna (20) 20
geologic sediments - microbiology (18) 18
water microbiology (18) 18
archaea (17) 17
bacteria - genetics (16) 16
dna, bacterial - genetics (16) 16
methane (16) 16
microorganisms (16) 16
archaea - classification (15) 15
epsilon-proteobacteria (15) 15
genes (15) 15
genomes (15) 15
multidisciplinary sciences (15) 15
temperature (15) 15
viruses (15) 15
base composition (14) 14
microbial ecology (14) 14
sp-nov (14) 14
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rna (13) 13
base sequence (12) 12
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research (12) 12
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gen. nov (11) 11
life sciences (11) 11
methane - metabolism (11) 11
oceans and seas (11) 11
physiological aspects (11) 11
archaea - metabolism (10) 10
bacterial typing techniques (10) 10
biotechnology (10) 10
dna, archaeal - genetics (10) 10
dna, ribosomal - genetics (10) 10
environments (10) 10
pacific ocean (10) 10
carbon (9) 9
deep-sea hydrothermal vent (9) 9
microbial communities (9) 9
mid-atlantic ridge (9) 9
okinawa trough (9) 9
oxidation-reduction (9) 9
animals (8) 8
archaea - isolation & purification (8) 8
biochemistry (8) 8
culture media (8) 8
dna (8) 8
epsilonproteobacteria - genetics (8) 8
genes, rrna (8) 8
genetic aspects (8) 8
genetic variation (8) 8
metagenomics (8) 8
oxidation (8) 8
phylogenetics (8) 8
seawater (8) 8
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anaerobiosis (7) 7
bacteria - isolation & purification (7) 7
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biochemistry & molecular biology (7) 7
deep-sea (7) 7
hydrothermal vent ecology (7) 7
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ocean (7) 7
oxidoreductases - genetics (7) 7
proteins (7) 7
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sequence (7) 7
thermophile (7) 7
amino acid sequence (6) 6
archaeal proteins - genetics (6) 6
biological sciences (6) 6
biosphere (6) 6
carbon dioxide (6) 6
chemistry (6) 6
chemolithoautotroph (6) 6
cladistic analysis (6) 6
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earth (6) 6
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1. Full Text Culture-Dependent and -Independent Characterization of Microbial Communities Associated with a Shallow Submarine Hydrothermal System Occurring within a Coral Reef off Taketomi Island, Japan
by Hisako Hirayama and Michinari Sunamura and Ken Takai and Takuro Nunoura and Takuro Noguchi and Hanako Oida and Yasuo Furushima and Hiroyuki Yamamoto and Tamotsu Oomori and Koki Horikoshi
Applied and Environmental Microbiology, ISSN 0099-2240, 12/2007, Volume 73, Issue 23, pp. 7642 - 7656
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
GEN. NOV | EPSILON-PROTEOBACTERIA | SULFUR-OXIDIZING BACTERIA | HELLENIC VOLCANIC ARC | MID-ATLANTIC RIDGE | OLIGODEOXYNUCLEOTIDE PROBES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MICROBIOLOGY | AEGEAN SEA MILOS | SP-NOV | TARGETED OLIGONUCLEOTIDE PROBES | PAPUA-NEW-GUINEA | Deltaproteobacteria - metabolism | Geography | Temperature | Gammaproteobacteria - metabolism | Molecular Sequence Data | Gammaproteobacteria - classification | Phylogeny | Archaea - classification | Culture Media - metabolism | Ecosystem | Bacteria - classification | Gammaproteobacteria - genetics | Hydrogen - metabolism | Sulfur - metabolism | Bacteria - metabolism | Seawater - microbiology | Epsilonproteobacteria - genetics | Methane - metabolism | Oxidation-Reduction | Anthozoa - microbiology | Japan | Deltaproteobacteria - classification | In Situ Hybridization, Fluorescence | Bacteria - genetics | Epsilonproteobacteria - metabolism | Archaea - metabolism | Animals | Deltaproteobacteria - genetics | Epsilonproteobacteria - classification | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Water Microbiology | Natural resources | Environmental aspects | Methanobacteriaceae | Microorganisms | Hydrothermal systems (Geology) | Microbial Ecology
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2. Full Text Asgard archaea illuminate the origin of eukaryotic cellular complexity
by Zaremba-Niedzwiedzka, Katarzyna and Caceres, Eva F and Saw, Jimmy H and Bäckström, DIsa and Juzokaite, Lina and Vancaester, Emmelien and Seitz, Kiley W and Anantharaman, Karthik and Starnawski, Piotr and Kjeldsen, Kasper U and Stott, Matthew B and Nunoura, Takuro and Banfield, Jillian F and Schramm, Andreas and Baker, Brett J and Spang, Anja and Ettema, Thijs J. G and Science for Life Laboratory, SciLifeLab and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Molekylär evolution and Uppsala universitet and Institutionen för cell- och molekylärbiologi
Nature, ISSN 0028-0836, 01/2017, Volume 541, Issue 7637, pp. 353 - 358
The origin and cellular complexity of eukaryotes represent a major enigma in biology. Current data support scenarios in which an archaeal host cell and an... 
MAXIMUM-LIKELIHOOD PHYLOGENIES | SINGLE-CELL | DOMAIN | EVOLUTION | DATABASE | RECONSTRUCTION | MULTIDISCIPLINARY SCIENCES | SEQUENCE | MITOCHONDRIA | MEMBRANE-TRAFFICKING SYSTEM | LIFE | Archaeal Proteins - metabolism | Eukaryota - cytology | Metagenomics | Eukaryota - classification | Archaea - cytology | COP-Coated Vesicles - metabolism | Eukaryotic Cells - metabolism | Phylogeny | Archaea - classification | Eukaryota - genetics | Eukaryotic Cells - classification | Models, Biological | Genome, Archaeal - genetics | Archaeal Proteins - genetics | Archaea - genetics | Biological Transport - genetics | Eukaryotic Cells - cytology | Evolution, Molecular | Eukaryotes | Genetic aspects | Research | Archaeabacteria | Genomics | Analysis | National parks | Proteins | Signal transduction | Membranes | Genes | Phylogenetics | Evolution | Genomes | Sediments | Acquisitions & mergers | Biological Sciences | Evolutionsbiologi | Naturvetenskap | Natural Sciences | Evolutionary Biology | Biologiska vetenskaper
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3. Full Text Microbial Community in a Sediment-Hosted CO₂ Lake of the Southern Okinawa Trough Hydrothermal System
by Fumio Inagaki and Marcel M. M. Kuypers and Urumu Tsunogai and Jun-ichiro Ishibashi and Ko-ichi Nakamura and Tina Treude and Satoru Ohkubo and Miwako Nakaseama and Kaul Gena and Hitoshi Chiba and Hisako Hirayama and Takuro Nunoura and Ken Takai and Bo B. Jørgensen and Koki Horikoshi and Antje Boetius
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2006, Volume 103, Issue 38, pp. 14164 - 14169
Increasing levels of CO₂ in the atmosphere are expected to cause climatic change with negative effects on the earth's ecosystems and human society.... 
Methane | Liquids | Carbon dioxide emissions | Carbon dioxide | Pavements | Marine ecosystems | Lipids | Sediment core samples | Sediments | Hydrates | Chemolithotroph | Liquid CO | Anaerobic oxidation of methane | hydrate | disposal | METHANE-OXIDIZING ARCHAEA | MULTIDISCIPLINARY SCIENCES | anaerobic oxidation of methane | HYDRATE FORMATION | liquid CO2 | FATTY-ACIDS | FOSSIL-FUEL CO2 | MARINE-SEDIMENTS | PACIFIC-OCEAN | ANAEROBIC OXIDATION | DEEP-SEA | CO2 hydrate | CO2 disposal | CARBON-DIOXIDE | chemolithotroph | SULFATE-REDUCING BACTERIA | Biomarkers - metabolism | Carbon Dioxide - chemistry | Carbon Dioxide - metabolism | Humans | Molecular Sequence Data | Seawater - chemistry | Phylogeny | Archaea - classification | Geologic Sediments - microbiology | Archaea - metabolism | Lipids - chemistry | Ecosystem | Geologic Sediments - chemistry | Environment | Archaea - genetics | Pacific Ocean | Biomarkers - chemistry | Water Microbiology | Biological Sciences
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4. Full Text Cell Proliferation at 122°C and Isotopically Heavy CH₄ Production by a Hyperthermophilic Methanogen under High-Pressure Cultivation
by Ken Takai and Kentaro Nakamura and Tomohiro Toki and Urumu Tsunogai and Masayuki Miyazaki and Junichi Miyazaki and Hisako Hirayama and Satoshi Nakagawa and Takuro Nunoura and Koki Horikoshi
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2008, Volume 105, Issue 31, pp. 10949 - 10954
We have developed a technique for cultivation of chemolithoautotrophs under high hydrostatic pressures that is successfully applicable to various types of... 
Methane | Cell growth | Fractionation | Hydrostatic pressure | Methanogens | Isotope fractionation | High temperature | Methane production | Carbon | Carbon isotopes | Carbon isotope fractionation | Hyperthermophile | Deep-sea hydrothermal vent | Piezophilic | Methanogenesis | carbon isotope fractionation | Biological Sciences | piezophilic | methanogenesis | deep-sea hydrothermal vent | hyperthermophile
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5. Full Text Hadal biosphere
: Insight into the microbial ecosystem in the deepest ocean on Earth
by Takuro Nunoura and Yoshihiro Takaki and Miho Hirai and Shigeru Shimamura and Akiko Makabe and Osamu Koide and Tohru Kikuchi and Junichi Miyazaki and Keisuke Koba and Naohiro Yoshida and Michinari Sunamura and Ken Takai
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2015, Volume 112, Issue 11, pp. E1230 - E1236
Hadal oceans at water depths below 6,000 m are the least-explored aquatic biosphere. The Challenger Deep, located in the western equatorial Pacific, with a... 
Trench | Hadal | Challenger deep | Niche separation | Nitrification | BACTERIA | trench | MARIANA TRENCH | MULTIDISCIPLINARY SCIENCES | Challenger Deep | DARK | niche separation | NITRIFYING ARCHAEA | FRESH-WATER | ABUNDANCE | hadal | COMMUNITY | nitrification | DIVERSITY | AMMONIA OXIDATION | Oceans and Seas | Temperature | Molecular Sequence Data | Heterotrophic Processes | Bacteria - genetics | RNA, Ribosomal - genetics | Salinity | Ribosome Subunits, Small - genetics | Bacteria - growth & development | Prokaryotic Cells - metabolism | Ecosystem | Archaea - genetics | Earth (Planet) | Archaea - growth & development | Research | Deep ecology | Biogeochemical cycles | Analysis | Biological Sciences | PNAS Plus
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6. Full Text Metagenomic Analysis of Viral Communities in (Hado)Pelagic Sediments
by Yoshida, Mitsuhiro and Takaki, Yoshihiro and Eitoku, Masamitsu and Nunoura, Takuro and Takai, Ken
PLoS ONE, ISSN 1932-6203, 02/2013, Volume 8, Issue 2, p. e57271
In this study, we analyzed viral metagenomes (viromes) in the sedimentary habitats of three geographically and geologically distinct (hado)pelagic environments... 
MICROCYSTIS-AERUGINOSA | GENOMES | MULTIDISCIPLINARY SCIENCES | MARINE VIRUSES | DIVERSITY | SINGLE-STRANDED-DNA | BACTERIAL | MULTIPLE SEQUENCE ALIGNMENT | HUMAN FECES | ECOSYSTEMS | FRESH-WATER | DNA, Single-Stranded - genetics | Genome, Viral | Metagenomics | Microviridae - classification | RNA, Ribosomal, 16S - genetics | Genetic Markers | Phylogeny | DNA, Viral - genetics | Geologic Sediments - virology | Microviridae - genetics | Viral proteins | Genetic markers | Marine sediments | VP1 protein | Capsid protein | Single-stranded DNA | Ecosystems | Genes | Viruses | Genomes | Gene sequencing | Eukaryotes | Libraries | Genotypes | Deoxyribonucleic acid--DNA | NR protein | Nucleotide sequence | Abundance | Earth science | Sediments | Water depth | Carbon | Ocean floor | Studies | Pelagic sediments | Genetic testing | Harbors | Methods | Viral infections | Deoxyribonucleic acid | DNA
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7. Full Text Genome‐enabled metabolic reconstruction of dominant chemosynthetic colonizers in deep‐sea massive sulfide deposits
by Kato, Shingo and Shibuya, Takazo and Takaki, Yoshihiro and Hirai, Miho and Nunoura, Takuro and Suzuki, Katsuhiko
Environmental Microbiology, ISSN 1462-2912, 02/2018, Volume 20, Issue 2, pp. 862 - 877
Deep‐sea massive sulfide deposits remaining after ceasing of hydrothermal activity potentially provide energy for a chemosynthetic ecosystem in the dark, cold... 
OXIDATION | PYRITE FORMATION | IRON SULFIDE | HYDROTHERMAL ACTIVITY | MICROBIOLOGY | EXTRACELLULAR ELECTRON-TRANSFER | ENERGY-SOURCE | SULFUR | DESULFOBULBUS-PROPIONICUS | SP NOV | MULTIPLE SEQUENCE ALIGNMENT | Genetic research | Sulfides | Hydrothermal vent ecology | Analysis | Genomics | Sulfide | Microbial activity | Thiosulfates | Metals | Genes | Carbon dioxide | Genomes | Hydrothermal fields | Sulphur | Gene sequencing | Marine environment | Earth | Microorganisms | Energy | Bacteria | Oxidation | Sulfur | Carbon capture and storage | Seawater | Drilling | Nitrogenation | Deposits | Chemical reactions | Deep water | Metabolism | Hydrothermal activity | Ocean floor | Metal sulfides | Internal energy | Sulphides | Environments | Thiosulfate | Marine ecosystems | Sea water
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8. Full Text Biogeographical Distribution and Diversity of Microbes in Methane Hydrate-Bearing Deep Marine Sediments on the Pacific Ocean Margin
by Fumio Inagaki and Takuro Nunoura and Satoshi Nakagawa and Andreas Teske and Mark Lever and Antje Lauer and Masae Suzuki and Ken Takai and Mark Delwiche and Frederick S. Colwell and Kenneth H. Nealson and Koki Horikoshi and Steven D'Hondt and Bo B. Jørgensen
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2006, Volume 103, Issue 8, pp. 2815 - 2820
The deep subseafloor biosphere is among the least-understood habitats on Earth, even though the huge microbial biomass therein plays an important role for... 
Methane | Marine sediments | Oceans | rRNA genes | Methanogens | Phylogenetics | Chloroflexi | Bacteria | Sediments | Hydrates | Microbial diversity | Deep biosphere | 16S rRNA gene | 165 rRNA gene | deep biosphere | GAS HYDRATE | SUBSEAFLOOR SEDIMENTS | CASCADIA MARGIN | MULTIDISCIPLINARY SCIENCES | SUBSURFACE SEDIMENTS | COMMUNITIES | MOLECULAR ANALYSIS | BACTERIAL DIVERSITY | SP-NOV | microbial diversity | NANKAI TROUGH | FORE-ARC BASIN | Methane - analysis | Molecular Sequence Data | Archaea - isolation & purification | Archaea - classification | Bacteria - genetics | Genetic Variation | Marine Biology | Geologic Sediments - microbiology | Bacteria - isolation & purification | Base Sequence | Bacteria - classification | Geologic Sediments - chemistry | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Pacific Ocean | Water Microbiology | DNA, Ribosomal - genetics | Research | Biological Sciences
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9. Full Text Biochemical and genetic characterization of [beta]-1,3 glucanase from a deep subseafloor Laceyella putida
by Kobayashi, Tohru and Uchimura, Kohsuke and Kubota, Takaaki and Nunoura, Takuro and Deguchi, Shigeru
Applied Microbiology and Biotechnology, ISSN 0175-7598, 01/2016, Volume 100, Issue 1, p. 203
A -1,3-glucanase (LpGluA) of deep subseafloor Laceyella putida JAM FM3001 was purified to homogeneity from culture broth. The molecular mass of the enzyme was... 
Fungi, Pathogenic | Genetic aspects | Gene expression | Observations | Studies | Enzymes | Biotechnology | Biochemistry | Ocean bottom
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10. Full Text A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
by Nunoura, Takuro and Chikaraishi, Yoshito and Izaki, Rikihisa and Suwa, Takashi and Sato, Takaaki and Harada, Takeshi and Mori, Koji and Kato, Yumiko and Miyazaki, Masayuki and Shimamura, Shigeru and Yanagawa, Katsunori and Shuto, Aya and Ohkouchi, Naohiko and Fujita, Nobuyuki and Takaki, Yoshihiro and Atomi, Haruyuki and Takai, Ken
Science, ISSN 0036-8075, 02/2018, Volume 359, Issue 6375, pp. 559 - 563
Inorganic carbon fixation is essential to sustain life on Earth, and the reductive tricarboxylic acid (rTCA) cycle is one of the most ancient carbon fixation... 
SYNTHASE | EVOLUTION | ENZYME | ACID | MULTIDISCIPLINARY SCIENCES | ATP-CITRATE LYASE | PURIFICATION | AUTOTROPHIC CARBON FIXATION | Bacteria - metabolism | Carbon Cycle | Chemoautotrophic Growth | Citric Acid Cycle | Carboxylic acids | Chemical properties | Tricarboxylic acid cycle | Anaerobic microorganisms | Carbon dioxide | Variations | Genomes | Carbon | Gene sequencing | Thermophilic bacteria | Microorganisms | Fixation | Acids | Bacteria | Coenzyme A | Catalysis | Inorganic carbon | Ferredoxin | Carbon fixation | ATP | Carbon sources
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11. Full Text Nitrate Isotope Distribution in the Subarctic and Subtropical North Pacific
by Yoshikawa, Chisato and Makabe, Akiko and Matsui, Yohei and Nunoura, Takuro and Ohkouchi, Naohiko
Geochemistry, Geophysics, Geosystems, ISSN 1525-2027, 07/2018, Volume 19, Issue 7, pp. 2212 - 2224
Nitrogen and oxygen isotopic compositions of nitrate (δ 15 N Nitrate and δ 18 O Nitrate ) were determined along 47°N in the subarctic North Pacific and 149°E... 
nitrogen fixation | denitrification | nitrogen isotopes | North Pacific | OCEAN | WESTERN | INTERMEDIATE WATER FORMATION | SEAWATER | FRESH-WATER | SEA | GEOCHEMISTRY & GEOPHYSICS | NITROGEN-FIXATION | N-ASTERISK | N-2 FIXATION | DENITRIFIER METHOD | Distillation | Nutrients (mineral) | Chlorophyll | Organic matter | Oxygen | Water column | Ocean circulation | Nitrates | Nitrogen isotopes | Intermediate water | Isotopic composition | Chlorophylls | Intermediate water masses | Utilization | Fixation | Denitrification | Nutrients | Kinetics
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12. Full Text Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
by Pachiadaki, Maria G and Sintes, Eva and Bergauer, Kristin and Brown, Julia M and Record, Nicholas R and Swan, Brandon K and Mathyer, Mary Elizabeth and Hallam, Steven J and Lopez-Garcia, Purificacion and Takaki, Yoshihiro and Nunoura, Takuro and Woyke, Tanja and Herndl, Gerhard J and Stepanauskas, Ramunas and Univ. of California, Oakland, CA (United States) and Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
Science, ISSN 0036-8075, 11/2017, Volume 358, Issue 6366, pp. 1046 - 1051
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact on global carbon cycling and ecological relationships in the ocean's... 
OXIDATION | OXYGEN MINIMUM ZONE | AUTOTROPHY | PHYSIOLOGY | INTERIOR | EASTERN | METAGENOME | RESPIRATION | MULTIDISCIPLINARY SCIENCES | GEN-NOV-SP | NITROSPIRA | Carbon - metabolism | Metagenomics | Bacteria - metabolism | Oceans and Seas | Seawater - microbiology | Carbon Cycle | Oxidation-Reduction | Bacteria - cytology | Nitrites - metabolism | In Situ Hybridization, Fluorescence | Single-Cell Analysis | Bacteria - genetics | Bacteria | Analysis | Carbon cycle (Biogeochemistry) | Tricarboxylic acid cycle | Darkness | Carbohydrates | Ammonium | Prokaryotes | Oxidoreductase | Nitrites | Fluorescence | Chemoautotrophy | Energy sources | Genomes | Carbon | Substrates | Carbon cycle | Microorganisms | Fixation | Chemoautotrophic bacteria | Fluorescence in situ hybridization | Oxidation | Inorganic carbon | Carbon fixation | Dissolved inorganic carbon | Science & Technology - Other Topics
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13. Full Text Unveiling the RNA virosphere associated with marine microorganisms
by Urayama, Syun‐ichi and Takaki, Yoshihiro and Nishi, Shinro and Yoshida‐Takashima, Yukari and Deguchi, Shigeru and Takai, Ken and Nunoura, Takuro
Molecular Ecology Resources, ISSN 1755-098X, 11/2018, Volume 18, Issue 6, pp. 1444 - 1455
The study of extracellular DNA viral particles in the ocean is currently one of the most advanced fields of research in viral metagenomic analysis. However,... 
dsRNA | marine microorganisms | RNA virus | metagenomics | VISUALIZATION | PLANT | DOUBLE-STRANDED-RNA | READ ALIGNMENT | VIRUS | SEQUENCE DATA | BIOCHEMISTRY & MOLECULAR BIOLOGY | PHYLOGENETIC ANALYSES | COMMUNITIES | FEATURES | EVOLUTIONARY BIOLOGY | ECOLOGY | PICOBIRNAVIRUS | Genetic Variation | Cell Fractionation | RNA Viruses - isolation & purification | RNA, Viral - genetics | Seawater - virology | Japan | RNA Viruses - classification | RNA Viruses - genetics | RNA, Viral - analysis | Aquatic Organisms - virology | Microorganisms | RNA | Analysis | Genomics | Sea-water | RNA viruses | Chemical analysis | Double-stranded RNA | Particulates | Viruses | Genomes | Genetic diversity | Ribonucleic acid--RNA | Cell surface | Gene sequencing | Marine microorganisms | Water analysis | Intracellular | Deoxyribonucleic acid--DNA | Seawater
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