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1. Full Text Effects of zinc supplementation and zinc chelation on in vitro β-cell function in INS-1E cells
by Nygaard, Sanne Bjørn and Larsen, Agnete and Knuhtsen, Astrid and Rungby, Jørgen and Smidt, Kamille
BMC Research Notes, ISSN 1756-0500, 02/2014, Volume 7, Issue 1, pp. 84 - 84
Zinc is essential for the activities of pancreatic β-cells, especially insulin storage and secretion. Insulin secretion leads to co-release of zinc which... 
TPEN | INS-1E cells | Chelation | β -cell | Diabetes | Insulin | Metallothionein | Zinc | Zinc transporter | Islets of Langerhans - drug effects | Transcription, Genetic - drug effects | Cation Transport Proteins - biosynthesis | Zinc Transporter 8 | Apoptosis - drug effects | Metallothionein - biosynthesis | DNA, Complementary - genetics | Gene Expression Profiling | Necrosis | Dose-Response Relationship, Drug | RNA, Messenger - biosynthesis | Islets of Langerhans - metabolism | Islets of Langerhans - cytology | Cation Transport Proteins - genetics | Insulin Secretion | Real-Time Polymerase Chain Reaction | Cell Line | RNA, Messenger - genetics | Rats | Chelating Agents - pharmacology | Cell Division - drug effects | Ethylenediamines - pharmacology | Gene Expression Regulation - drug effects | Insulin - metabolism | Animals | Metallothionein - genetics | Zinc - pharmacology | In Vitro Techniques
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2. Full Text The genome of the fire ant Solenopsis invicta
by Yannick Wurm and John Wang and Oksana Riba-Grognuz and Miguel Corona and Sanne Nygaard and Brendan G. Hunt and Krista K. Ingram and Laurent Falquet and Mingkwan Nipitwattanaphon and Dietrich Gotzek and Michiel B. Dijkstra and Jan Oettler and Fabien Comtesse and Cheng-Jen Shih and Wen-Jer Wu and Chin-Cheng Yang and Jerome Thomas and Emmanuel Beaudoing and Sylvain Pradervand and Volker Flegel and Erin D. Cook and Roberto Fabbretti and Heinz Stockinger and Li Long and William G. Farmerie and Jane Oakey and Jacobus J. Boomsma and Pekka Pamilo and Soojin V. Yi and Jürgen Heinze and Michael A. D. Goodisman and Laurent Farinelli and Keith Harshman and Nicolas Hulo and Lorenzo Cerutti and Ioannis Xenarios and Laurent Keller and Gene E. Robinson
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2011, Volume 108, Issue 14, pp. 5679 - 5684
Ants have evolved very complex societies and are key ecosystem members. Some ants, such as the fire ant Solenopsis invicta, are also major pests. Here, we... 
Social insects | Ants | Insect pests | Fire ants | Worker insects | Genomes | Insect genomes | Queen insects | Insect genetics | Insect castes | Nonmodel organism | De novo genome assembly | Social insect | Caste differences | caste differences | HYMENOPTERA | social insect | APIS-MELLIFERA | DNA METHYLATION | de novo genome assembly | MULTIDISCIPLINARY SCIENCES | HONEY-BEE | DIFFERENTIAL GENE-EXPRESSION | WASP NASONIA | CHEMORECEPTOR SUPERFAMILY | POPULATION-GENETICS | nonmodel organism | SEX DETERMINATION | JUVENILE-HORMONE | Hierarchy, Social | Ants - genetics | Computational Biology | Genome, Insect - genetics | Molecular Sequence Data | Vitellogenins - genetics | Male | Phylogeny | Sequence Analysis, DNA | DNA Methylation | Animals | Base Sequence | Receptors, Odorant - genetics | Genomics - methods | Evolution, Molecular | Expressed Sequence Tags | Genetic aspects | Behavior | Research | Genomics | Biological Sciences
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3. Full Text Complementary symbiont contributions to plant decomposition in a fungus-farming termite
by Michael Poulsen and Haofu Hu and Cai Li and Zhensheng Chen and Luohao Xu and Saria Otani and Sanne Nygaard and Tania Nobre and Sylvia Klaubauf and Philipp M. Schindler and Frank Hauser and Hailin Pan and Zhikai Yang and Anton S. M. Sonnenberg and Z. Wilhelm de Beer and Yong Zhang and Michael J. Wingfield and Cornelis J. P. Grimmelikhuijzen and Ronald P. de Vries and Judith Korb and Duur K. Aanen and Jun Wang and Jacobus J. Boomsma and Guojie Zhang
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2014, Volume 111, Issue 40, pp. 14500 - 14505
Termites normally rely on gut symbionts to decompose organic matter but the Macrotermitinae domesticated Termitomyces fungi to produce their own food. This... 
Fungi | Datasets | Symbionts | Enzymes | Metagenomics | Microbiota | Soldiers | Termites | Genomes | Queen insects | carbohydrate-active enzymes | eusocial | symbioses | lignin | cellulose | BACTERIAL COMMUNITY | MARKOV-MODELS | GROWING TERMITES | MULTIDISCIPLINARY SCIENCES | GUT MICROBIOTA | TERMITOMYCES | EVOLUTION | GENOMES | LIGNOCELLULOSE | TOOL | MACROTERMITINAE | Male | Metagenome - genetics | Bacteria - classification | Female | Termitomyces - metabolism | Microbial Consortia - genetics | Termitomyces - physiology | Isoptera - genetics | Symbiosis | Isoptera - microbiology | Bacteria - metabolism | Microbial Consortia - physiology | Digestive System - metabolism | Carbohydrate Metabolism | Oligosaccharides - metabolism | Bacteria - genetics | Sequence Analysis, DNA | Polysaccharides - metabolism | Host-Pathogen Interactions | Plants - metabolism | Animals | Glycoside Hydrolases - metabolism | Isoptera - metabolism | Termitomyces - genetics | Digestive System - microbiology | Fungal Proteins - metabolism | Biodegradation | Environmental aspects | Research | Ecological research | Insect-plant relationships | Biological Sciences | genomes | macrotermitinae | bacterial community | evolution | termitomyces | growing termites | gut microbiota | markov-models | tool | lignocellulose
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4. Full Text Reciprocal genomic evolution in the ant-fungus agricultural symbiosis
by Nygaard, Sanne and Hu, Haofu and Li, Cai and Schiøtt, Morten and Chen, Zhensheng and Yang, Zhikai and Xie, Qiaolin and Ma, Chunyu and Deng, Yuan and Dikow, Rebecca B and Rabeling, Christian and Nash, David R and Wcislo, William T and Brady, Sean G and Schultz, Ted R and Zhang, Guojie and Boomsma, Jacobus J
Nature Communications, ISSN 2041-1723, 07/2016, Volume 7, Issue 1, p. 12233
The attine ant-fungus agricultural symbiosis evolved over tens of millions of years, producing complex societies with industrial-scale farming analogous to... 
HYMENOPTERA | CELL-WALL | ALIGNMENT | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | LEAF-CUTTING ANTS | DEGRADATION | GROWING ANTS | FORMICIDAE | ADAPTATIONS | TOOL | Ants - genetics | Carbohydrate Metabolism - genetics | Domestication | Calibration | Genome, Plant | Phylogeny | Fungi - genetics | Sequence Analysis, DNA | Symbiosis - genetics | Animals | Time Factors | Chitin - metabolism | Agriculture | Crops, Agricultural - genetics | Genome, Insect | Genome | Evolution, Molecular
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5. Full Text Laccase detoxification mediates the nutritional alliance between leaf-cutting ants and fungus-garden symbionts
by Henrik H. De Fine Licht and Morten Schiøtt and Adelina Rogowska-Wrzesinska and Sanne Nygaard and Peter Roepstorff and Jacobus J. Boomsma and Lund University and MEMEG and Lunds universitet
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 1/2013, Volume 110, Issue 2, pp. 583 - 587
Leaf-cutting ants combine large-scale herbivory with fungus farming to sustain advanced societies. Their stratified colonies are major evolutionary... 
Fungi | Enzymes | Ants | Leaf cutting ants | Genes | Insect colonies | Herbivores | Plants | Phytophagous insects | Insect genetics | Polyphenols | Gene cooption | gene cooption | TRANSITION | HERBIVORY | polyphenols | EVOLUTION | MULTIDISCIPLINARY SCIENCES | ECOLOGY | RESOURCE AVAILABILITY | Symbiosis | Amino Acid Sequence | Species Specificity | Molecular Sequence Data | Phylogeny | Ants - microbiology | Sequence Analysis, DNA | Laccase - genetics | Laccase - metabolism | Polyphenols - metabolism | Tandem Mass Spectrometry | Likelihood Functions | Animals | Hyphae - metabolism | Base Sequence | Plants - chemistry | Agaricales - enzymology | Physiological aspects | Research | Natural history | Biological Sciences | Biologi | Naturvetenskap | Natural Sciences
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6. Full Text The fungal symbiont of Acromyrmex leaf-cutting ants expresses the full spectrum of genes to degrade cellulose and other plant cell wall polysaccharides
by Grell, Morten N and Linde, Tore and Nygaard, Sanne and Nielsen, Kåre L and Boomsma, Jacobus J and Lange, Lene
BMC Genomics, ISSN 1471-2164, 12/2013, Volume 14, Issue 1, pp. 928 - 928
Background: The fungus gardens of leaf-cutting ants are natural biomass conversion systems that turn fresh plant forage into fungal biomass to feed the farming... 
Attine ants | Symbiosis | Fungus garden | Transcript profiling | DeepSAGE | Biomass conversion | Carbohydrate-active enzymes (CAZymes) | Acromyrmex echinatior | Leucocoprinus gongylophorus | RECOGNITION | SENSITIVITY | GROWING ANTS | LEUCOAGARICUS-GONGYLOPHORUS | ORIGIN | GENOME SEQUENCE | CARBOHYDRATE-BINDING MODULES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ENZYMES | GARDENS | EXPERIMENTAL PROTOCOL | GENETICS & HEREDITY | Gene Expression Regulation, Fungal | Gene Library | Biomass | Cell Wall - chemistry | Ants - microbiology | Polysaccharides - metabolism | Animals | Cellulases - metabolism | Agaricales - genetics | Genes, Fungal | Agaricales - enzymology | Cellulose - metabolism | Expressed Sequence Tags | Mycoses | Care and treatment | Plant cells and tissues | Analysis | Risk factors | Amylases | Pectin | Biotechnology | Enzymes | Carbohydrates | Microbiology | Genomics | Colleges & universities | Cellulose | Decomposition | Pattern recognition | Gene expression | Variance analysis | Environmental engineering | Fungi | Confidence intervals | Cellulase
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7. Full Text Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
by Li, Qiye and Wang, Zongji and Lian, Jinmin and Schiøtt, Morten and Jin, Lijun and Zhang, Pei and Zhang, Yanyan and Nygaard, Sanne and Peng, Zhiyu and Zhou, Yang and Deng, Yuan and Zhang, Wenwei and Boomsma, Jacobus J and Zhang, Guojie
Nature Communications, ISSN 2041-1723, 2014, Volume 5, Issue 1, p. 4943
Eusocial insects have evolved the capacity to generate adults with distinct morphological, reproductive and behavioural phenotypes from the same genome. Recent... 
CIRCADIAN CLOCK | SEQ DATA | EVOLUTION | TRANSCRIPTOME | CAMPONOTUS-FLORIDANUS | BEHAVIOR | MULTIDISCIPLINARY SCIENCES | HARPEGNATHOS-SALTATOR | GENOME-WIDE ANALYSIS | GENE-EXPRESSION | DROSOPHILA | Ants - metabolism | Animals | Ants - genetics | Species Specificity | RNA Editing | Base Sequence | Molecular Sequence Data | Ants - classification | Male | Phylogeny | RNA - genetics | RNA - metabolism
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8. Full Text Old soldiers never die
by Boomsma, Jacobus J and Nygaard, Sanne
Genome Biology, ISSN 1474-7596, 02/2012, Volume 13, Issue 2, pp. 144 - 144
An ancestral supersoldier phenotype of Pheidole ants can be recovered when selection for supersoldiers re-emerges, indicating that the developmental potential... 
Research Highlight
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9. Full Text Surveillance of vancomycin-resistant enterococci reveals shift in dominating clones and national spread of a vancomycin-variable vanA Enterococcus faecium ST1421-CT1134 clone, Denmark, 2015 to March 2019
by Hammerum, AM and Justesen, US and Pinholt, M and Roer, L and Kaya, H and Worning, P and Nygaard, S and Kemp, M and Clausen, ME and Nielsen, KL and Samulioniene, J and Kjaersgaard, M and Ostergaard, C and Coia, J and Sondergaard, TS and Gaini, S and Schonning, K and Westh, H and Hasman, H and Holzknecht, BJ
EUROSURVEILLANCE, ISSN 1560-7917, 08/2019, Volume 24, Issue 34, pp. 2 - 6
We describe clonal shifts in vanA Enterococcus faecium isolates from clinical samples obtained from patients in Denmark from 2015 to the first quarter (Q1) of... 
OUTBREAK | INFECTIOUS DISEASES | VVE | MLST | Rapid Communication | Enterococci | VRE | vanB | vanA
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10. Ant genomics (Hymenoptera: Formicidae): Challenges to overcome and opportunities to seize
by Nygaard, Sanne and Wurm, Yannick
Myrmecological News, ISSN 1994-4136, 09/2015, Volume 21, pp. 59 - 72
Myrmecologists have long studied the systematics, behavior, ecology, and evolution of ants. This first involved fundamental approaches including morphological... 
Formicidae | Genomes | Review | Bioinformatics | Annotation | Assembly | DNA sequencing | annotation | SOLENOPSIS-INVICTA | HARPEGNATHOS-SALTATOR | EVOLUTIONARY INSIGHTS | DIFFERENTIAL GENE-EXPRESSION | SOFTWARE-DEVELOPMENT | ENTOMOLOGY | POSITIVE SELECTION | CAMPONOTUS-FLORIDANUS | review | bioinformatics | assembly | SOCIAL-ORGANIZATION | NEXT-GENERATION | FIRE ANT
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11. Full Text Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants
by Lindow, Morten and Jacobsen, Anders and Nygaard, Sanne and Mang, Yuan and Krogh, Anders
PLoS Computational Biology, ISSN 1553-734X, 11/2007, Volume 3, Issue 11, pp. 2379 - 2390
microRNAs ( miRNAs) are important post-transcriptional regulators, but the extent of this regulation is uncertain, both with regard to the number of miRNA... 
ARABIDOPSIS-THALIANA | SMALL RNAS | EVOLUTION | SEQUENCES | NONCODING RNAS | GENES | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | TARGETS | HUMAN MICRORNAS | IDENTIFICATION | PREDICTION | Sequence Analysis, RNA - methods | Plant Proteins - genetics | Phenotype | Genome, Plant - genetics | Plants - genetics | Species Specificity | Chromosome Mapping - methods | Gene Expression Regulation, Plant - genetics | MicroRNAs - genetics | Sequence Homology, Nucleic Acid | Plant Biology | Oryza | Populus | Arabidopsis | Computational Biology | Proteins | Genetics | RNA | Gene expression | Ribonucleic acid | Genomics
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12. Full Text Exogenous Metallothionein Potentiates the Insulin Response at Normal Glucose Concentrations in INS‐1E Beta‐Cells without Disturbing Intracellular ZnT8 Expression
by Nygaard, Sanne B and Lund, Ninna S and Larsen, Agnete and Pedersen, Nanna and Rungby, Jørgen and Smidt, Kamille
Basic & Clinical Pharmacology & Toxicology, ISSN 1742-7835, 02/2015, Volume 116, Issue 2, pp. 173 - 177
DIABETES-MELLITUS | METABOLISM | TRANSCRIPTION | GENE-EXPRESSION | PHARMACOLOGY & PHARMACY | DEATH | TOXICOLOGY | ZINC | Cell Line | Metallothionein - metabolism | Gene Expression | Insulin - metabolism | Insulin-Secreting Cells - metabolism | Animals | Zinc Transporter 8 | Zinc - metabolism | Glucose - metabolism | Rats | Cation Transport Proteins - genetics | Metallothionein - administration & dosage | Glucose metabolism | Pancreatic beta cells | Glucose | Insulin | Metallothionein | Dextrose | Index Medicus
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13. Full Text The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
by Nygaard, Sanne and Zhang, Guojie and Schiøtt, Morten and Li, Cai and Wurm, Yannick and Hu, Haofu and Zhou, Jiajian and Ji, Lu and Qiu, Feng and Rasmussen, Morten and Pan, Hailin and Hauser, Frank and Krogh, Anders and Grimmelikhuijzen, Cornelis J. P and Wang, Jun and Boomsma, Jacobus J
Genome Research, ISSN 1088-9051, 08/2011, Volume 21, Issue 8, pp. 1339 - 1348
We present a high-quality (>100x depth) Illumina genome sequence of the leaf-cutting ant Acromyrmex echinatior, a model species for symbiosis and reproductive... 
DROSOPHILA-MELANOGASTER | NRD CONVERTASE | AGRICULTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MULTIPLE SEQUENCE ALIGNMENT | GENETIC DIVERSITY | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | METALLOENDOPEPTIDASE | WORKER CASTE | NEUROHORMONE GPCRS | PARASITE | Adaptation, Physiological | Symbiosis | Sexual Behavior, Animal | Ants - genetics | Insect Proteins - genetics | Molecular Sequence Data | Male | Phylogeny | Fungi - genetics | Animals | Genes, Fungal | Genome | Insect Proteins - metabolism | Physiological aspects | Evolutionary genetics | Genetic aspects | Ants | Research
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14. Full Text The genomic impact of 100 million years of social evolution in seven ant species
by Gadau, Jürgen and Helmkampf, Martin and Nygaard, Sanne and Roux, Julien and Simola, Daniel F and Smith, Chris R and Suen, Garret and Wurm, Yannick and Smith, Christopher D
Trends in Genetics, ISSN 0168-9525, 2011, Volume 28, Issue 1, pp. 14 - 21
Ants (Hymenoptera, Formicidae) represent one of the most successful eusocial taxa in terms of both their geographic distribution and species number. The... 
Medical Education | WIDESPREAD | ORGANIZATION | IMPORTED FIRE ANT | HYMENOPTERA | DNA METHYLATION | SOLENOPSIS-INVICTA | TROPHIC ECOLOGY | DRAFT GENOME | GENETICS & HEREDITY | DIVISION-OF-LABOR | HONEY-BEE | Animals | Ants - genetics | Time Factors | Social Behavior | Ants - physiology | Humans | Ants - classification | Genome, Insect | Phylogeny | Evolution, Molecular | Honeybee | Ants | Developmental biology | Analysis | Genomics | Genetic research | Evolution | Universities and colleges | Social aspects
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15. Full Text Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
by Simola, Daniel F and Wissler, Lothar and Donahue, Greg and Waterhouse, Robert M and Helmkampf, Martin and Roux, Julien and Nygaard, Sanne and Glastad, Karl M and Hagen, Darren E and Viljakainen, Lumi and Reese, Justin T and Hunt, Brendan G and Graur, Dan and Elhaik, Eran and Kriventseva, Evgenia V and Wen, Jiayu and Parker, Brian J and Cash, Elizabeth and Privman, Eyal and Childers, Christopher P and Munoz-Torres, Monica C and Boomsma, Jacobus J and Bornberg-Bauer, Erich and Currie, Cameron R and Elsik, Christine G and Suen, Garret and Goodisman, Michael A.D and Keller, Laurent and Liebig, Jürgen and Rawls, Alan and Reinberg, Danny and Smith, Chris D and Smith, Chris R and Tsutsui, Neil and Wurm, Yannick and Zdobnov, Evgeny M and Berger, Shelley L and Gadau, Jürgen
Genome Research, ISSN 1088-9051, 08/2013, Volume 23, Issue 8, pp. 1235 - 1247
Genomes of eusocial insects code for dramatic examples of phenotypic plasticity and social organization. We compared the genomes of seven ants, the honeybee,... 
WIDESPREAD | ANTS CAMPONOTUS-FLORIDANUS | DRAFT GENOME | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | ORIGIN | ALIGNMENT | MEMORY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FAMILIES | GENETICS & HEREDITY | EXPRESSION | VERTEBRATE | Ants - genetics | Species Specificity | Regulatory Sequences, Nucleic Acid | Gene Expression Regulation | Synteny | Insect Proteins - genetics | Phylogeny | Transcription Factors - genetics | Sequence Analysis, DNA | Behavior, Animal | DNA Methylation | Animals | Social Behavior | Conserved Sequence | MicroRNAs - genetics | Models, Genetic | Genome, Insect | Hymenoptera - genetics | Binding Sites | Evolution, Molecular | Genetic aspects | Research | Insects | Genomics | Natural history
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