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Journal Article
by Stacey, S.N and Sulem, P and Jonasdottir, A and Masson, G and Gudmundsson, J and Gudbjartsson, D.F and Magnusson, O.T and Gudjonsson, S.A and Sigurgeirsson, B and Thorisdottir, K and Ragnarsson, R and Benediktsdottir, K.R and Nexo, B.A and Tjonneland, A and Overvad, K and Rudnai, P and Gurzau, E and Koppova, K and Hemminki, K and Corredera, C and Fuentelsaz, V and Grasa, P and Navarrete, S and Fuertes, F and Garcia-Prats, M.D and Sanambrosio, E and Panadero, A and Juan, A. de and Garcia, A and Rivera, F and Planelles, D and Soriano, V and Requena, C and Aben, K.K.H and Rossum, M.M. van and Cremers, R.G.H.M and Oort, I.M. van and Spronsen, D.J. van and Schalken, J.A and Peters, W.H.M and Helfand, B.T and Donovan, J.L and Hamdy, F.C and Badescu, D and Coeanu, O and Jinga, M and Csiki, I.E and Constantinescu, V and Badea, P and Mates, I.N and Dinu, D.E and Constantin, A and Mates, D and Kristjansdottir, S and Agnarsson, B.A and Jonsson, E and Barkardottir, R.B and Einarsson, G.V and Sigurdsson, F and Moller, P.H and Stefansson, T and Valdimarsson, T and Johannsson, O.T and Sigurdsson, H and Jonsson, T and Jonasson, J.G and Tryggvadottir, L and Rice, T and Hansen, H.M and Xiao, Y and Lachance, D.H and Kosel, M.L and Decker, P.A and Thorleifsson, G and Johannsdottir, H and Helgadottir, H.T and Sigurdsson, A and Steinthorsdottir, V and Lindblom, A and Sandler, R.S and Keku, T.O and Banasik, K and Jorgensen, T and Witte, D.R and Hansen, T and Pedersen, O and Jinga, V and Neal, D.E and Catalona, W.J and Wrensch, M and Wiencke, J and Jenkins, R.B and Nagore, E and Vogel, U and Kiemeney, L.A.L.M and Kumar, R and Mayordomo, J.I and Olafsson, J.H and et al and Swedish Low-Risk Colorectal Canc and Swedish Low-risk Colorectal Cancer Study Group and Medicinska och farmaceutiska vetenskapsområdet and Uppsala universitet and Medicinska och farmaceutiska vetenskapsområdet, centrumbildningar mm and Centrum för klinisk forskning, Västerås
Nature Genetics, ISSN 1061-4036, 2011, Volume 43, Issue 11, pp. 1098 - 1103
Journal Article
by Thorsson, Vesteinn and Thorsson, Vésteinn and Gibbs, Richard A and Gibbs, David L and Brown, Scott D and Wolf, Gregory and Wolf, Denise and Bortone, Dante S and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F and Gao, Jianjiong and Plaisier, Christopher L and Eddy, James A and Ziv, Elad and Culhane, Aedin C and Paull, Evan O and Sivakumar, I.K. Ashok and Gentles, Andrew J and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S and Mose, Lisle E and Vo, Nam Sy and Liu, Wenbin and Liu, Jianfang and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila and Reynolds, Sheila M and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M and Rao, Arvind and Chen, Amy and Chen, Chu and Chen, Ken and Krasnitz, Alexander and Hu, Jianhong and Hu, Hai and Malta, Tathiane M and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K and Weinstein, John N and Guinney, Justin and Saltz, Joel and Holt, Robert and Holt, Robert A and Rabkin, Charles S and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jioajiao and Wang, Min and Wang, Linghua and Wang, Zhining and Wang, Timothy and Wang, Jing and Yang, Ju Dong and Yang, Hannah and Yang, Liming and Yang, Ian and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Zhang, Jiexin and Zhang, Lizhi and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Immunity, ISSN 1074-7613, 04/2018, Volume 48, Issue 4, pp. 812 - 830.e14
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across... 
tumor immunology | immunotherapy | cancer genomics | integrative network analysis | immuno-oncology | tumor microenvironment | immune subtypes | immunomodulatory | GENOMIC ANALYSES | INFORMATION | T-CELL-RECEPTOR | REGULATORY NETWORK | CLASSIFICATION | IMMUNOLOGY | SEQUENCING DATA | SOMATIC MUTATIONS | COMPREHENSIVE ANALYSIS | PREDICTION | REVEALS | Transforming Growth Factor beta - immunology | Prognosis | Humans | Middle Aged | Th1-Th2 Balance - physiology | Male | Neoplasms - classification | Wound Healing - immunology | Young Adult | Transforming Growth Factor beta - genetics | Neoplasms - genetics | Neoplasms - immunology | Interferon-gamma - immunology | Adolescent | Aged, 80 and over | Adult | Female | Aged | Interferon-gamma - genetics | Wound Healing - genetics | Genomics - methods | Child | Macrophages - immunology | Cell proliferation | Cluster analysis | Transcription | Copy number | p53 Protein | Lung cancer | Genomics | Aneuploidy | Lymphocytes T | Genomes | Cell interactions | Macrophages | Immunotherapy | DNA methylation | Deoxyribonucleic acid--DNA | Immune system | Medical research | Wound healing | Immunomodulation | MiRNA | Stockholders | Inflammation | T cell receptors | Communications networks | Gene expression | White blood cells | Inventors | Medical prognosis | γ-Interferon | Mutation | Cancer | Tumors | Index Medicus | Immune Subtypes | Integrative Network Analysis | Cancer Genomics | Immuno-oncology | Tumor immunology
Journal Article
by Bailey, Matthew and Bailey, Matthew H and Tokheim, Collin and Porta-Pardo, Eduard and Sengupta, Sohini and Bertrand, Denis and Weerasinghe, Amila and Colaprico, Antonio and Wendl, Michael C and Kim, Jaegil and Reardon, Brendan and Ng, Kwok-Shing and Ng, Patrick Kwok-Shing and Jeong, Kang Jin and Cao, Song and Wang, Jioajiao and Wang, Timothy and Wang, Zhining and Wang, Zixing and Wang, Fang and Wang, Linghua and Wang, Jing and Wang, Min and Gao, Qingsong and Gao, Jianjiong and Gao, Galen F and Liu, Xiuping and Liu, Jia and Liu, Wenbin and Liu, Yuexin and Liu, Eric Minwei and Mularoni, Loris and Rubio-Perez, Carlota and Nagarajan, Niranjan and Cortés-Ciriano, Isidro and Zhou, Wanding and Zhou, Daniel Cui and Liang, Wen-Wei and Liang, Han and Hess, Julian M and Hess, Julian and Yellapantula, Venkata D and Tamborero, David and Gonzalez-Perez, Abel and Suphavilai, Chayaporn and Ko, Jia Yu and Khurana, Ekta and Park, Joong-Won and Park, Peter J and Van Allen, Eliezer M and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Ju Dong and Yang, Hannah and Yang, Ian and Yang, Liming and Zenklusen, Jean C and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Zhang, Jiexin and Zhang, Jiashan (Julia) and Zhang, Lizhi and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Sun, Yichao and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Miller, Christopher A and Miller, Judy and Reynolds, Sheila and ... and Canc Genome Atlas Res Network and MC3 Working Grp and MC3 Working Group and Cancer Genome Atlas Research Network
Cell, ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 371 - 385.e18
Journal Article
Cancer Research, ISSN 0008-5472, 04/2011, Volume 71, Issue 8 Supplement, pp. 1926 - 1926
Journal Article
by Ceccarelli, Michele and Barthel, Floris P and Malta, Tathiane M and Sabedot, Thais S and Salama, Sofie R and Murray, Bradley A and Morozova, Olena and Newton, Yulia and Radenbaugh, Amie and Pagnotta, Stefano M and Anjum, Samreen and Wang, Jiguang and Wang, Zhining and Manyam, Ganiraju and Zoppoli, Pietro and Ling, Shiyun and Rao, Arvind and Rao, Arjun A and Rao, Ganesh and Grifford, Mia and Cherniack, Andrew D and Zhang, Wei and Zhang, Jiashan and Zhang, Jianhua and Zhang, Hailei and Poisson, Laila and Carlotti, Carlos Gilberto and Tirapelli, Daniela Pretti da Cunha and Mikkelsen, Tom and Lau, Ching C and Yung, W.K. Alfred and Rabadan, Raul and Huse, Jason and Brat, Daniel J and Lehman, Norman L and Barnholtz-Sloan, Jill S and Zheng, Siyuan and Hess, Kenneth and Meyerson, Matthew and Beroukhim, Rameen and Cooper, Lee and Akbani, Rehan and Wrensch, Margaret and Haussler, David and Aldape, Kenneth D and Laird, Peter W and Gutmann, David H and Arachchi, Harindra and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Barnett, Gene and Baylin, Stephen and Bell, Sue and Benz, Christopher and Bir, Natalie and Black, Keith L and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bristow, Christopher A and Butterfield, Yaron S.N and Chen, Qing-Rong and Chin, Lynda and Cho, Juok and Chuah, Eric and Chudamani, Sudha and Coetzee, Simon G and Cohen, Mark L and Colman, Howard and Couce, Marta and D’Angelo, Fulvio and Davidsen, Tanja and Davis, Amy and Demchok, John A and Devine, Karen and Ding, Li and Duell, Rebecca and Elder, J. Bradley and Eschbacher, Jennifer M and Fehrenbach, Ashley and Ferguson, Martin and Frazer, Scott and Fuller, Gregory and Fulop, Jordonna and Gabriel, Stacey B and Garofano, Luciano and Gastier-Foster, Julie M and Gehlenborg, Nils and Gerken, Mark and Getz, Gad and Giannini, Caterina and Gibson, William J and Hadjipanayis, Angela and Hayes, D. Neil and Heiman, David I and Hermes, Beth and Hilty, Joe and Hoadley, Katherine A and ... and TCGA Res Network and TCGA Research Network
Cell, ISSN 0092-8674, 01/2016, Volume 164, Issue 3, pp. 550 - 563
Journal Article