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Genome Biology, ISSN 1474-7596, 09/2017, Volume 18, Issue 1, pp. 174 - 174
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 06/2018, Volume 14, Issue 6, pp. e1006245 - e1006245
Journal Article
Genome Biology, ISSN 1474-7596, 03/2010, Volume 11, Issue 3, pp. R25 - R25
The fine detail provided by sequencing-based transcriptome surveys suggests that RNA-seq is likely to become the platform of choice for interrogating steady... 
TRANSCRIPTOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIAS | BIOLOGY | GENETICS & HEREDITY | SAGE | MODEL | HOUSEKEEPING GENES | MICROARRAY DATA | BIOCONDUCTOR | Gene Expression Profiling - methods | Base Sequence - genetics | Models, Statistical | Gene Library | Computer Simulation | RNA - genetics | Index Medicus | Method
Journal Article
Biology Direct, ISSN 1745-6150, 04/2009, Volume 4, Issue 1, pp. 14 - 14
Background: Several recent studies have demonstrated the effectiveness of deep sequencing for transcriptome analysis (RNA-seq) in mammals. As RNA-seq becomes... 
LARGE GENE LISTS | ARRAYS | BIOLOGY | Oligonucleotide Array Sequence Analysis | Base Sequence | Bias | Humans | RNA, Messenger - genetics | RNA, Messenger - chemistry | Gene Expression Profiling | Transcription, Genetic - genetics | Systems Biology | Usage | DNA microarrays | Research | Human genome | Gene expression | Systems biology | Index Medicus
Journal Article
GENOME BIOLOGY, ISSN 1474-760X, 04/2019, Volume 20, Issue 1, pp. 78 - 78
The vast quantities of short-read sequencing data being generated are often exchanged and stored as aligned reads. However, aligned data becomes outdated as... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Datasets | Next-generation sequencing | Efficiency | Quality control | Genomes | Bioinformatics | Methods
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2015, Volume 32, Issue 2, pp. 286 - 288
A Summary: DNA methylation is one of the most commonly studied epigenetic modifications due to its role in both disease and development. The Illumina... 
METHYLATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CANCER | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Computational Biology - methods | DNA Methylation | Oligonucleotide Array Sequence Analysis - methods | Humans | CpG Islands | Software | Genome, Human | Index Medicus
Journal Article
Genome biology, ISSN 1474-7596, 2014, Volume 15, Issue 7, pp. 410 - 410
Next generation sequencing has made it possible to perform differential gene expression studies in non-model organisms. For these studies, the need for a... 
REFERENCE GENOME | GENERATION SEQUENCING DATA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ANNOTATION | GENETICS & HEREDITY | OPTIMIZATION | BLAST | RNA-SEQ DATA | READS | DISCOVERY | SOFTWARE | TOOLS | Yeasts - genetics | Animals | Sequence Analysis, RNA | Humans | Transcriptome | Software | Models, Statistical | Chick Embryo | Cluster Analysis | Index Medicus | Method
Journal Article
F1000Research, ISSN 2046-1402, 2017, Volume 6, pp. 595 - 595
Background: Single cell RNA sequencing (scRNA-seq) has rapidly gained popularity for profiling transcriptomes of hundreds to thousands of single cells. This... 
Bioinformatics | Genomics | Methods for Diagnostic & Therapeutic Studies | Gene length bias | Differential expression | Unique molecular identifiers | Gene detection rate | Single cell RNA sequencing
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 12/2010, Volume 38, Issue 22, pp. e204 - e204
Journal Article
Genome Biology, ISSN 1474-7596, 02/2010, Volume 11, Issue 2, pp. R14 - R14
We present GOseq, an application for performing Gene Ontology (GO) analysis on RNA-seq data. GO analysis is widely used to reduce complexity and highlight... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PROSTATE-CANCER | BIOLOGY | GENETICS & HEREDITY | ENRICHMENT ANALYSIS | GENOME | BRAIN | TOOL | Sequence Analysis, RNA - methods | Genome-Wide Association Study | Prostatic Neoplasms - genetics | Androgens - pharmacology | Bias | Humans | Gene Expression Regulation, Neoplastic | Cell Line, Tumor | Male | Index Medicus | Method
Journal Article
F1000Research, ISSN 2046-1402, 2019, Volume 8, pp. 265 - 265
RNA sequencing has enabled high-throughput and fine-grained quantitative analyses of the transcriptome. While differential gene expression is the most widely... 
Transcription | Isoforms | Genomes | Ribonucleic acid--RNA | Gene expression | Methods | Generalized linear models
Journal Article
Genome Biology, ISSN 1474-7596, 08/2017, Volume 18, Issue 1, pp. 148 - 148
Numerous methods have been developed to analyse RNA sequencing (RNA-seq) data, but most rely on the availability of a reference genome, making them unsuitable... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | QUANTIFICATION | RNA-SEQ DATA | GENOME | GENETICS & HEREDITY | TOOL | Algorithms | Genomics | Data processing | Genomes | Gene expression | Ribonucleic acid--RNA | Bioinformatics
Journal Article
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2015, p. btv560
Journal Article
F1000Research, ISSN 2046-1402, 2016, Volume 5, p. 1281
Methylation in the human genome is known to be associated with development and disease. The Illumina Infinium methylation arrays are by far the most common way... 
Bioinformatics | Genomics
Journal Article