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1. Full Text RNA sequencing: advances, challenges and opportunities
by Milos, Patrice M and Ozsolak, Fatih
Nature reviews. Genetics, ISSN 1471-0056, 02/2011, Volume 12, Issue 2, pp. 87 - 98
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Animals | Sequence Analysis, RNA | Alternative Splicing | RNA - analysis | Humans | Transcription, Genetic | RNA - genetics | Physiological aspects | Usage | Nucleotide sequencing | Research | Genetic transcription | RNA | Index Medicus
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2. Attomole-level genomics with single-molecule direct DNA, cDNA and RNA sequencing technologies
by Ozsolak, Fatih
Current issues in molecular biology, ISSN 1467-3037, 07/2016, Volume 18, Issue 1, pp. 43 - 48
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Analysis, RNA - methods | High-Throughput Nucleotide Sequencing | Genome, Human | Sequence Analysis, DNA - methods | Genomics | Humans
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3. Full Text Third-generation sequencing techniques and applications to drug discovery
by Ozsolak, Fatih
Expert opinion on drug discovery, ISSN 1746-0441, 03/2012, Volume 7, Issue 3, pp. 231 - 243
genetics | third-generation sequencing | drug discovery | next-generation sequencing | epigenetics | pharmacogenetics | Epigenetics | Genetics | Third-generation sequencing | Pharmacogenetics | Next-generation sequencing | Drug discovery | Life Sciences & Biomedicine | Pharmacology & Pharmacy | Science & Technology | Sequence Analysis, RNA - methods | Pharmacogenetics - methods | Humans | Drug Design | Drug Discovery - methods | Genome, Human | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | High-Throughput Screening Assays - methods | Index Medicus | Third generation sequencing | Next generation sequencing
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4. Full Text The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
by Kapranov, Philipp and St Laurent, Georges and Raz, Tal and Ozsolak, Fatih and Reynolds, C Patrick and Sorensen, Poul H.B and Reaman, Gregory and Milos, Patrice and Arceci, Robert J and Thompson, John F and Triche, Timothy J
BMC biology, ISSN 1741-7007, 12/2010, Volume 8, Issue 1, pp. 149 - 149
Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Knowledge Bases | Molecular Sequence Annotation - standards | Sarcoma, Ewing - metabolism | Humans | Liver - metabolism | Sarcoma, Ewing - pathology | Molecular Sequence Annotation - trends | Bone Neoplasms - pathology | RNA, Ribosomal - genetics | Genome, Human - genetics | Bone Neoplasms - metabolism | RNA - genetics | Brain - metabolism | RNA, Nuclear - metabolism | Neoplasm Metastasis - genetics | Animals | Adolescent | K562 Cells | Bone Neoplasms - genetics | Genome, Insect | Sequence Analysis, RNA - standards | RNA, Nuclear - genetics | Sarcoma, Ewing - genetics | Drosophila - genetics | RNA sequencing | Methods | Medical research | Pediatrics | Health sciences | Dark matter | Oncology | Genomes | Life sciences | Manuscripts | Cancer | Tumors | Index Medicus
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5. Full Text High-throughput mapping of the chromatin structure of human promoters
by Ozsolak, Fatih and Liu, X Shirley and Fisher, David E and Song, Jun S
Nature biotechnology, ISSN 1087-0156, 02/2007, Volume 25, Issue 2, pp. 244 - 248
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biotechnology | Biological and medical sciences | Chromatin. Chromosome | Molecular and cellular biology | Molecular genetics | Algorithms | Oligonucleotide Array Sequence Analysis - methods | Base Sequence | Chromosome Mapping - methods | Humans | Molecular Sequence Data | Nucleosomes - genetics | Promoter Regions, Genetic - genetics | Sequence Analysis, DNA - methods | Genome, Human - genetics | Physiological aspects | Chromatin | Chromosome mapping | Research | Structure | Methods | Cellular biology | Gene expression | Research methodology | Index Medicus
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6. Full Text Chromatin structure analyses identify miRNA promoters
by Ozsolak, Fatih and Poling, Laura L and Wang, Zhengxin and Liu, Hui and Liu, X. Shirley and Roeder, Robert G and Zhang, Xinmin and Song, Jun S and Fisher, David E
Genes & development, ISSN 0890-9369, 11/2008, Volume 22, Issue 22, pp. 3172 - 3183
Promoter | Chromatin | MicroRNA | Transcription | Genetics & Heredity | Life Sciences & Biomedicine | Developmental Biology | Science & Technology | Cell Biology | RNA, Small Interfering - genetics | Luciferases - metabolism | Humans | Gene Expression Regulation, Neoplastic | Nucleosomes - genetics | Promoter Regions, Genetic - genetics | Recombinant Fusion Proteins - metabolism | Luciferases - genetics | Transfection | Chromatin Immunoprecipitation | RNA Interference | Cloning, Molecular | Cell Line, Tumor | Recombinant Fusion Proteins - genetics | Transcription, Genetic | MicroRNAs - genetics | HeLa Cells | Chromatin - genetics | Promoters (Genetics) | RNA | Analysis | Research | Genetic transcription | Structure | Index Medicus | microRNA | Research Paper | promoter | chromatin
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7. Full Text Direct RNA sequencing
by Reifenberger, Jeffrey G and Jarosz, Mirna and Bowers, Jayson and Platt, Adam R and Sass, Lauryn E and Thompson, John F and Jones, Dan R and Milos, Patrice M and McInerney, Peter and Ozsolak, Fatih
Nature (London), ISSN 0028-0836, 10/2009, Volume 461, Issue 7265, pp. 814 - 818
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Diverse techniques | Molecular and cellular biology | RNA, Fungal - analysis | RNA - analysis | Saccharomyces cerevisiae - genetics | DNA, Complementary - genetics | Templates, Genetic | Gene Expression Profiling - methods | RNA - genetics | Sequence Analysis, RNA - methods | RNA - isolation & purification | Polymerase Chain Reaction | RNA, Fungal - genetics | RNA, Fungal - isolation & purification | Oligoribonucleotides - genetics | Usage | DNA microarrays | Nucleotide sequencing | Research | Genetic transcription | Methods | Genetic engineering | Biomedical research | E coli | DNA polymerase | Reaction kinetics | Index Medicus
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8. Full Text Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast
by Geisberg, Joseph V and Moqtaderi, Zarmik and Fan, Xiaochun and Ozsolak, Fatih and Struhl, Kevin
Cell (Cambridge), ISSN 0092-8674, 02/2014, Volume 156, Issue 4, pp. 812 - 824
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Genome-Wide Association Study | Saccharomyces cerevisiae - genetics | RNA, Fungal - chemistry | Half-Life | RNA Stability | RNA, Messenger - metabolism | RNA, Fungal - metabolism | Saccharomyces cerevisiae - metabolism | Sequence Alignment | Genome, Fungal | Nucleotide Motifs | Base Sequence | RNA, Messenger - chemistry | Analysis | Messenger RNA | Protein binding | Index Medicus
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9. Full Text RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis
by Yu, Min and Ting, David T and Stott, Shannon L and Wittner, Ben S and Ozsolak, Fatih and Paul, Suchismita and Ciciliano, Jordan C and Smas, Malgorzata E and Winokur, Daniel and Gilman, Anna J and Ulman, Matthew J and Xega, Kristina and Contino, Gianmarco and Alagesan, Brinda and Brannigan, Brian W and Milos, Patrice M and Ryan, David P and Sequist, Lecia V and Bardeesy, Nabeel and Ramaswamy, Sridhar and Toner, Mehmet and Maheswaran, Shyamala and Haber, Daniel A
Nature (London), ISSN 0028-0836, 07/2012, Volume 487, Issue 7408, pp. 510 - 513
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Biological and medical sciences | Medical sciences | Animal tumors. Experimental tumors | Experimental digestive system and abdominal tumors | Tumors | Cell Survival | Humans | Pancreatic Neoplasms - pathology | Neoplastic Cells, Circulating - metabolism | RNA, Messenger - analysis | Pancreatic Neoplasms - genetics | Wnt Proteins - metabolism | Wnt2 Protein - genetics | Wnt2 Protein - metabolism | Neoplasm Metastasis - genetics | RNA, Messenger - biosynthesis | Contact Inhibition | Animals | Sequence Analysis, RNA | Wnt Proteins - genetics | Wnt Signaling Pathway - genetics | Mice | MAP Kinase Kinase Kinases - antagonists & inhibitors | Genes, Neoplasm - genetics | Gene Expression Regulation, Neoplastic - genetics | Disease Models, Animal | RNA sequencing | Pancreatic cancer | Physiological aspects | Development and progression | Genetic aspects | Research | Metastasis | Cancer | Proteins | Pancreas | Index Medicus
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