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1. Full Text Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
by Hassa, Julia and Maus, Irena and Off, Sandra and Pühler, Alfred and Scherer, Paul and Klocke, Michael and Schlüter, Andreas
Applied microbiology and biotechnology, ISSN 0175-7598, 6/2018, Volume 102, Issue 12, pp. 5045 - 5063
Biotechnology | Microbiology | Sewage digesters | Integrated omics | Metagenome-assembled genomes | Genome-enabled metatranscriptomics | Anaerobic digestion | Life Sciences | Taxonomic profiling | Biogas microbiome | Methanogenic Archaea | Microbial Genetics and Genomics | Methanogenesis | Biomass conversion | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genetic aspects | Microbial colonies | Genomics | Methods | Proteomics | Anaerobic microorganisms | Microbial activity | Ammonium | Hemicellulose | Municipal wastes | rRNA 16S | Transcription | Taxonomy | Cellulose | Genomes | Organic wastes | Methanogenic archaea | Biopolymers | Gene sequencing | Microorganisms | Community involvement | Sustainability | Genetic analysis | Nutrients | Plants (botany) | Animal wastes | Cultivation | Nucleotide sequence | Archaea | Plant communities | Biogas | Organic farming | Gene expression | Agricultural wastes | Fermentation | Metabolism | Sludge | Substrates | Ammonia | Renewable energy | Crop residues | Process parameters | Nutrient availability | Proteomes | Index Medicus | Mini-Review
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2. Full Text EDGAR: A software framework for the comparative analysis of prokaryotic genomes
by Blom, Jochen and Albaum, Stefan P and Doppmeier, Daniel and Pühler, Alfred and Vorhölter, Frank-Jörg and Zakrzewski, Martha and Goesmann, Alexander
BMC bioinformatics, ISSN 1471-2105, 05/2009, Volume 10, Issue 1, pp. 154 - 154
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | User-Computer Interface | Genome, Bacterial | Databases, Genetic | Models, Genetic | Software | Phylogeny | Genomics - methods | Sequence Analysis, DNA - methods | Cluster Analysis | Xanthomonas - genetics | Microbial genetics | Usage | Prokaryotes | Genetic aspects | Nucleotide sequencing | Research | Comparative analysis | Applications software | Methods | Index Medicus
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3. Full Text Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool
by Schlüter, Andreas and Szczepanowski, Rafael and Pühler, Alfred and Top, Eva M
FEMS microbiology reviews, ISSN 0168-6445, 07/2007, Volume 31, Issue 4, pp. 449 - 477
broad‐host‐range plasmid | integron | drug resistance | horizontal gene transfer | transposable element | Broad-host-range plasmid | Transposable element | Drug resistance | Integron | Horizontal gene transfer | Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Integrons | Genomics | Humans | Bacteria - drug effects | Bacterial Proteins - genetics | Gene Transfer, Horizontal | Waste Disposal, Fluid | Bacteria - genetics | DNA Transposable Elements | Bacteria - isolation & purification | DNA, Bacterial - genetics | Plasmids - genetics | Anti-Bacterial Agents - pharmacology | Drug Resistance, Bacterial - genetics | Water Microbiology | Genetic research | Drug resistance in microorganisms | Water treatment plants | Antibiotics | Analysis | Biotechnology industry | Backbone | Water treatment | Ammonium | Modules | Genomes | Wastewater treatment plants | Disinfectants | Antibiotic resistance | Bacteria | Cassettes | Genomic analysis | Medical treatment | Gene pool | Heredity | Wastewater facilities | Wastewater treatment | Heavy metals | Ammonium compounds | Infectious diseases | Quaternary ammonium compounds | Plasmids | Determinants | Quaternary ammonium salts | Index Medicus
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4. Full Text The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
by Schwientek, Patrick and Szczepanowski, Rafael and Rückert, Christian and Kalinowski, Jörn and Klein, Andreas and Selber, Klaus and Wehmeier, Udo F and Stoye, Jens and Pühler, Alfred
BMC genomics, ISSN 1471-2164, 03/2012, Volume 13, Issue 1, pp. 112 - 112
Complete genome sequence | Acarbose | Actinomycetes | AICE | Genomics | Actinoplanes | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Multigene Family - genetics | Gene Dosage - genetics | Chromosomes, Bacterial - genetics | Acarbose - metabolism | Molecular Sequence Annotation | Phylogeny | Actinomycetales - metabolism | Genome, Bacterial - genetics | DNA, Bacterial - genetics | Actinomycetales - genetics | Polymerase Chain Reaction | Anti-Bacterial Agents - biosynthesis | High-Throughput Nucleotide Sequencing | DNA, Ribosomal - genetics | Evolution, Molecular | Actinomycetales | Genetic aspects | Research | Bacterial genetics | Health aspects | Biotechnology | Neural networks | Genes | Phylogenetics | Software | Life sciences | Biosynthesis | Genetic engineering | Genomes | Manuscripts | Index Medicus
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5. Full Text Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110
by Schaffert, Lena and Schneiker-Bekel, Susanne and Gierhake, Jessica and Droste, Julian and Persicke, Marcus and Rosen, Winfried and Pühler, Alfred and Kalinowski, Jörn
Applied microbiology and biotechnology, ISSN 0175-7598, 06/2020, Volume 104, Issue 12, pp. 5395 - 5408
CRISPR/Cas9 | Carbohydrate-binding module family 20 (CBM-20) | Carbon source utilization | Starch-binding assay | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Glucose metabolism | Acarbose | Analysis | Carbohydrate metabolism | Glucose | Dextrose | Sugars | Diabetes therapy | Protein binding | CRISPR | Carbohydrates | Phenotypes | Transcription | Starch | Medical treatment | Diabetes mellitus | Maltose | Gene deletion | Metabolism | Carbon | Deletion mutant | Environmental stress | Proteins | Lactose | Cgt gene | DNA microarrays | Intestine | Liquid culture | Carbon sources | Index Medicus | Cas9 | Applied Genetics and Molecular Biotechnology
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