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1. Genetic engineering of microorganisms
by Pühler, A
1993, ISBN 3527300392, viii, 178
Microbial genetics | Genetic engineering
Book
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2. Advanced molecular genetics
by Pühler, A and Timmis, K. N
1984, ISBN 3540127402, ix, 347
Molecular genetics | Génétique moléculaire
Book
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3. Full Text Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing
by Jaenicke, Sebastian and Ander, Christina and Bekel, Thomas and Bisdorf, Regina and Dröge, Marcus and Gartemann, Karl-Heinz and Jünemann, Sebastian and Kaiser, Olaf and Krause, Lutz and Tille, Felix and Zakrzewski, Martha and Pühler, Alfred and Schlüter, Andreas and Goesmann, Alexander
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 1, p. e14519
Biogas production from renewable resources is attracting increased attention as an alternative energy source due to the limited availability of traditional... 
GEN. NOV | POPULATION | REACTOR | METHANOGENIC ARCHAEA | MULTIDISCIPLINARY SCIENCES | SEQUENCE | BACTERIUM | SP-NOV | DIVERSITY | MICROBIAL COMMUNITY ANALYSIS | 16S RIBOSOMAL-RNA | Sequence Analysis, RNA - methods | Bacteria, Anaerobic - isolation & purification | Fermentation - genetics | Bioreactors - microbiology | Methane - biosynthesis | Classification | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Phylogeny | Biofuels - microbiology | Methane | Cladistic analysis | RNA | Biomass energy | Analysis | Biogas | Fossil fuels | Nucleotide sequencing | Fermentation | Energy minerals | DNA sequencing | Biotechnology | Energy use | rRNA 16S | Communities | Taxonomy | Genomics | Carbon dioxide | Energy sources | Genomes | Methanogenic archaea | Rarefaction | Biomass | Genera | Molecular weight | Renewable resources | Gene sequencing | Taxa | Microorganisms | Alternative energy sources | Archives & records | Sustainability | Titanium | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | Biodegradation | Wood | Nucleotide sequence | Archaea | Cloning | Acetogenesis | Fatty acids | Sustainable yield | Studies | Renewable energy | Deoxyribonucleic acid | DNA
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4. Full Text Deep sequencing analysis reveals the mycoviral diversity of the virome of an avirulent isolate of Rhizoctonia solani AG-2-2 IV
by Bartholomäus, Anika and Wibberg, Daniel and Winkler, Anika and Pühler, Alfred and Schlüter, Andreas and Varrelmann, Mark
PLoS ONE, ISSN 1932-6203, 11/2016, Volume 11, Issue 11, p. e0165965
Rhizoctonia solani represents an important plant pathogenic Basidiomycota species complex and the host of many different mycoviruses, as indicated by frequent... 
MOLECULAR CHARACTERIZATION | ROSELLINIA-NECATRIX | DOUBLE-STRANDED-RNA | GENOME SEQUENCE | MULTIDISCIPLINARY SCIENCES | VEGETATIVE GROWTH | HYPOVIRULENCE | VIRULENCE | CHESTNUT BLIGHT | VIRUSES | MEGABIRNAVIRUS | Amino Acid Sequence | Genome, Viral - genetics | RNA Replicase - metabolism | DNA, Complementary - genetics | RNA Viruses - genetics | Phylogeny | Sequence Analysis, DNA | Sequence Alignment | RNA, Viral - genetics | RNA, Double-Stranded - genetics | Rhizoctonia - virology | High-Throughput Nucleotide Sequencing - methods | Fungal Viruses - genetics | Infection | RNA | Analysis | Biological control | Pests | Health aspects | RNA polymerases | Depth indicators | RNA viruses | Taxonomy | Plant resistance | Natural populations | Virulence | Double-stranded RNA | Viruses | Identification | Biology | Genomes | Research | Ribonucleic acid--RNA | Biodiversity | DNA-directed RNA polymerase | Fungi | Studies | Polymerase | Species diversity | Plant diseases | Host plants | Species | Biological diversity | Ribonucleic acids
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5. Full Text EDGAR: A software framework for the comparative analysis of prokaryotic genomes
by Blom, Jochen and Albaum, Stefan P and Doppmeier, Daniel and Pühler, Alfred and Vorhölter, Frank-Jörg and Zakrzewski, Martha and Goesmann, Alexander
BMC Bioinformatics, ISSN 1471-2105, 05/2009, Volume 10, Issue 1, pp. 154 - 154
Background: The introduction of next generation sequencing approaches has caused a rapid increase in the number of completely sequenced genomes. As one result... 
XANTHAN GUM | ORTHOLOGS | BIOCHEMICAL RESEARCH METHODS | IDENTIFICATION | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CAMPESTRIS PV. CAMPESTRIS | MICROBIAL PAN-GENOME | SEQUENCE | GENES | MATHEMATICAL & COMPUTATIONAL BIOLOGY | XANTHOMONAS | INSIGHTS | User-Computer Interface | Genome, Bacterial | Databases, Genetic | Models, Genetic | Software | Phylogeny | Genomics - methods | Sequence Analysis, DNA - methods | Cluster Analysis | Xanthomonas - genetics | Microbial genetics | Usage | Prokaryotes | Genetic aspects | Nucleotide sequencing | Research | Comparative analysis | Applications software | Methods
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6. Biotechnology
: a multi-volume comprehensive treatise
by Rehm, Hans-Jürgen and Reed, Gerald, 1913-2008
1991, 2nd, completely rev. ed., ISBN 3527283226, v.
Biotechnology
Book
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7. Genetic engineering of animals
by Pühler, A
1993, ISBN 9783527300419, 177
Transgenic animals
Book
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8. Full Text Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
by Stolze, Yvonne and Zakrzewski, Martha and Maus, Irena and Eikmeyer, Felix and Jaenicke, Sebastian and Rottmann, Nils and Siebner, Clemens and Pühler, Alfred and Schlüter, Andreas
Biotechnology for Biofuels, ISSN 1754-6834, 01/2015, Volume 8, Issue 1, p. 14
Background: Decomposition of biomass for biogas production can be practiced under wet and dry fermentation conditions. In contrast to the dry fermentation... 
16S rRNA | Metagenomics | Methanoculleus bourgensis | Methanogenesis | Fragment recruitment | Biogas | Microbial communities | Dry fermentation | Wet fermentation | GEN. NOV | ENERGY & FUELS | DRAFT GENOME | SP. NOV | GALLOLYTICUS SUBSP GALLOLYTICUS | SP NOV | BACTERIAL | COMPLETE GENOME SEQUENCE | BOVINE RUMEN | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DIVERSITY | STRAIN | Usage | Fermentation | Production processes | Methods | Methane | Enzymes | RNA | Biomass energy | Analysis | Genomics | Rankings | Information management
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9. Full Text The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110
by Wolf, Timo and Droste, Julian and Gren, Tetiana and Ortseifen, Vera and Schneiker-Bekel, Susanne and Zemke, Till and Pühler, Alfred and Kalinowski, Jörn
BMC Genomics, ISSN 1471-2164, 07/2017, Volume 18, Issue 1, pp. 562 - 14
Background: Acarbose is used in the treatment of diabetes mellitus type II and is produced by Actinoplanes sp. SE50/110. Although the biosynthesis of acarbose... 
Acarbose | Actinomycetes | AcrC | Transcriptional regulation | MalR | Actinoplanes | GLUCOSE REPRESSION | ESCHERICHIA-COLI | COMPLETE GENOME SEQUENCE | STREPTOMYCES-COELICOLOR A3 | MALTOSE UTILIZATION | RNA-SEQ | PROTEOME ANALYSIS | CLONING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DNA | GENETICS & HEREDITY | ALPHA-AMYLASE GENE | Multigene Family - genetics | Amino Acid Sequence | Sequence Deletion | Repressor Proteins - chemistry | Acarbose - metabolism | Genomics | Bacterial Proteins - chemistry | Bacterial Proteins - genetics | Repressor Proteins - genetics | Actinobacteria - genetics | Actinobacteria - metabolism | Bacterial Proteins - metabolism | Transcription, Genetic | Gene Expression Regulation, Bacterial | Repressor Proteins - metabolism | Care and treatment | Genes | Genetic research | Genetic aspects | Genomes | Hypoglycemic agents | Diabetes | Genetic transcription | DNA binding proteins | Diabetes therapy | Regulators | Transcription factors | Biosynthesis | Regulatory sequences | Hybridization | Proteins | E coli | Design improvements | DNA methylation | Clusters | Complementation | Bioinformatics | Deoxyribonucleic acid--DNA | Enzymes | Gene clusters | Cultivation | Diabetes mellitus | Cloning | Maltose | Metabolism | Polymerase chain reaction | Studies | Lactose | DNA microarrays | Plasmids | Electrophoretic mobility | Maltodextrin | Regulation | Genetic engineering | Transporter | ABC transporter | Binding sites
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10. Full Text Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
by Hassa, Julia and Maus, Irena and Off, Sandra and Pühler, Alfred and Scherer, Paul and Klocke, Michael and Schlüter, Andreas
Applied Microbiology and Biotechnology, ISSN 0175-7598, 6/2018, Volume 102, Issue 12, pp. 5045 - 5063
The production of biogas by anaerobic digestion (AD) of agricultural residues, organic wastes, animal excrements, municipal sludge, and energy crops has a firm... 
Biotechnology | Microbiology | Sewage digesters | Integrated omics | Metagenome-assembled genomes | Genome-enabled metatranscriptomics | Anaerobic digestion | Life Sciences | Taxonomic profiling | Biogas microbiome | Methanogenic Archaea | Microbial Genetics and Genomics | Methanogenesis | Biomass conversion | GEN. NOV | SP. NOV | MANURE DIGESTERS | REPLICATE ANAEROBIC DIGESTERS | SYNTROPHIC ACETATE OXIDATION | SP NOV | METHANOGENIC COMMUNITIES | MUNICIPAL SOLID-WASTE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | METHANE PRODUCTION | 16S RIBOSOMAL-RNA | Genetic aspects | Microbial colonies | Genomics | Methods | Proteomics | Anaerobic microorganisms | Microbial activity | Ammonium | Hemicellulose | Municipal wastes | rRNA 16S | Transcription | Taxonomy | Cellulose | Genomes | Organic wastes | Methanogenic archaea | Biopolymers | Gene sequencing | Microorganisms | Community involvement | Sustainability | Genetic analysis | Nutrients | Plants (botany) | Animal wastes | Cultivation | Nucleotide sequence | Archaea | Plant communities | Biogas | Organic farming | Gene expression | Agricultural wastes | Fermentation | Metabolism | Sludge | Substrates | Ammonia | Renewable energy | Crop residues | Process parameters | Nutrient availability | Mini-Review
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11. Full Text Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes
by Hain, Torsten and Ghai, Rohit and Billion, André and Kuenne, Carsten T and Steinweg, Christiane and Izar, Benjamin and Mohamed, Walid and Mraheil, Mobarak A and Domann, Eugen and Schaffrath, Silke and Kärst, Uwe and Goesmann, Alexander and Oehm, Sebastian and Pühler, Alfred and Merkl, Rainer and Vorwerk, Sonja and Glaser, Philippe and Garrido, Patricia and Rusniok, Christophe and Buchrieser, Carmen and Goebel, Werner and Chakraborty, Trinad
BMC Genomics, ISSN 1471-2164, 04/2012, Volume 13, Issue 1, pp. 144 - 144
Background: Listeria monocytogenes is a food-borne pathogen that causes infections with a high-mortality rate and has served as an invaluable model for... 
Isogenic deletion mutants | Prophage | Comparative genomics | Comparative transcriptomics | Lineage | Listeria monocytogenes | Flagella | Monocin | Murine infection | Gene decay | SURFACE PROTEIN | EUKARYOTIC CELLS | VIRULENCE FACTOR | PRFA-REGULATED GENE | IDENTIFICATION | INTERNALIN | EVOLUTION | PHENOTYPIC CHARACTERISTICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | GENETICS & HEREDITY | CASPASE-1 ACTIVATION | Nucleotide Motifs - genetics | Humans | Genetic Loci - genetics | Molecular Sequence Data | Nucleotides - genetics | Listeria monocytogenes - virology | Phylogeny | Virulence - genetics | Genes, Viral - genetics | Flagellin - metabolism | Bacteriophages - genetics | Gene Duplication - genetics | Listeria monocytogenes - metabolism | Membrane Proteins - metabolism | Genomics - methods | Disease Models, Animal | Multigene Family - genetics | Repetitive Sequences, Nucleic Acid - genetics | Genome, Bacterial | Gene Expression Profiling - methods | Mutation - genetics | Listeria monocytogenes - pathogenicity | Animals | Listeria monocytogenes - genetics | Polymorphism, Single Nucleotide - genetics | Listeriosis - microbiology | Mice | Gene Expression Regulation, Bacterial | Gene Transfer, Horizontal - genetics | Physiological aspects | Genetic aspects | Research | Genetic transcription | Genomics | Infection | Proteins | Listeria | Analysis | Genomes | Virulence (Microbiology) | Gene expression | Chromosomes | Health aspects | Microbiology | E coli | Cloning | Experiments | Adaptations | Pathogens | Animal models | Virulence | Data processing | Operons | Deletion mutant | metabolic flux | Serotypes | genomics | Models | Parasitism | Prophages | Sugar | Food | Life Sciences | Biochemistry, Molecular Biology
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12. Full Text Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
by Stolze, Yvonne and Bremges, Andreas and Rumming, Madis and Henke, Christian and Maus, Irena and Pühler, Alfred and Sczyrba, Alexander and Schlüter, Andreas
Biotechnology for Biofuels, ISSN 1754-6834, 07/2016, Volume 9, Issue 1, p. 156
Background: Biofuel production from conversion of biomass is indispensable in the portfolio of renewable energies. Complex microbial communities are involved... 
Metagenomics | Thermotogae | Fusobacteria | Cloacimonetes (WWE1) | Spirochaetes | Biogas | Genome binning | Anaerobic digestion | Microbial community | 16S rRNA gene | SEQUENCE DATA | ENERGY & FUELS | SP NOV | ANAEROBIC-DIGESTION | COMMUNITY COMPOSITION | GENE CONTENT | METHANOGENIC ARCHAEA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FULL-SCALE | FUSOBACTERIUM-MORTIFERUM | DARK-MATTER | BACTERIAL CANDIDATE DIVISION | RNA sequencing | Usage | Biomass energy | Compost plants | Genetic aspects | Research | Microbial colonies
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13. Full Text Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032
by Mentz, Almut and Neshat, Armin and Pfeifer-Sancar, Katharina and Pühler, Alfred and Rückert, Christian and Kalinowski, Jörn
BMC Genomics, ISSN 1471-2164, 10/2013, Volume 14, Issue 1, p. 714
Background: Recent discoveries on bacterial transcriptomes gave evidence that small RNAs (sRNAs) have important regulatory roles in prokaryotic cells. Modern... 
Bacteria | RNA regulation | High-throughput sequencing | Non-coding RNA | MYCOBACTERIUM-TUBERCULOSIS | BACTERIAL SOLUBLE-RNAS | ESCHERICHIA-COLI | REGULATORY NETWORK | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | AMINO-ACIDS | SIGMA-FACTOR SIGH | ANTISENSE RNA | GENETICS & HEREDITY | STREPTOMYCES-COELICOLOR | BINDING SITES | SMALL NONCODING RNAS | Hydrogen Peroxide - toxicity | Corynebacterium glutamicum - drug effects | Temperature | Corynebacterium glutamicum - genetics | Gene Library | Sodium Chloride - pharmacology | RNA, Messenger - metabolism | Diamide - toxicity | Corynebacterium glutamicum - metabolism | Sequence Analysis, RNA | RNA, Antisense - chemistry | RNA, Antisense - metabolism | RNA, Small Untranslated - chemistry | RNA, Bacterial - isolation & purification | RNA, Messenger - chemistry | High-Throughput Nucleotide Sequencing | Nucleic Acid Conformation | RNA, Bacterial - metabolism | RNA, Small Untranslated - metabolism | Corynebacteria | RNA sequencing | RNA | Physiological aspects | Genetic aspects | Research | Properties | Proteins | Studies | Biotechnology | Microbiology | E coli | Genomics | Software | Genomes | Bacteriology | Data bases | Transfer RNA
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