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Agronomy Journal, ISSN 0002-1962, 01/2003, Volume 95, Issue 1, pp. 99 - 113
Functional genomics is the systematic study of genome-wide effects of gene expression on organism growth and development with the ultimate aim of understanding... 
AGRONOMY | AFFECTING GRAIN-SORGHUM | GENOTYPE | MARKER-ASSISTED SELECTION | MODEL DEVELOPMENT | STAY GREEN | DROUGHT | POPULATIONS | IMPROVE YIELD | BICOLOR L. MOENCH | QU-GENE | APSIM-Sorg | Simulation models | Crops | Genes | Gene expression | Traits | Breeding programs | Plant breeding | Simulation | Genotype environment interaction | Recurrent selection | Dry farming | Selective breeding | Crop yield | Genotypes | Adaptation
Journal Article
CROP SCIENCE, ISSN 0011-183X, 09/2004, Volume 44, Issue 5, pp. 1560 - 1571
The advent of high throughput molecular technologies has led to an expectation that breeding programs will use marker-trait associations to conduct... 
AGRONOMY | BIAS | QUANTITATIVE TRAIT | GENES | DIMENSIONAL GENOME SEARCHES | LOCI | MAIZE | SAMPLES | EPISTASIS | SIMULATION
Journal Article
Crop and Pasture Science, ISSN 1836-0947, 2014, Volume 65, Issue 4, pp. 311 - 336
For the foreseeable future, plant breeding methodology will continue to unfold as a practical application of the scaling of quantitative biology. These efforts... 
envirotyping | genetics | modeling | selection | genotyping | physiology | prediction | phenotyping | MARKER-ASSISTED SELECTION | ABIOTIC STRESS TOLERANCE | US CORN-BELT | QUANTITATIVE TRAIT LOCUS | IMPROVED GRAIN-YIELD | AGRICULTURE, MULTIDISCIPLINARY | COMPUTER-SIMULATION | MAIZE HYBRIDS | IMPROVING DROUGHT TOLERANCE | GENOTYPE-ENVIRONMENT INTERACTIONS | ROW-COLUMN DESIGNS
Journal Article
Journal Article
Crop Science, ISSN 0011-183X, 09/2003, Volume 43, Issue 5, pp. 1764 - 1773
Breeding strategies used by plant breeders are many and varied, making it difficult to compare efficiencies of different breeding strategies through field... 
AGRONOMY | QUANTITATIVE TRAITS | GENE | MODELS | CROPS | SELECTION | WHEAT
Journal Article
Bioinformatics, ISSN 1367-4803, 1998, Volume 14, Issue 7, pp. 632 - 653
Motivation: Classical quantitative genetics theory makes a number of simplifying assumptions in order to develop mathematical expressions that describe the... 
TEST ENVIRONMENTS | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOCHEMICAL RESEARCH METHODS | POPULATIONS | SELECTION | BIOLOGY, MISCELLANEOUS | PROGRAM | Genotype | Models, Genetic | Software | Epistasis, Genetic | Computer Simulation
Journal Article
Journal of Experimental Botany, ISSN 0022-0957, 1/2011, pp. 855 - 868
The effectiveness of breeding strategies to increase drought resistance in crops could be increased further if some of the complexities in gene-to-phenotype... 
Quantitative trait loci | Landscapes | Crop science | Hammers | Breeding | Corn | Population genetics | Modeling | Genotypes | Phenotypic traits | REVIEW PAPER
Journal Article
Australian Journal of Agricultural Research, ISSN 0004-9409, 2005, Volume 56, Issue 9, pp. 947 - 960
Journal Article
Genetics, ISSN 0016-6731, 06/2003, Volume 164, Issue 2, pp. 741 - 745
The recurrent intermating of F-2 individuals for some number of generations followed by several generations of inbreeding produces an intermated recombinant... 
GENOME | GENETICS & HEREDITY | MAIZE | Models, Theoretical | Genetics, Population | Crossing Over, Genetic | Genes, Plant | Chromosome Mapping | Meiosis | Genetic Markers | Plants - genetics | Recombination, Genetic | Inbreeding | Models, Genetic | Crosses, Genetic | Genetic Linkage | Genetic research | Genetic aspects
Journal Article
Genetics, ISSN 0016-6731, 04/2004, Volume 166, Issue 4, pp. 1715 - 1725
Journal Article
Complexity, ISSN 1076-2787, 07/2002, Volume 7, Issue 6, pp. 31 - 47
The haploid NK model developed by Kauffman can be extended to diploid genomes and to incorporate gene‐by‐environment interaction effects in combination with... 
diploid | gene‐by‐environment interaction | model | plant breeding | epistasis | Diploid | NK model | Gene-by-environment interaction | Epistasis | Plant breeding
Journal Article
Australian Journal of Agricultural Research, ISSN 0004-9409, 2005, Volume 56, Issue 9, pp. 895 - 918
The premise that is explored in this paper is that in some cases, in order to make progress in the design of molecular breeding strategies for complex traits,... 
Validation | Gene-networks | Interaction | Prediction | Complexity | gene-networks | complexity | AFFECTING GRAIN-SORGHUM | MARKER-ASSISTED SELECTION | ENVIRONMENT INTERACTIONS | SACCHAROMYCES-CEREVISIAE | BREEDING STRATEGIES | WATER-DEFICIT | METABOLIC NETWORKS | AGRICULTURE, MULTIDISCIPLINARY | interaction | prediction | COMPUTER-SIMULATION | MAIZE | CROP SIMULATION | validation
Journal Article
CROP SCIENCE, ISSN 0011-183X, 11/2004, Volume 44, Issue 6, pp. 2006 - 2018
Plant breeders use many different breeding methods to develop superior cultivars. However, it is difficult, cumbersome, and expensive to evaluate the... 
SINGLE SEED DESCENT | COMPUTER-SIMULATION | POPULATIONS | AGRONOMY | GENE
Journal Article
In Silico Biology, ISSN 1386-6338, 2002, Volume 2, Issue 2, pp. 151 - 164
In this paper we refer to the gene-to-phenotype modeling challenge as the GP problem. Integrating information across levels of organization within a... 
Phenotype | Genes, Plant | Computer Simulation | Gene Frequency | Selection, Genetic | Genotype | Poaceae - physiology | Crops, Agricultural - genetics | Poaceae - genetics | Genome
Journal Article
Genetics, ISSN 0016-6731, 04/2004, Volume 166, Issue 4, p. 1715
  Classical quantitative genetics has applied linear modeling to the problem of mapping genotypic to phenotypic variation. Much of this theory was developed... 
Genetics | Genetic diversity | Gene expression | Molecular biology
Journal Article
CROP SCIENCE, ISSN 0011-183X, 11/2004, Volume 44, Issue 6, pp. 1907 - 1913
Journal Article
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