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1. Full Text Transmissible cancers in an evolutionary context
: Transmissible cancer evolution
by Ujvari, Beata and Papenfuss, Anthony T and Belov, Katherine
BioEssays, ISSN 0265-9247, 07/2016, Volume 38, pp. S14 - S23
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2. Full Text Diversity of conotoxin gene superfamilies in the venomous snail, conus victoriae
by Robinson, Samuel D and Safavi-Hemami, Helena and McIntosh, Lachlan D and Purcell, Anthony W and Norton, Raymond S and Papenfuss, Anthony T
PLoS ONE, ISSN 1932-6203, 02/2014, Volume 9, Issue 2, p. e87648
Animal venoms represent a vast library of bioactive peptides and proteins with proven potential, not only as research tools but also as drug leads and... 
ALPHA-CONOTOXINS | PEPTIDES | ACID | SODIUM-CHANNELS | MULTIDISCIPLINARY SCIENCES | T-SUPERFAMILY | ION-CHANNEL | POSTTRANSLATIONAL MODIFICATIONS | TEXTILE | IDENTIFICATION | MOLECULAR PHYLOGENY | Amino Acid Sequence | Sequence Analysis, Protein | Animals | Conus Snail - genetics | Molecular Sequence Annotation | DNA, Complementary - genetics | Molecular Sequence Data | Conotoxins - genetics | Proteins | Markov processes | Marine toxins | Venom | Analysis | Genes | Medical research | Neurosciences | Peptides | Markov chains | Mollusks | Biochemistry | Gene expression | Biological activity | Gene sequencing | Receptors | Annotations | Analgesics | Snails | Venom gland | Ion channels (ligand-gated) | Ion channels | Molecular biology | Bioinformatics | Conotoxins | Pharmaceutical sciences | Hidden Markov models | Markov models
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3. Full Text Abstract 1301: Using the evolutionary ages of genes to understand hallmark features of cancer
by Goode, David L and Trigos, Anna S and Papenfuss, Anthony T and Pearson, Richard B
Cancer Research, ISSN 0008-5472, 07/2018, Volume 78, Issue 13 Supplement, pp. 1301 - 1301
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4. Full Text Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
by Cameron, DL and Di Stefano, L and Papenfuss, AT
NATURE COMMUNICATIONS, ISSN 2041-1723, 07/2019, Volume 10, Issue 1, pp. 3240 - 11
In recent years, many software packages for identifying structural variants (SVs) using whole-genome sequencing data have been released. When published, a new... 
ACCURATE | SV | MULTIDISCIPLINARY SCIENCES | COPY NUMBER VARIATION | SEQUENCING DATA | PAIRED-END | VARIATION DISCOVERY | CANCER GENOMES | DELETIONS | INSERTIONS | RESOURCE | Evaluation | Algorithms | Software packages | Computer simulation | Cell lines | Genomes | Calibration | Computer programs | Gene sequencing
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5. Full Text BET inhibitor resistance emerges from leukaemia stem cells
by Fong, Chun Yew and Gilan, Omer and Lam, Enid Y. N and Rubin, Alan F and Ftouni, Sarah and Tyler, Dean and Stanley, Kym and Sinha, Devbarna and Yeh, Paul and Morison, Jessica and Giotopoulos, George and Lugo, Dave and Jeffrey, Philip and Lee, Stanley Chun-Wei and Carpenter, Christopher and Gregory, Richard and Ramsay, Robert G and Lane, Steven W and Abdel-Wahab, Omar and Kouzarides, Tony and Johnstone, Ricky W and Dawson, Sarah-Jane and Huntly, Brian J. P and Prinjha, Rab K and Papenfuss, Anthony T and Dawson, Mark A
Nature, ISSN 0028-0836, 09/2015, Volume 525, Issue 7570, pp. 538 - 542
Bromodomain and extra terminal protein (BET) inhibitors are first-in-class targeted therapies that deliver a newtherapeutic opportunity by directly targeting... 
SELECTIVE-INHIBITION | ACCURATE | CHROMATIN | MECHANISM | MULTIDISCIPLINARY SCIENCES | ACUTE MYELOID-LEUKEMIA | DRUG-RESISTANCE | MUTATIONS | SEQUENCING DATA | CANCER | DISCOVERY | Chromatin - metabolism | Transcription, Genetic - drug effects | Clone Cells - drug effects | Neoplastic Stem Cells - drug effects | Epigenesis, Genetic | Humans | Leukemia, Myeloid, Acute - metabolism | Molecular Targeted Therapy | Neoplastic Stem Cells - metabolism | Leukemia, Myeloid, Acute - drug therapy | Neoplastic Stem Cells - pathology | Gene Expression Regulation, Neoplastic - drug effects | Hematopoietic Stem Cells - drug effects | Benzodiazepines - pharmacology | Leukemia, Myeloid, Acute - pathology | Cells, Cultured | Nuclear Proteins - metabolism | Transcription Factors - antagonists & inhibitors | Hematopoietic Stem Cells - metabolism | Clone Cells - metabolism | beta Catenin - metabolism | Azepines - pharmacology | Transcription Factors - metabolism | Triazoles - pharmacology | Drug Resistance, Neoplasm - genetics | Animals | Clone Cells - pathology | Wnt Signaling Pathway - drug effects | Genes, myc - genetics | Hematopoietic Stem Cells - cytology | Nuclear Proteins - antagonists & inhibitors | Cell Line, Tumor | Mice | Drug Resistance, Neoplasm - drug effects | Leukemia, Myeloid, Acute - genetics | Proteins | Leukemia | Cloning | Cell cycle | Stem cells | Epigenetics | Apoptosis
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6. Full Text Altered interactions between unicellular and multicellular genes drive hallmarks of transformation in a diverse range of solid tumors
by Trigos, Anna S and Pearson, Richard B and Papenfuss, Anthony T and Goode, David L
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2017, Volume 114, Issue 24, pp. 6406 - 6411
Tumors of distinct tissues of origin and genetic makeup display common hallmark cellular phenotypes, including sustained proliferation, suppression of cell... 
Evolution | Systems biology | Transcriptomics | Atavism | Cancer | systems biology | SURVIVAL | EVOLUTIONARY | MULTIDISCIPLINARY SCIENCES | atavism | transcriptomics | RESISTANCE | cancer | evolution | EXPRESSION | HISTORY | Genetic aspects | Genetic transformation | Comparative analysis | Health aspects | Tumors | Biological Sciences
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7. Full Text Evolution of cnidarian trans‐defensins: Sequence, structure and exploration of chemical space
by Mitchell, Michela L and Shafee, Thomas and Papenfuss, Anthony T and Norton, Raymond S
Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, 07/2019, Volume 87, Issue 7, pp. 551 - 560
Many of the small, cysteine‐rich ion‐channel modulatory peptides found in Cnidaria are distantly related to vertebrate defensins (of the trans‐defensin... 
cysteine‐rich peptides | Corallimorpharia | evolution | sea anemone | trans‐defensins | Cnidaria | Discovery and exploration | Medical research | Cysteine | Peptides | Scholarships | Analysis | Outer space | Markov processes | Medicine, Experimental | Chemical properties | Cystine | Endemic species | Exploration | Homology | Markov chains | Subgroups | Organic chemistry | Vertebrates | Defensins | Clusters | Evolution | Invertebrates
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8. Full Text Elementary: Breast cancer culprits leave their signatures on the double helix
by Merino, Delphine and Pal, Bhupinder and Papenfuss, Anthony T
Cell Death and Differentiation, ISSN 1350-9047, 10/2016, Volume 23, Issue 10, pp. 1577 - 1578
and
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9. Altered interactions between unicellular and multicellular genes drive hallmarks of transformation in a diverse range of solid tumors
by Anna S Trigos and Richard B Pearson and Anthony T Papenfuss and David L Goode
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2017, Volume 114, Issue 24, p. 6406
Tumors of distinct tissues of origin and genetic makeup display common hallmark cellular phenotypes, including sustained proliferation, suppression of cell... 
Transformation | Transcription | Genes | Biological evolution | Genomes | Ribonucleic acid--RNA | Metabolism | Gene expression | Tissues | Cells | Biological activity | Gene sequencing | Interfaces | Cell death | Regulatory mechanisms (biology) | Evolution | Tumorigenesis | Transformations | Solid tumors | Tumors | Cancer
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10. Full Text GRIDSS: Sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
by Cameron, Daniel L and Schröder, Jan and Penington, Jocelyn Sietsma and Do, Hongdo and Molania, Ramyar and Dobrovic, Alexander and Speed, Terence P and Papenfuss, Anthony T
Genome Research, ISSN 1088-9051, 12/2017, Volume 27, Issue 12, pp. 2050 - 2060
The identification of genomic rearrangements with high sensitivity and specificity using massively parallel sequencing remains a major challenge, particularly... 
VARIANTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESOLUTION | STRUCTURAL-VARIATION | IDENTIFICATION | VARIATION DISCOVERY | CANCER GENOMES | INSERTIONS | INDELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | PAIRED-END | READS | Cell Line | Genomic Structural Variation | Neoplasms - genetics | Computer Simulation | Gene Rearrangement | Humans | Plasmodium falciparum - genetics | Sensitivity and Specificity | Software | Genome | Genomics - methods | Genome-wide association studies | Usage | Research | Gene mutations | Genetic variation | Genomics | Method
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11. Full Text A newly discovered protein export machine in malaria parasites
by Lundie, Rachel J and Rug, Melanie and Sanders, Paul R and Boddey, Justin A and Gilson, Paul R and Maier, Alexander G and de Koning-Ward, Tania F and Smith, Brian J and Papenfuss, Anthony T and Cowman, Alan F and Crabb, Brendan S
Nature, ISSN 0028-0836, 06/2009, Volume 459, Issue 7249, pp. 945 - 949
Several hundred malaria parasite proteins are exported beyond an encasing vacuole and into the cytosol of the host erythrocyte, a process that is central to... 
FALCIPARUM-INFECTED ERYTHROCYTES | PLASMODIUM-FALCIPARUM | MULTIDISCIPLINARY SCIENCES | TRAFFICKING | SURFACE | TARGETING SIGNAL | RED-BLOOD-CELLS | HOST ERYTHROCYTE | BINDING PROTEIN | VIRULENCE | INVASION INHIBITORY ANTIBODIES | Malaria, Falciparum - parasitology | Multiprotein Complexes - metabolism | Multiprotein Complexes - chemistry | Animals | Protozoan Proteins - metabolism | Animals, Genetically Modified | Models, Biological | Protein Binding | Plasmodium falciparum - metabolism | Protein Transport | Malaria | Genetic aspects | Parasites | Proteins | Mortality | Erythrocytes | Amino acids | Blood | Cell adhesion & migration
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12. Full Text Abstract 87: Clustered somatic mutations are frequent in transcription factor binding motifs in melanoma and other cutaneous malignancies
by Colebatch, Andrew J and di Stefano, Leon and Wong, Stephen Q and Papenfuss, Anthony T and McArthur, Grant A
Cancer Research, ISSN 0008-5472, 07/2016, Volume 76, Issue 14 Supplement, pp. 87 - 87
We sought to explore the etiology, frequency and clinicopathologic associations of clustered noncoding hotspot mutations in cutaneous malignancies (melanoma,... 
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13. Full Text Correction: A statistical framework for analyzing deep mutational scanning data [Genome Biol., 18, 1, (2017) (150)] DOI: 10.1186/s13059-017-1272-5
by Rubin, Alan F and Gelman, Hannah and Lucas, Nathan and Bajjalieh, Sandra M and Papenfuss, Anthony T and Speed, Terence P and Fowler, Douglas M
Genome Biology, ISSN 1474-7596, 02/2018, Volume 19, Issue 1
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14. Full Text How the evolution of multicellularity set the stage for cancer
by Trigos, Anna S and Pearson, Richard B and Papenfuss, Anthony T and Goode, David L
British Journal of Cancer, ISSN 0007-0920, 01/2018, Volume 118, Issue 2, pp. 145 - 152
Neoplastic growth and many of the hallmark properties of cancer are driven by the disruption of molecular networks established during the emergence of... 
systems biology | SURVIVAL | multicellularity | NETWORK | MECHANISM | atavism | evolution | BORTEZOMIB | networks | TRANSLATION | MEDICINE | INHIBITION | ONCOLOGY | network medicine | TARGETS | RNA-POLYMERASE I | CHEMOTHERAPY RESISTANCE | Biological Evolution | Animals | Neoplasms - genetics | Gene Regulatory Networks | Neoplasms - pathology | Humans | Networks | Transformation | Genes | Gene regulation | Biological evolution | Adaptability | Homeostasis | Gene expression | Cell interactions | Microprocessors | Liabilities | Evolution | Tumorigenesis | Cancer | Tumors | Review
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15. Full Text Targeting of the Tumor Suppressor GRHL3 by a miR-21-Dependent Proto-Oncogenic Network Results in PTEN Loss and Tumorigenesis
by Darido, Charbel and Georgy, Smitha R and Wilanowski, Tomasz and Dworkin, Sebastian and Auden, Alana and Zhao, Quan and Rank, Gerhard and Srivastava, Seema and Finlay, Moira J and Papenfuss, Anthony T and Pandolfi, Pier Paolo and Pearson, Richard B and Jane, Stephen M
Cancer Cell, ISSN 1535-6108, 2011, Volume 20, Issue 5, pp. 635 - 648
Despite its prevalence, the molecular basis of squamous cell carcinoma (SCC) remains poorly understood. Here, we identify the developmental transcription... 
KAPPA-B-KINASE | NONMELANOMA SKIN-CANCER | GRAINY-HEAD | ONCOLOGY | NEGATIVE REGULATION | SQUAMOUS-CELL CARCINOMA | IKK-ALPHA | EXPRESSION SIGNATURE | TRANSCRIPTION FACTOR | MICE LACKING | WOUND REPAIR | CELL BIOLOGY | Cell Proliferation | Carcinoma, Squamous Cell - genetics | Carcinoma, Squamous Cell - chemically induced | Gene Expression Regulation, Neoplastic | Homeostasis | Molecular Sequence Data | MicroRNAs - metabolism | DNA-Binding Proteins - metabolism | Cell Differentiation - genetics | Cell Transformation, Neoplastic - genetics | Base Sequence | Gene Deletion | Tumor Suppressor Proteins - genetics | PTEN Phosphohydrolase - genetics | Genetic Predisposition to Disease | Tumor Suppressor Proteins - metabolism | Skin Neoplasms - chemically induced | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Transcription Factors - metabolism | Tumor Suppressor Proteins - physiology | Keratinocytes - pathology | Sequence Alignment | Animals | Skin Neoplasms - genetics | Mice | MicroRNAs - genetics | MicroRNAs - physiology | Squamous cell carcinoma | Skin
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16. Full Text Peptide toxins in australian sea anemones: Transcriptomics, peptidomics and distribution
by Mitchell, Michela L and Hamilton, Brett R and Morales, Rodrigo A.V and Papenfuss, Anthony T and Purcell, Anthony W and Undheim, Eivind A.B and Norton, Raymond S
Toxicon, ISSN 0041-0101, 02/2019, Volume 158, pp. S47 - S47
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17. Full Text Transmissible cancers in an evolutionary context
by Ujvari, Beata and Papenfuss, Anthony T and Belov, Katherine
BioEssays, ISSN 0265-9247, 07/2016, Volume 38, Issue 7, pp. S14 - S23
Cancer is an evolutionary and ecological process in which complex interactions between tumour cells and their environment share many similarities with... 
Tasmanian devil facial tumour disease | clam leukaemia | cancer evolution | micro‐environment | canine transmissible venereal tumour | micro-environment | TASMANIAN DEVIL | STEM-CELLS | INITIATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | IMMUNOHISTOCHEMICAL CHARACTERIZATION | IMMUNE ESCAPE | CLONAL EVOLUTION | MYA-ARENARIA | ORIGIN | BIOLOGY | STROMAL FIBROBLASTS | FACIAL-TUMOR DISEASE | Biological Evolution | Animals | Neoplasms - genetics | Humans | Female | Male | Disease Transmission, Infectious | Neoplasms - pathology | Leukemia | Communicable diseases | Analysis | Cancer cells | Devil facial tumor disease | Canine transmissible venereal tumor | Research | Cancer
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