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1. Full Text Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?
by Paramasivam, Nagarajan and Habeck, Michael and Linke, Dirk
BMC genomics, ISSN 1471-2164, 09/2012, Volume 13, Issue 1, pp. 510 - 510
Outer membrane β-barrel protein biogenesis | β-barrel assembly machinery | Outer membrane | Short linear motifs | Species specificity | BamA | Clustering | Frequency plots | GLAM2 | CLANS | Hellinger distance | C-terminal β-strand | Gram-negative bacteria | Principal component analysis | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Amino Acid Sequence | Neisseria meningitidis - metabolism | Species Specificity | Gene Frequency | Bacterial Outer Membrane Proteins - chemistry | Escherichia coli Proteins - metabolism | Amino Acid Motifs | Lipopolysaccharides | Cell Membrane - chemistry | Bacterial Outer Membrane Proteins - metabolism | Gram-Negative Bacteria - chemistry | Escherichia coli - genetics | Escherichia coli - metabolism | Escherichia coli Proteins - genetics | Neisseria meningitidis - genetics | Gram-Negative Bacteria - genetics | Escherichia coli Proteins - chemistry | Principal Component Analysis | Bacterial Outer Membrane Proteins - genetics | Membrane lipids | Magneto-electric machines | Analysis | Escherichia coli | Bacteria | Machinery | Membrane proteins | Proteins | Lipoproteins | Microbiology | Peptides | E coli | Biosynthesis | Bacteriology | Binding sites | Index Medicus
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2. Full Text Efficient Subfractionation of Gram-Negative Bacteria for Proteomics Studies
by Thein, Marcus and Sauer, Guido and Paramasivam, Nagarajan and Grin, Iwan and Linke, Dirk
Journal of proteome research, ISSN 1535-3893, 12/2010, Volume 9, Issue 12, pp. 6135 - 6147
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Electrophoresis, Polyacrylamide Gel | Cell Fractionation - methods | Bacterial Outer Membrane Proteins - analysis | Escherichia coli - cytology | Gram-Negative Bacteria - metabolism | Proteome - analysis | Bacterial Outer Membrane Proteins - isolation & purification | Bacterial Proteins - analysis | Mass Spectrometry | Escherichia coli - metabolism | Gram-Negative Bacteria - cytology | Proteomics - methods | Bacterial Proteins - isolation & purification | Index Medicus
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3. Full Text Effect of Trichostatin A on radiation induced epithelial-mesenchymal transition in A549 cells
by Nagaraja, SunilGowda Sunnaghatta and Krishnamoorthy, Vishnuvarthan and Raviraj, Raghavi and Paramasivam, Alagudinesh and Nagarajan, Devipriya
Biochemical and biophysical research communications, ISSN 0006-291X, 12/2017, Volume 493, Issue 4, pp. 1534 - 1541
Docking studies | Trichostatin A | TGFβ1 | EMT | Radiation | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Lung Neoplasms - genetics | A549 Cells | Lung Neoplasms - drug therapy | Snail Family Transcription Factors - metabolism | Epithelial-Mesenchymal Transition - radiation effects | Humans | RNA, Messenger - genetics | Lung Neoplasms - radiotherapy | Epithelial-Mesenchymal Transition - drug effects | Epithelial-Mesenchymal Transition - genetics | RNA, Messenger - metabolism | Zinc Finger E-box-Binding Homeobox 1 - genetics | RNA, Neoplasm - metabolism | Zinc Finger E-box-Binding Homeobox 1 - metabolism | Cell Movement - radiation effects | Cell Movement - drug effects | Snail Family Transcription Factors - genetics | Signal Transduction - drug effects | RNA, Neoplasm - genetics | Histone Deacetylase Inhibitors - pharmacology | Signal Transduction - radiation effects | Hydroxamic Acids - pharmacology | Smad Proteins - metabolism | Transforming Growth Factor beta - metabolism | Lung cancer | Force and energy | Stem cells | Development and progression | Bone morphogenetic proteins | Radiotherapy | Transforming growth factors | Metastasis | Index Medicus
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4. Full Text Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer
by Ishaque, Naveed and Abba, Mohammed L and Hauser, Christine and Patil, Nitin and Paramasivam, Nagarajan and Huebschmann, Daniel and Leupold, Jörg Hendrik and Balasubramanian, Gnana Prakash and Kleinheinz, Kortine and Toprak, Umut H and Hutter, Barbara and Benner, Axel and Shavinskaya, Anna and Zhou, Chan and Gu, Zuguang and Kerssemakers, Jules and Marx, Alexander and Moniuszko, Marcin and Kozlowski, Miroslaw and Reszec, Joanna and Niklinski, Jacek and Eils, Jürgen and Schlesner, Matthias and Eils, Roland and Brors, Benedikt and Allgayer, Heike
Nature communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 4782 - 14
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Anoctamins - genetics | Colorectal Neoplasms - genetics | Humans | Middle Aged | 3' Untranslated Regions - genetics | Hepatic Stellate Cells - metabolism | Male | Proto-Oncogene Proteins c-akt - genetics | Vascular Endothelial Growth Factor Receptor-2 - genetics | Extracellular Matrix - genetics | Colorectal Neoplasms - therapy | Neoplasm Metastasis | Membrane Transport Proteins - genetics | Female | Adenocarcinoma - genetics | Liver Neoplasms - secondary | Nuclear Proteins - genetics | Precision Medicine | Proto-Oncogene Proteins c-cbl - genetics | Cell Adhesion - genetics | Liver Neoplasms - genetics | Signal Transduction | RNA, Untranslated | Rho Guanine Nucleotide Exchange Factors - genetics | Transcription Factors - genetics | Forkhead Transcription Factors - genetics | Adenocarcinoma - secondary | Whole Genome Sequencing | Receptor, Platelet-Derived Growth Factor alpha - genetics | Adaptor Proteins, Signal Transducing - genetics | TRPM Cation Channels - genetics | Aged | Colorectal Neoplasms - pathology | BRCA2 Protein - genetics | Therapy | Colorectal carcinoma | Colorectal cancer | AKT protein | Genomes | Metastasis | Metastases | Cell adhesion & migration | Gene sequencing | Transient receptor potential proteins | Foxp2 protein | Transcription activation | Cell adhesion | Evolution | Extracellular matrix | Lesions | BRCA2 protein | Fibroblast growth factor 1 | AKT2 protein | Breast cancer | 1-Phosphatidylinositol 3-kinase | Genetic programs | Immunosuppression | Hypotheses | PD-L1 protein | Mutation | Colonization | Tumors | Index Medicus
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5. Full Text Characterization of rare germline variants in familial multiple myeloma
by Catalano, Calogerina and Paramasivam, Nagarajan and Blocka, Joanna and Giangiobbe, Sara and Huhn, Stefanie and Schlesner, Matthias and Weinhold, Niels and Sijmons, Rolf and de Jong, Mirjam and Langer, Christian and Preuss, Klaus-Dieter and Nilsson, Björn and Durie, Brian and Goldschmidt, Hartmut and Bandapalli, Obul Reddy and Hemminki, Kari and Försti, Asta
Blood cancer journal (New York), ISSN 2044-5385, 02/2021, Volume 11, Issue 2, pp. 33 - 33
Index Medicus
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6. Full Text Whole Exome Sequencing Identifies APCDD1 and HDAC5 Genes as Potentially Cancer Predisposing in Familial Colorectal Cancer
by Skopelitou, Diamanto and Miao, Beiping and Srivastava, Aayushi and Kumar, Abhishek and Kuswick, Magdalena and Dymerska, Dagmara and Paramasivam, Nagarajan and Schlesner, Matthias and Lubinski, Jan and Hemminki, Kari and Försti, Asta and Bandapalli, Obul Reddy
International journal of molecular sciences, ISSN 1422-0067, 02/2021, Volume 22, Issue 4, p. 1837
HDAC5 | 5´UTR | APCDD1 | germline variant | whole exome sequencing | familial colorectal cancer
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7. Full Text Whole genome sequencing reveals DICER1 as a candidate predisposing gene in familial Hodgkin lymphoma
by Bandapalli, Obul Reddy and Paramasivam, Nagarajan and Giangiobbe, Sara and Kumar, Abhishek and Benisch, Wolfgang and Engert, Andreas and Witzens‐Harig, Mathias and Schlesner, Mathias and Hemminki, Kari and Försti, Asta
International journal of cancer, ISSN 0020-7136, 10/2018, Volume 143, Issue 8, pp. 2076 - 2078
Life Sciences & Biomedicine | Oncology | Science & Technology | Genetic Predisposition to Disease - genetics | Ribonuclease III - genetics | Hodgkin Disease - genetics | Humans | Risk Factors | Male | Whole Genome Sequencing - methods | Hodgkin Disease - etiology | DEAD-box RNA Helicases - genetics | Adult | Female | Aged | Child | Lymphomas | Genetic aspects | Nucleotide sequencing | Genomics | Cancer | DNA sequencing | Genomes | Lymphoma | Hodgkin's disease | Gene sequencing | Index Medicus | Clinical Medicine | Medical and Health Sciences | Klinisk medicin | Cancer and Oncology | Medicin och hälsovetenskap | Cancer och onkologi
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8. Full Text Familial Cancer Variant Prioritization Pipeline version 2 (FCVPPv2) applied to a papillary thyroid cancer family
by Kumar, Abhishek and Bandapalli, Obul Reddy and Paramasivam, Nagarajan and Giangiobbe, Sara and Diquigiovanni, Chiara and Bonora, Elena and Eils, Roland and Schlesner, Matthias and Hemminki, Kari and Försti, Asta
Scientific reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 11635 - 12
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Peptidase | Papillary thyroid cancer | Pipelines | Amino acids | Genomes | Breast cancer | Carboxypeptidase | Intolerance | Thyroid cancer | Pedigree | Extracellular matrix | Adipogenesis | Thyroid | Tumors | Index Medicus | Clinical Medicine | Medicinsk genetik | Basic Medicine | Medical Genetics | Medical and Health Sciences | Medicin och hälsovetenskap | Medicinska och farmaceutiska grundvetenskaper | Klinisk medicin | Cancer and Oncology | Cancer och onkologi
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9. Full Text Clubsub-P: Cluster-based subcellular localization prediction for gram-negative bacteria and archaea
by Paramasivam, Nagarajan and Linke, Dirk
Frontiers in microbiology, ISSN 1664-302X, 2011, Volume 2, pp. 218 - 218
Signal peptide | Protein homology | Clustering | Start codon prediction | Subcellular localization prediction | Life Sciences & Biomedicine | Microbiology | Science & Technology | signal peptide | clustering | gene annotation | start codon prediction | subcellular localization prediction | protein homology
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10. Full Text SO3H@carbon powder derived from waste orange peel: An efficient, nano-sized greener catalyst for the synthesis of dihydropyrano[2,3-c]pyrazole derivatives
by Nagasundaram, Nagarajan and Kokila, Murugesan and Sivaguru, Paramasivam and Santhosh, Rajendiran and Lalitha, Appaswami
Advanced powder technology : the international journal of the Society of Powder Technology, Japan, ISSN 0921-8831, 04/2020, Volume 31, Issue 4, pp. 1516 - 1528
Dihydropyranopyrazoles | Nano-size | Heterogeneous catalyst | Biomass conversion | Carbon modified sulfonic acid
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11. Full Text Segregation and potential functional impact of a rare stop-gain PABPC4L variant in familial atypical Parkinsonism
by Aslam, Muhammad and Ullah, Anwar and Paramasivam, Nagarajan and Kandasamy, Nirosiya and Naureen, Saima and Badshah, Mazhar and Khan, Kafaitullah and Wajid, Muhammad and Abbasi, Rashda and Eils, Roland and Brockmann, Marc A and Schlesner, Matthias and Ahmad, Nafees and von Engelhardt, Jakob
Scientific reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 13576 - 8
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Humans | Middle Aged | Brain Stem - metabolism | Atrophy | Cell Nucleus - metabolism | Cerebellum - diagnostic imaging | Brain Stem - pathology | Poly(A)-Binding Proteins - metabolism | HEK293 Cells | Parkinsonian Disorders - diagnostic imaging | Adult | Female | Parkinsonian Disorders - genetics | Genetic Predisposition to Disease | Poly(A)-Binding Proteins - genetics | Cerebellum - metabolism | Brain Stem - diagnostic imaging | Cerebellum - pathology | Whole Genome Sequencing | Magnetic Resonance Imaging | Parkinsonian Disorders - pathology | Pedigree | Aged | High-Throughput Nucleotide Sequencing | Codon, Terminator | Cerebellum | Neuroimaging | Oxidative stress | Poly(A) | Basal ganglia | Nuclear magnetic resonance--NMR | Neurodegenerative diseases | Brain stem | Central nervous system diseases | Genomes | Hybridization | Gene expression | Epidemiology | Proteins | Molecular modelling | Transfection | Magnetic resonance imaging | Neurodegeneration | Autopsy | Ataxia | Localization | Protein interaction | Movement disorders | Index Medicus
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12. Full Text Mutational patterns and regulatory networks in epigenetic subgroups of meningioma
by Paramasivam, Nagarajan and Hübschmann, Daniel and Toprak, Umut H and Ishaque, Naveed and Neidert, Marian and Schrimpf, Daniel and Stichel, Damian and Reuss, David and Sievers, Philipp and Reinhardt, Annekathrin and Wefers, Annika K and Jones, David T. W and Gu, Zuguang and Werner, Johannes and Uhrig, Sebastian and Wirsching, Hans-Georg and Schick, Matthias and Bewerunge-Hudler, Melanie and Beck, Katja and Brehmer, Stephanie and Urbschat, Steffi and Seiz-Rosenhagen, Marcel and Hänggi, Daniel and Herold-Mende, Christel and Ketter, Ralf and Eils, Roland and Ram, Zvi and Pfister, Stefan M and Wick, Wolfgang and Weller, Michael and Grossmann, Rachel and von Deimling, Andreas and Schlesner, Matthias and Sahm, Felix
Acta neuropathologica, ISSN 0001-6322, 8/2019, Volume 138, Issue 2, pp. 295 - 308
Molecular classification | Pathology | Neurosciences | Medicine & Public Health | Mutational signatures | Whole genome sequencing | DNA methylation | NF2 | Meningioma | Clinical Neurology | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | RNA sequencing | Epigenetic inheritance | Medical colleges | Chromatin | RNA | Genomics | Genomes | Genetic transcription | Analysis | Genetic aspects | Nucleotide sequencing | Methylation | DNA sequencing | Breakpoints | Immunoprecipitation | Copy number | Therapeutic applications | Gene regulation | Homologous recombination | Genes | Neurofibromin 2 | Ribonucleic acid--RNA | Genomic instability | Homologous recombination repair | Lysine | Transcription activation | Epigenetics | Mutation | Acetylation | Histone H3 | HOXD gene | Index Medicus
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