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1. Full Text In Vivo "MRI Phenotyping" Reveals Changes in Extracellular Matrix Transport and Vascularization That Mediate VEGF-Driven Increase in Breast Cancer Metastasis
by Pathak, Arvind P and McNutt, Stephen and Shah, Tariq and Wildes, Flonne and Raman, Venu and Bhujwalla, Zaver M
PLoS ONE, ISSN 1932-6203, 05/2013, Volume 8, Issue 5, p. e63146
To gain new insights into the relationship between angiogenic factors in breast cancer and their effect on extracellular matrix (ECM) remodeling and... 
Neoplasm Transplantation | Neoplasm Invasiveness | Humans | Extracellular Matrix - metabolism | Tumor Microenvironment | Lymphatic Metastasis | Breast Neoplasms - blood supply | Breast Neoplasms - metabolism | Neovascularization, Pathologic - pathology | Magnetic Resonance Imaging | Phenotype | Animals | Biological Transport | MCF-7 Cells | Breast Neoplasms - pathology | Mice, Nude | Female | Mice | Neovascularization, Pathologic - metabolism | Vascular Endothelial Growth Factor A - physiology | Magnetic resonance imaging | Analysis | Development and progression | Breast cancer | Diagnosis | Research | Vascular endothelial growth factor | Health aspects
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2. Full Text Brain tumors disrupt the resting-state connectome
by Hadjiabadi, Darian H and Pung, Leland and Zhang, Jiangyang and Ward, B.D and Lim, Woo-Taek and Kalavar, Meghana and Thakor, Nitish V and Biswal, Bharat B and Pathak, Arvind P
NeuroImage: Clinical, ISSN 2213-1582, 2018, Volume 18, pp. 279 - 289
Brain tumor patients often experience functional deficits that extend beyond the tumor site. While resting-state functional MRI (rsfMRI) has been used to map... 
Brain tumor | fMRI | Resting-state | Connectivity | Neurovascular uncoupling | MOUSE-BRAIN | SIGNAL | SPONTANEOUS FLUCTUATIONS | UNDIRECTED GRAPHS | MRI | MAGNETOENCEPHALOGRAPHY | FUNCTIONAL CONNECTIVITY | NETWORKS | NEUROIMAGING | BOLD | Green Fluorescent Proteins - metabolism | Brain - diagnostic imaging | Brain Neoplasms - diagnostic imaging | Humans | Brain Neoplasms - pathology | Green Fluorescent Proteins - genetics | Connectome | Glial Fibrillary Acidic Protein - metabolism | Mice, SCID | Brain Neoplasms - metabolism | Oxygen - blood | Brain - metabolism | Magnetic Resonance Imaging | Rest | Animals | Neural Pathways - diagnostic imaging | Statistics, Nonparametric | Cell Line, Tumor | Mice | Imaging, Three-Dimensional | Disease Models, Animal
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3. Full Text Imaging biomarker roadmap for cancer studies
by O'Connor, James P. B and Aboagye, Eric O and Adams, Judith E and Aerts, Hugo J. W. L and Barrington, Sally F and Beer, Ambros J and Boellaard, Ronald and Bohndiek, Sarah E and Brady, Michael and Brown, Gina and Buckley, David L and Chenevert, Thomas L and Clarke, Laurence P and Collette, Sana and Cook, Gary J and deSouza, Nandita M and Dickson, John C and Dive, Caroline and Evelhoch, Jeffrey L and Faivre-Finn, Corinne and Gallagher, Ferdia A and Gilbert, Fiona J and Gillies, Robert J and Goh, Vicky and Griffiths, John R and Groves, Ashley M and Halligan, Steve and Harris, Aian L and Hawkes, David J and Hoekstra, Otto S and Huang, Erich P and Hutton, Brian F and Jackson, Edward F and Jayson, Gordon C and Jones, Anew and Koh, Dow-Mu and Lacombe, Denis and Lambin, Philippe and Lassau, Nathalie and Leach, Martin O and Lee, Ting-Yim and Leen, Edward L and Lewis, Jason S and Liu, Yan and Lythgoe, Mark F and Manoharan, Prakash and Maxwell, Ross J and Miles, Kenneth A and Morgan, Bruno and Morris, Steve and Ng, Tony and Padhani, Anwar R and Parker, Geoff J. M and Partridge, Mike and Pathak, Arvind P and Peet, Anew C and Punwani, Shonit and Reynolds, Anew R and Robinson, Simon P and Shankar, Lalitha K and Sharma, Ricky A and Soloviev, Dmitry and Stroobants, Sigrid and Sullivan, Daniel C and Taylor, Stuart A and Tofts, Paul S and Tozer, Gillian M and van Herk, Marcel and Walker-Samuel, Simon and Wason, James and Williams, Kaye J and Workman, Paul and Yankeelov, Thomas E and Brindle, Kevin M and McShane, Lisa M and Jackson, Alan and Waterton, John C
Nature reviews. Clinical oncology, ISSN 1759-4774, 2017, Volume 14, Issue 3, pp. 169 - 186
Imaging biomarkers (IBs) are integral to the routine management of patients with cancer. IBs used daily in oncology include clinical TNM stage, objective... 
BREAST-CANCER | CONTRAST-ENHANCED MRI | SURROGATE END-POINTS | COST-EFFECTIVENESS | POSITRON-EMISSION-TOMOGRAPHY | ONCOLOGY | GROUP DEVELOPMENTAL PATHWAY | CLINICAL-TRIALS | HIGH FAMILIAL RISK | PROGNOSTIC-SIGNIFICANCE | PHASE-I | Organotechnetium Compounds | Reproducibility of Results | Folic Acid - analogs & derivatives | Neoplasms - economics | Prognosis | Humans | Neoplasms - diagnosis | Positron-Emission Tomography - methods | Biomarkers, Tumor | Clinical Decision-Making | Cost-Benefit Analysis | Selection Bias | Fluorodeoxyglucose F18 | Research Design - standards | Radiopharmaceuticals | Research | Biological markers | Oncology, Experimental | Cancer
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4. Full Text Abstract 1327: Macromolecular transport, collagen fiber morphology, and metastasis are influenced by the tumor growth location
by Penet, Marie-France and Kakkad, Samata and Pathak, Arvind P and Raman, Venu and Solaiyappan, Meiyappan and Bhujwalla, Zaver M
Cancer Research, ISSN 0008-5472, 04/2012, Volume 72, Issue 8 Supplement, pp. 1327 - 1327
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5. Full Text Tumor Ensemble-Based Modeling and Visualization of Emergent Angiogenic Heterogeneity in Breast Cancer
by Stamatelos, Spyros K and Bhargava, Akanksha and Kim, Eugene and Popel, Aleksander S and Pathak, Arvind P
Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 5276 - 14
There is a critical need for new tools to investigate the spatio-temporal heterogeneity and phenotypic alterations that arise in the tumor microenvironment.... 
STOCHASTIC NETWORKS | VESSEL DIAMETERS | MICROVASCULATURE | MICROENVIRONMENT | DRUG-DELIVERY | ADENOCARCINOMA | MULTIDISCIPLINARY SCIENCES | ARCHITECTURE | OXYGEN-TRANSPORT | BLOOD-FLOW | XENOGRAFTS | Myocardial infarction | Neuroimaging | Cerebral infarction | Computational neuroscience | Breast cancer | Coronary artery disease | Investigations | Angiogenesis | Computer applications | Xenografts | Microvasculature | Mathematical models | Hemodynamics | Oxygenation | Heart diseases | Niches | Tumors
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6. Full Text Abstract 5219: Relationship between intratumoral drug distribution and tumor microenvironment
by Pathak, Arvind P and Donato, Kristin and Benoit, Nicole E and Kato, Yoshinori
Cancer Research, ISSN 0008-5472, 04/2010, Volume 70, Issue 8 Supplement, pp. 5219 - 5219
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7. Full Text Model system takes us a step closer to efficacious imaging biomarkers of angiogenesis in head and neck cancer
by Pathak, Arvind P
Cancer Biology & Therapy, ISSN 1538-4047, 12/2009, Volume 8, Issue 23, pp. 2282 - 2283
Commentary to: Establishment and characterization of patient tumor-derived head and neck squamous cell carcinoma xenografts Mukund Seshadri, Mihai Merzianu,... 
Binding | Proteins | Landes | Calcium | Bioscience | Biology | Cell | Cycle | Cancer | Organogenesis
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8. Full Text A miniature multi-contrast microscope for functional imaging in freely behaving animals
by Senarathna, Janaka and Yu, Hang and Deng, Callie and Zou, Alice L and Issa, John B and Hadjiabadi, Darian H and Gil, Stacy and Wang, Qihong and Tyler, Betty M and Thakor, Nitish V and Pathak, Arvind P
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 99 - 13
Neurovascular coupling, cerebrovascular remodeling and hemodynamic changes are critical to brain function, and dysregulated in neuropathologies such as brain... 
DENDRITIC SPINES | VISUALIZATION | BRAIN ACTIVITY | ANGIOGENESIS | CORTEX | OXYGENATION | MULTIDISCIPLINARY SCIENCES | NEURAL ACTIVITY | DYNAMICS | CEREBRAL-BLOOD-FLOW | FMRI | Neuroimaging - methods | Monitoring, Ambulatory - instrumentation | Animals | Microscopy - instrumentation | Mice, Inbred C57BL | Neuroimaging - instrumentation | Female | Mice | Miniaturization | Mice, SCID | Equipment Design | Brain Neoplasms | Neuroimaging | Brain | Medical imaging | Brain tumors | Brain cancer | EEG | Brain mapping | Fluorescence | Mapping | Blood | Blood flow | Blood volume | Perfusion | Cerebral blood flow | Neural networks | Hemoglobin | Optical communication | Anesthesia | Microvasculature | Hemodynamics | Cancer | Tumors
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9. Full Text Intracellular expression of PAI-1 specific aptamers alters breast cancer cell migration, invasion and angiogenesis
by Fortenberry, Yolanda M and Brandal, Stephanie M and Carpentier, Gilles and Hemani, Malvi and Pathak, Arvind P
PLoS ONE, ISSN 1932-6203, 10/2016, Volume 11, Issue 10, p. e0164288
Plasminogen activator inhibitor-1 (PAI-1) is elevated in various cancers, where it has been shown to effect cell migration and invasion and angiogenesis.... 
CARCINOMA-CELLS | SYSTEM | ADHESION | PROTEIN | MULTIDISCIPLINARY SCIENCES | RNA APTAMERS | IN-VIVO | PLASMINOGEN-ACTIVATOR INHIBITOR-1 | SIRNA | TYPE-1 | TUMOR-GROWTH | Human Umbilical Vein Endothelial Cells | Urokinase-Type Plasminogen Activator - antagonists & inhibitors | Enzyme-Linked Immunosorbent Assay | Cell Survival | Cytokines - analysis | Humans | Aptamers, Nucleotide - metabolism | Vitronectin - metabolism | Cell Adhesion | Breast Neoplasms - metabolism | Aptamers, Nucleotide - genetics | Plasminogen Activator Inhibitor 1 - chemistry | Plasminogen Activator Inhibitor 1 - metabolism | Urokinase-Type Plasminogen Activator - metabolism | Breast Neoplasms - pathology | Cell Line, Tumor | Female | Plasminogen Activator Inhibitor 1 - genetics | Neovascularization, Physiologic | Cell Movement | RNA | Breast cancer | Metastasis | Pediatrics | Ovarian cancer | Cell adhesion & migration | Proteins | Angiogenesis | Urokinase | Conditioning | Contrast media | Deoxyribonucleic acid--DNA | Cytokines | Hematology | Therapeutic applications | Gynecology | Ribonucleic acid--RNA | Endothelial cells | U-Plasminogen activator | Medicine | Inhibitors | Medical prognosis | Plasminogen activator inhibitors | Aptamers | Breast | Angiogenesis inhibitors | Intracellular | Umbilical vein | Cell migration | Cancer | Deoxyribonucleic acid | Ribonucleic acid | DNA
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10. Full Text Three-Dimensional imaging of the mouse neurovasculature with magnetic resonance microscopy
by Pathak, Arvind P and Kim, Eugene and Zhang, Jiangyang and Jones, Melina V
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 7, p. e22643
Knowledge of the three-dimensional (3D) architecture of blood vessels in the brain is crucial because the progression of various neuropathologies ranging from... 
BREAST-CANCER | CEREBRAL BLOOD-VOLUME | MICROENVIRONMENT | VASCULATURE | BIOLOGY | AXONAL PROJECTIONS | MICE | TUMOR ANGIOGENESIS | COMPUTED-TOMOGRAPHY | BRAIN-TUMORS | SYSTEMS BIOLOGY | Microscopy - methods | Brain - diagnostic imaging | Reproducibility of Results | Magnetic Resonance Spectroscopy - methods | Neoplasm Invasiveness | Humans | Brain Neoplasms - pathology | Imaging, Three-Dimensional - methods | Brain Neoplasms - blood supply | X-Ray Microtomography | Neovascularization, Pathologic - pathology | Brain - blood supply | Animals | Brain - pathology | Mice | Disease Models, Animal | CT imaging | Brain tumors | Microscope and microscopy | Neuroimaging | Brain | Animal models | Nuclear magnetic resonance--NMR | Brain cancer | Blood | Angiogenesis | Optical microscopy | Blood volume | Computed tomography | Registration | Rodents | Physiology | Alzheimer's disease | Medical imaging | Neurodegenerative diseases | Architecture | Brain mapping | Blood vessels | Breast cancer | Substantia alba | Medicine | Brain research | Algorithms | Magnetic resonance imaging | Microscopy | Resonance | Tumors | Nuclear magnetic resonance | NMR
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11. Full Text Model system takes us a step closer to efficacious imaging biomarkers of angiogenesis in head and neck cancer
by Pathak, Arvind P
Cancer Biology and Therapy, ISSN 1538-4047, 12/2009, Volume 8, Issue 23, pp. 2284 - 2285
Patient-derived | MRI | Head and neck squamous cell carcinoma (HNSCC) | Vascularization | patient-derived | ONCOLOGY | head and neck squamous cell carcinoma (HNSCC) | vascularization | HYPOXIA | CARCINOMA | Magnetic Resonance Imaging | Phenotype | Animals | Carcinoma, Squamous Cell - pathology | Humans | Tumor Cells, Cultured - transplantation | Transplantation, Heterologous | Head and Neck Neoplasms - pathology
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12. Full Text Structure and function of a prostate cancer dissemination-permissive extracellular matrix
by Penet, Marie-France and Kakkad, Samata and Pathak, Arvind P and Krishnamachary, Balaji and Mironchik, Yelena and Raman, Venu and Solaiyappan, Meiyappan and Bhujwalla, Zaver M
Clinical Cancer Research, ISSN 1078-0432, 05/2017, Volume 23, Issue 9, pp. 2245 - 2254
Purpose: The poor prognosis of metastatic prostate cancer continues to present a major challenge in prostate cancer treatment. The tumor extracellular matrix... 
BREAST-CANCER | INVASION | COLLAGEN | SOLID TUMORS | ONCOLOGY | MAGNETIC-RESONANCE | METASTATIC PROGRESSION | STROMAL CELLS | EXPRESSION | CARCINOMA | TUMOR MICROENVIRONMENT | Prostatic Neoplasms - pathology | Prognosis | Humans | Male | Xenograft Model Antitumor Assays | Magnetic Resonance Imaging | Prostate - pathology | Cancer-Associated Fibroblasts - pathology | Extracellular Matrix - ultrastructure | Neoplasm Metastasis | Animals | Collagen Type I - genetics | Tumor Microenvironment - genetics | Prostate - diagnostic imaging | Prostatic Neoplasms - diagnostic imaging | Mice | Cell Hypoxia - genetics | Second harmonic generation | Macromolecules | Gadolinium | Metastasis | Metastases | Fibers | Magnetic resonance imaging | Microscopy | Experimental design | Collagen | Xenografts | Fibroblasts | Hypoxia | Extracellular matrix | Transport | Acetic acid | Prostate cancer | Prostate | Tumors | Cancer | Structure-function relationships | hypoxia | prostate cancer | macromolecular transport | collagen 1 fibers | cancer associated fibroblasts | extracellular matrix
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13. Full Text Miniaturized optical neuroimaging in unrestrained animals
by Yu, Hang and Senarathna, Janaka and Tyler, Betty M and Thakor, Nitish V and Pathak, Arvind P
NeuroImage, ISSN 1053-8119, 06/2015, Volume 113, pp. 397 - 406
The confluence of technological advances in optics, miniaturized electronic components and the availability of ever increasing and affordable computational... 
Tetherless | Head-mounted | Optical | Imaging | Miniaturized | Unanesthetized | Freely moving | Awake | CELLULAR RESOLUTION | EVOKED ACTIVITY | IMAGING IN-VIVO | 2-PHOTON MICROSCOPE | LASER SPECKLE | NEUROSCIENCES | NEUROIMAGING | AWAKE ANIMALS | FREELY MOVING ANIMALS | MICE | HIGH-SPEED | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | BRAIN | Animals | Contrast Media | Brain - anatomy & histology | Microscopy | Functional Neuroimaging - instrumentation | Rodentia | Brain - pathology | Functional Neuroimaging - methods | Miniaturization | Equipment Design | Stroke (Disease) | Nervous system diseases | Seizures (Medicine) | Medical imaging equipment | Contrast agents | Brain | Neurosciences | Medical imaging | Tomography | Optics | Gene expression | Microscopes | tetherless | freely moving | miniaturized | unanesthetized | imaging | optical
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14. Full Text A bioimage informatics based reconstruction of breast tumor microvasculature with computational blood flow predictions
by Stamatelos, Spyros K and Kim, Eugene and Pathak, Arvind P and Popel, Aleksander S
Microvascular Research, ISSN 0026-2862, 01/2014, Volume 91, pp. 8 - 21
Induction of tumor angiogenesis is among the hallmarks of cancer and a driver of metastatic cascade initiation. Recent advances in high-resolution imaging... 
TOMOGRAPHY | STOCHASTIC NETWORKS | VESSEL DIAMETERS | ANGIOGENESIS | PERIPHERAL VASCULAR DISEASE | MELANOMA XENOGRAFTS | MODEL | PERFUSION CT | STRUCTURAL ADAPTATION | VASCULAR NETWORKS | HEMATOCRIT | Neoplasm Transplantation | Humans | Computational Biology | Neovascularization, Pathologic | Breast Neoplasms - blood supply | Antineoplastic Agents - chemistry | Pressure | X-Ray Microtomography | Algorithms | Animals | Breast Neoplasms - pathology | Mice, Nude | Perfusion | Cell Line, Tumor | Microvessels | Female | Mice | Hemodynamics | Imaging, Three-Dimensional | Angiogenesis Inhibitors - chemistry | Breast cancer | Blood flow
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15. Full Text Quantification and tracking of genetically engineered dendritic cells for studying immunotherapy
: Bioengineering of Reporter for Immunotherapy
by Bar-Shir, Amnon and Alon, Lina and Korrer, Michael J and Lim, Hong Seo and Yadav, Nirbhay N and Kato, Yoshinori and Pathak, Arvind P and Bulte, Jeff W.M and Gilad, Assaf A
Magnetic Resonance in Medicine, ISSN 0740-3194, 02/2018, Volume 79, Issue 2, pp. 1010 - 1019
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