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Cancer Research, ISSN 0008-5472, 08/2015, Volume 75, Issue 15 Supplement, pp. SY44-04 - SY44-04
Journal Article
Molecular & Cellular Proteomics, ISSN 1535-9476, 07/2019, Volume 18, Issue 8 suppl 1, pp. mcp.RA118.001229 - S81
We propose a new method, ProMAP, to characterize regulatory relationships between somatic CNAs and proteins based on proteogenomic data. ProMAP employs a... 
Index Medicus | trans protein | ovarian cancer | cis-regulation | breast cancer | CNA-protein | penalized mixed effect model | Research | CNAI | phosphoproteome | phosphosite hubs | Proteogenomics | phosphosite regulatory map | mass spectrometry | statistics
Journal Article
Nature, ISSN 0028-0836, 05/2016, Volume 534, Issue 7605, pp. 55 - 62
Somatic mutations have been extensively characterized in breast cancer, but the effects of these genetic alterations on the proteomic landscape remain poorly... 
PATHWAYS | HETEROGENEITY | PIK3CA MUTATIONS | PHOSPHORYLATION | MULTIDISCIPLINARY SCIENCES | GENES | BIOLOGY | RECEPTOR | EXPRESSION | SIGNATURE | REVEALS | Protein Kinases - metabolism | Focal Adhesion Kinase 1 - genetics | Receptor, Epidermal Growth Factor - genetics | Protein Kinases - genetics | Cyclin-Dependent Kinases - metabolism | Receptor, ErbB-2 - genetics | Receptors, G-Protein-Coupled - metabolism | Genomics | Humans | Gene Expression Regulation, Neoplastic | Receptor, ErbB-2 - metabolism | Phosphoproteins - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - genetics | Tumor Suppressor Protein p53 - genetics | Breast Neoplasms - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - metabolism | Breast Neoplasms - enzymology | Receptor, Epidermal Growth Factor - metabolism | Phosphoproteins - analysis | Mass Spectrometry | src-Family Kinases - metabolism | Female | Cyclin-Dependent Kinases - genetics | Focal Adhesion Kinase 1 - metabolism | Chromosomes, Human, Pair 5 - genetics | Breast Neoplasms - classification | Chromosome Deletion | p21-Activated Kinases - genetics | Signal Transduction | Molecular Sequence Annotation | Calcium-Binding Proteins - deficiency | Phosphoproteins - genetics | Mutation - genetics | S-Phase Kinase-Associated Proteins - metabolism | p21-Activated Kinases - metabolism | Phosphatidylinositol 3-Kinases - genetics | Breast Neoplasms - genetics | Class I Phosphatidylinositol 3-Kinases | Proteomics | S-Phase Kinase-Associated Proteins - genetics | Receptors, G-Protein-Coupled - genetics | src-Family Kinases - genetics | Calcium-Binding Proteins - genetics | Breast cancer | Genetic aspects | Research | Oncology, Experimental | Cancer | Physiological aspects | Methods | Mutation (Biology) | Proteins | Gene amplification | Peptides | Protein expression | Genomes | Mutation | Kinases | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
Journal Article
Nature Biotechnology, ISSN 1087-0156, 10/2016, Volume 34, Issue 10, pp. 1033 - 1034
An atlas of targeted mass spectrometry coordinates provides a starting point for measuring the unmodified human proteome. 
ASSAYS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CANCER | PROTEOGENOMIC CHARACTERIZATION | MASS-SPECTROMETRY | Methods | Proteomics | Mass spectrometry
Journal Article
Cancer Research, ISSN 0008-5472, 04/2011, Volume 71, Issue 8 Supplement, pp. 229 - 229
Journal Article
Nature Biotechnology, ISSN 1087-0156, 07/2009, Volume 27, Issue 7, pp. 633 - 641
Journal Article
Journal Article
Analytical Chemistry, ISSN 0003-2700, 12/2010, Volume 82, Issue 24, pp. 10116 - 10124
Journal Article
Molecular and Cellular Proteomics, ISSN 1535-9476, 2014, Volume 13, Issue 3, pp. 907 - 917
Journal Article
Clinical Chemistry, ISSN 0009-9147, 01/2016, Volume 62, Issue 1, pp. 48 - 69
Journal Article