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Science, ISSN 0036-8075, 5/2012, Volume 336, Issue 6081, pp. 608 - 611
Phytoplankton blooms characterize temperate ocean margin zones in spring. We investigated the bacterioplankton response to a diatom bloom in the North Sea and... 
Phosphates | Metagenomics | Bacterioplankton | REPORTS | Gammaproteobacteria | Ecological succession | Bacteria | Phytoplankton | Bacteroidetes | Diatoms | Roseobacter | BACTERIAL COMMUNITY | TRANSPORT | CARBON | OCEAN | MULTIDISCIPLINARY SCIENCES | ORGANIC-MATTER | DYNAMICS | DEGRADATION | GAMMAPROTEOBACTERIUM | DIVERSITY | SP NOV | Sulfatases - genetics | Gammaproteobacteria - metabolism | Glycoside Hydrolases - genetics | North Sea | Bacteroidetes - enzymology | Alphaproteobacteria - growth & development | Diatoms - metabolism | Eutrophication | Alphaproteobacteria - enzymology | Phytoplankton - growth & development | Membrane Transport Proteins - genetics | Ecosystem | Phytoplankton - metabolism | Sulfatases - metabolism | Gammaproteobacteria - genetics | Membrane Transport Proteins - metabolism | Membrane Proteins - metabolism | Microbial Interactions | Gammaproteobacteria - enzymology | Seawater - microbiology | Membrane Proteins - genetics | Alphaproteobacteria - metabolism | Bacterial Proteins - genetics | Gammaproteobacteria - growth & development | Diatoms - growth & development | Phosphates - metabolism | Alphaproteobacteria - genetics | Bacteroidetes - metabolism | Bacterial Proteins - metabolism | Bacteroidetes - growth & development | Glycoside Hydrolases - metabolism | Bacteroidetes - genetics | Metagenome | Plankton | Phenetics | Physiological aspects | Environmental aspects | Genetic aspects | Biology | Research | Gene expression | Identification and classification | Marine biology | Microscopy | Algae | Cycles | Uptakes | Scavengers | Marine | Coastal | Carbon | Transporter
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2012, Volume 28, Issue 14, pp. 1823 - 1829
Motivation: In the analysis of homologous sequences, computation of multiple sequence alignments (MSAs) has become a bottleneck. This is especially troublesome... 
DATABASE | SEARCH | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BENCHMARK | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | TIME | Sequence Alignment - methods | Computational Biology - methods | Algorithms | Base Sequence | Genes, rRNA | Software | Databases, Nucleic Acid | RNA, Ribosomal - genetics | Original Papers
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D590 - D596
SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA... 
ARB | SPECIES LIVING TREE | LINEAGES | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESOURCE | Eukaryota - genetics | Bacteria - classification | Archaea - genetics | Genes, rRNA | High-Throughput Nucleotide Sequencing | Software | Internet | Archaea - classification | Bacteria - genetics | Databases, Nucleic Acid
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 12/2007, Volume 35, Issue 21, pp. 7188 - 7196
Sequencing ribosomal RNA (rRNA) genes is currently the method of choice for phylogenetic reconstruction, nucleic acid based detection and quantification of... 
CELLS | PROJECT RDP-II | DESIGN | ACID | MICROBIAL DIVERSITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENES | BIOSPHERE | IDENTIFICATION | 16S | PROBES | Sequence Alignment | Sequence Analysis, RNA | Base Sequence | Databases, Nucleic Acid - standards | Genes, rRNA | Software | Internet | Phylogeny | RNA, Ribosomal - genetics | Quality Control | Computational Biology
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2016, Volume 32, Issue 6, pp. 929 - 931
JSpecies Web Server (JSpeciesWS) is a user-friendly online service for in silico calculating the extent of identity between two genomes, a parameter routinely... 
BACTERIA | ARCHAEA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SYSTEMATICS | BLAST | Computers | Prokaryotic Cells | Internet | Genome | Base Sequence | Genomics | Databases | Mathematical analysis | World Wide Web | Genomes | Nucleotides | Online | Servers (computers) | Bioinformatics | Applications Notes
Journal Article
by Methé, Barbara A and Arumugam, Manimozhiyan and Peplies, Jörg and Hankeln, Wolfgang and Stombaugh, Jesse and Whiteley, Andrew and Amaral-Zettler, Linda and Schloss, Patrick D and Chain, Patrick S G and Kelley, Scott T and Relman, David A and Schriml, Lynn and Sodergren, Erica and DeSantis, Todd and Larsen, Robert and Highlander, Sarah and Field, Dawn and Hunter, Christopher and Booth, Tim and Fierer, Noah and Gonzalez, Antonio and Ludwig, Wolfgang and Jansson, Janet and Proctor, Lita and Spor, Aymé and Newbold, Lindsay K and Karsch-Mizrachi, Ilene and Meyer, Folker and Gordon, Jeffrey I and Park, Joonhong and Wilke, Andreas and Pruesse, Elmar and Tiedje, James M and Kennedy, Jerry and Quast, Christian and Sterk, Peter and Guralnick, Robert and Birren, Bruce W and Morrison, Norman and Gibbs, Richard A and Ley, Ruth E and Wendel, Doug and Wortman, Jennifer R and Buttigieg, Pier Luigi and Bailey, Mark and White, Owen and Johnston, Anjanette and Nakielny, Sara and Koren, Omry and Bushman, Frederic D and Raes, Jeroen and Neufeld, Josh D and Knights, Dan and Bork, Peer and Cole, James R and Petrosino, Joseph and Bonazzi, Vivien and Sinha, Rohini and Hugenholtz, Philip and Baumgartner, Laura and Gevers, Dirk and Kuczynski, Justin and Glöckner, Frank Oliver and Smith, Michelle I and Charlson, Emily and Ravel, Jacques and Yilmaz, Pelin and Kyrpides, Nikos and Nemergut, Diana and Cochrane, Guy and Dawyndt, Peter and Muegge, Brian and Palanisamy, Giriprakash and Maguire, Eamonn and Gilbert, Jack A and Fuhrman, Jed A and Assunta-Sansone, Susanna and Ward, Doyle V and Lozupone, Catherine A and Kottmann, Renzo and Rocca-Serra, Philippe and Costello, Elizabeth K and Blaser, Martin J and Ratnasingham, Sujeevan and Huot-Creasy, Heather and Gallery, Rachel E and Kau, Andrew L and Knight, Rob and Vaughan, Robert and Gil, Inigo San and Weinstock, George M and Lyons, Donna and Oliver, Anna E and Lauber, Christian L and Pace, Norman R and Yatsunenko, Tanya and Nelson, Karen E and Legg, Teresa and Argonne National Lab. (ANL), Argonne, IL (United States)
Nature Biotechnology, ISSN 1087-0156, 05/2011, Volume 29, Issue 5, pp. 415 - 420
Journal Article