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1. Full Text Genome-wide transcription and the implications for genomic organization
by Kapranov, Philipp and Willingham, Aarron T and Gingeras, Thomas R
Nature reviews. Genetics, ISSN 1471-0056, 06/2007, Volume 8, Issue 6, pp. 413 - 423
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Transcription. Transcription factor. Splicing. Rna processing | Molecular and cellular biology | Genetics of eukaryotes. Biological and molecular evolution | Molecular genetics | Promoter Regions, Genetic | Gene Expression | Humans | Signal Transduction - genetics | Genetic Techniques | RNA - genetics | Animals | Genes, Regulator | Transcription, Genetic | Models, Genetic | Genome | Genome, Human | Evolution, Molecular | RNA, Antisense - genetics | Physiological aspects | Molecular evolution | Research | Genetic transcription | Genetic regulation | Index Medicus
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2. Full Text Strategies to Annotate and Characterize Long Noncoding RNAs: Advantages and Pitfalls
by Cao, Huifen and Wahlestedt, Claes and Kapranov, Philipp
Trends in genetics, ISSN 0168-9525, 09/2018, Volume 34, Issue 9, pp. 704 - 721
lncRNAs | integrative approach to lncRNA annotation | challenges to lncRNA annotation | functional annotation of lncRNAs | unique features of lncRNAs | methods to analyze lncRNA function | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Index Medicus
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3. Full Text The Landscape of long noncoding RNA classification
by St. Laurent, Georges and Wahlestedt, Claes and Kapranov, Philipp
Trends in genetics, ISSN 0168-9525, 2015, Volume 31, Issue 5, pp. 239 - 251
Medical Education | systems biology | classification of long non-coding RNAs | lncRNA | transcriptome | lincRNA | vlincRNA | long non-coding RNA | annotation of long non-coding RNAs | function of long non-coding RNAs | LincRNA | VlincRNA | Annotation of long non-coding RNAs | Classification of long non-coding RNAs | Systems biology | Function of long non-coding RNAs | Transcriptome | LncRNA | Long non-coding RNA | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | RNA, Long Noncoding - genetics | Animals | RNA, Long Noncoding - chemistry | RNA, Long Noncoding - classification | Humans | Antisense RNA | Genomics | Cells | Index Medicus
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4. Full Text RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
by Philipp Kapranov and Jill Cheng and Sujit Dike and David A. Nix and Radharani Duttagupta and Aarron T. Willingham and Peter F. Stadler and Jana Hertel and Jörg Hackermüller and Ivo L. Hofacker and Ian Bell and Evelyn Cheung and Jorg Drenkow and Erica Dumais and Sandeep Patel and Gregg Helt and Madhavan Ganesh and Srinka Ghosh and Antonio Piccolboni and Victor Sementchenko and Hari Tammana and Thomas R. Gingeras
Science (American Association for the Advancement of Science), ISSN 0036-8075, 6/2007, Volume 316, Issue 5830, pp. 1484 - 1488
RNA | Exons | Genes | Genomics | Humans | Cell lines | Reports | Genomes | Nucleotides | Cytosol | Nuclear RNA | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Transcription. Transcription factor. Splicing. Rna processing | Molecular and cellular biology | Molecular genetics | Promoter Regions, Genetic | Gene Expression | RNA, Messenger - genetics | Synteny | RNA Precursors - genetics | Terminator Regions, Genetic | RNA, Messenger - metabolism | RNA - genetics | Animals | Cell Nucleus - metabolism | Cell Line, Tumor | Cytosol - metabolism | RNA Precursors - metabolism | Transcription, Genetic | Mice | HeLa Cells | Genome | Genome, Human | RNA - metabolism | Research | Genetic transcription | Proteins | Eukaryotes | Ribonucleic acid--RNA | Ribonucleic acid | Index Medicus
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5. Full Text Editorial: Recent Progresses of Non-coding RNAs in Biological and Medical Research
by Zheng, Yun and Kapranov, Philipp
Frontiers in genetics, ISSN 1664-8021, 02/2020, Volume 11, pp. 187 - 187
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | microRNA | long non-coding RNA (IncRNA) | non-coding RNA | biological research | medical research
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6. Full Text The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
by Kapranov, Philipp and St Laurent, Georges and Raz, Tal and Ozsolak, Fatih and Reynolds, C Patrick and Sorensen, Poul H.B and Reaman, Gregory and Milos, Patrice and Arceci, Robert J and Thompson, John F and Triche, Timothy J
BMC biology, ISSN 1741-7007, 12/2010, Volume 8, Issue 1, pp. 149 - 149
Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Knowledge Bases | Molecular Sequence Annotation - standards | Sarcoma, Ewing - metabolism | Humans | Liver - metabolism | Sarcoma, Ewing - pathology | Molecular Sequence Annotation - trends | Bone Neoplasms - pathology | RNA, Ribosomal - genetics | Genome, Human - genetics | Bone Neoplasms - metabolism | RNA - genetics | Brain - metabolism | RNA, Nuclear - metabolism | Neoplasm Metastasis - genetics | Animals | Adolescent | K562 Cells | Bone Neoplasms - genetics | Genome, Insect | Sequence Analysis, RNA - standards | RNA, Nuclear - genetics | Sarcoma, Ewing - genetics | Drosophila - genetics | RNA sequencing | Methods | Medical research | Pediatrics | Health sciences | Dark matter | Oncology | Genomes | Life sciences | Manuscripts | Cancer | Tumors | Index Medicus
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7. Full Text Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
by Jill Cheng and Philipp Kapranov and Jorg Drenkow and Sujit Dike and Shane Brubaker and Sandeep Patel and Jeffrey Long and David Stern and Hari Tammana and Gregg Helt and Victor Sementchenko and Antonio Piccolboni and Stefan Bekiranov and Dione K. Bailey and Madhavan Ganesh and Srinka Ghosh and Ian Bell and Daniela S. Gerhard and Thomas R. Gingeras
Science (American Association for the Advancement of Science), ISSN 0036-8075, 5/2005, Volume 308, Issue 5725, pp. 1149 - 1154
RNA | Exons | Introns | Genes | Genomics | Cell lines | Genomes | Nucleotides | Chromosomes | Cytosol | Research Article | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Transcription. Transcription factor. Splicing. Rna processing | Molecular and cellular biology | Molecular genetics | DNA, Intergenic | Chromosomes, Human, Pair 13 - genetics | Oligonucleotide Array Sequence Analysis | Humans | Molecular Sequence Data | RNA, Messenger - analysis | Male | Nucleic Acid Amplification Techniques | Chromosomes, Human, Pair 19 - genetics | Chromosomes, Human, Pair 22 - genetics | RNA Splicing | Cell Nucleus - metabolism | Female | Transcription, Genetic | Cell Line | Chromosomes, Human, X - genetics | Physical Chromosome Mapping | Chromosomes, Human - genetics | Computational Biology | Chromosomes, Human, Pair 21 - genetics | Chromosomes, Human, Pair 6 - genetics | Chromosomes, Human, Y - genetics | Cell Line, Tumor | Cytosol - metabolism | Chromosomes, Human, Pair 7 - genetics | Genome, Human | Chromosomes, Human, Pair 14 - genetics | Chromosomes, Human, Pair 20 - genetics | DNA, Complementary | Human chromosomes | Genetic aspects | Research | Genetics | Ribonucleic acid--RNA | Index Medicus
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