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1. Full Text RankAggreg, an R package for weighted rank aggregation
by Pihur, Vasyl and Datta, Susmita and Datta, Somnath
BMC Bioinformatics, ISSN 1471-2105, 02/2009, Volume 10, Issue 1, pp. 62 - 62
Background: Researchers in the field of bioinformatics often face a challenge of combining several ordered lists in a proper and efficient manner. Rank... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PROSTATE-CANCER | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | MICROARRAY EXPERIMENTS | Gene Expression Profiling - methods | Computational Biology - methods | Software | Algorithms | Oligonucleotide Array Sequence Analysis - methods | Cluster Analysis | Usage | Genetic aspects | Research | Applications software | Computational biology | Genetic algorithms | Cancer
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2. Full Text The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals
by Ehret, Georg B and Ferreira, Teresa and Chasman, Daniel I and Jackson, Anne U and Schmidt, Ellen M and Johnson, Toby and Thorleifsson, Gudmar and Luan, Jian'an and Donnelly, Louise A and Kanoni, Stavroula and Petersen, Ann-Kristin and Pihur, Vasyl and Strawbridge, Rona J and Shungin, Dmitry and Hughes, Maria F and Meirelles, Osorio and Kaakinen, Marika and Bouatia-Naji, Nabila and Kristiansson, Kati and Shah, Sonia and Kleber, Marcus E and Guo, Xiuqing and Lyytikäinen, Leo-Pekka and Fava, Cristiano and Eriksson, Niclas and Nolte, Ilja M and Magnusson, Patrik K and Salfati, Elias L and Rallidis, Loukianos S and Theusch, Elizabeth and Smith, Anew J. P and Folkersen, Lasse and Witkowska, Kate and Pers, Tune H and Joehanes, Roby and Kim, Stuart K and Lataniotis, Lazaros and Jansen, Rick and Johnson, Anew D and Warren, Helen and Kim, Young Jin and Zhao, Wei and Wu, Ying and Tayo, Bamidele O and Bochud, Murielle and Absher, Devin and Adair, Linda S and Amin, Najaf and Arking, Dan E and Axelsson, Tomas and Baldassarre, Damiano and Balkau, Beverley and Bandinelli, Stefania and Barnes, Michael R and Barroso, Inês and Bevan, Stephen and Bis, Joshua C and Bjornsdottir, Gyda and Boehnke, Michael and Boerwinkle, Eric and Bonnycastle, Lori L and Boomsma, Dorret I and Bornstein, Stefan R and Brown, Morris J and Burnier, Michel and Cabrera, Claudia P and Chambers, John C and Chang, I.-Shou and Cheng, Ching-Yu and Chines, Peter S and Chung, Ren-Hua and Collins, Francis S and Connell, John M and Döring, Angela and Dallongeville, Jean and Danesh, John and de Faire, Ulf and Delgado, Graciela and Dominiczak, Anna F and Doney, Alex S. F and nos, Fotios and Edkins, Sarah and Eicher, John D and Elosua, Roberto and Enroth, Stefan and Erdmann, Jeanette and Eriksson, Per and Esko, Tonu and Evangelou, Evangelos and Evans, Alun and Fall, Tove and Farrall, Martin and Felix, Janine F and Ferrières, Jean and Ferrucci, Luigi and Fornage, Myriam and Forrester, Terrence and Franceschini, Nora and Franco, Oscar H and Franco-Cereceda, Anders and ... and CHARGE-HF Consortium and Wellcome Trust Case Control Consor and CHARGE-EchoGen Consortium and Wellcome Trust Case Control Consortium and Medicinska fakulteten and Institutionen för folkhälsa och klinisk medicin and Institutionen för odontologi and Enheten för biobanksforskning and Umeå universitet and Medicin
Nature genetics, ISSN 1061-4036, 2016, Volume 48, Issue 10, pp. 1171 - 1184
To dissect the genetic architecture of blood pressure and assess effects on target organ damage, we analyzed 128,272 SNPs from targeted and genome-wide arrays... 
COMMON VARIANTS | METAANALYSIS | SUSCEPTIBILITY | GENETICS & HEREDITY | LOCI | TRAITS | HYPERTENSION | GENOME-WIDE ASSOCIATION | Studies | Consortia | Hypotheses | Genealogy | Genetics | Blood pressure | Genomes | Meta-analysis | Basic Medicine | Medical Genetics | Medicinsk genetik | Medical and Health Sciences | Medicin och hälsovetenskap | Medicinska och farmaceutiska grundvetenskaper
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3. Full Text ClValid: An R package for cluster validation
by Brock, Guy and Pihur, Vasyl and Datta, Susmita and Datta, Somnath
Journal of Statistical Software, ISSN 1548-7660, 2008, Volume 25, Issue 4, pp. 1 - 22
The R package clValid contains functions for validating the results of a clustering analysis. There are three main types of cluster validation measures... 
Validation | Functional categories | Biological annotation | Clustering | Stability measures | R package | stability measures | GENE-EXPRESSION DATA | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | GROWING NEURAL-NETWORK | ANNOTATION | PATTERNS | STATISTICS & PROBABILITY | clustering | biological annotation | validation | MICROARRAY DATA | functional categories
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4. Full Text Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach
by Pihur, Vasyl and Datta, Susmita and Datta, Somnath
Bioinformatics, ISSN 1367-4803, 7/2007, Volume 23, Issue 13, pp. 1607 - 1615
Motivation: Biologists often employ clustering techniques in the explorative phase of microarray data analysis to discover relevant biological groupings. Given... 
GENE-EXPRESSION DATA | STATISTICS & PROBABILITY | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Algorithms | Oligonucleotide Array Sequence Analysis - methods | Artificial Intelligence | Gene Expression Profiling - methods | Entropy | Monte Carlo Method | Pattern Recognition, Automated - methods | Cluster Analysis
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5. Full Text An adaptive optimal ensemble classifier via bagging and rank aggregation with applications to high dimensional data
by Datta, Susmita and Pihur, Vasyl and Datta, Somnath
BMC Bioinformatics, ISSN 1471-2105, 08/2010, Volume 11, Issue 1, pp. 427 - 427
Generally speaking, different classifiers tend to work well for certain types of data and conversely, it is usually not known a priori which algorithm will be... 
Algorithms | Breast Neoplasms - genetics | Prostatic Neoplasms - genetics | Oligonucleotide Array Sequence Analysis | Artificial Intelligence | Computer Simulation | Humans | Sensitivity and Specificity | Female | Male | Usage | Computational biology | Genetic algorithms | Trees | Studies | Competition | Variables | Accuracy | Discriminant analysis | Breast cancer | Mass spectrometry | Manuscripts | Methods
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6. Full Text Gene expression anti-profiles as a basis for accurate universal cancer signatures
by Bravo, Héctor Corrada and Pihur, Vasyl and McCall, Matthew and Irizarry, Rafael A and Leek, Jeffrey T
BMC bioinformatics, ISSN 1471-2105, 10/2012, Volume 13, Issue 1, pp. 272 - 272
Background: Early screening for cancer is arguably one of the greatest public health advances over the last fifty years. However, many cancer screening tests... 
Anti-profiles | Gene expression | Genomic signatures | Cancer | Microarray normalization and quality assessment | MORTALITY | COST-EFFECTIVENESS | QUALITY | PANCREATIC-CANCER | BIOCHEMICAL RESEARCH METHODS | CURVES | BREAST-CANCER | MAMMOGRAPHY | LUNG-CANCER | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | COLORECTAL-CANCER | MATHEMATICAL & COMPUTATIONAL BIOLOGY | BLOOD | Biomarkers, Tumor - blood | Genetic Variation | Colonic Neoplasms - genetics | Prognosis | Area Under Curve | Oligonucleotide Array Sequence Analysis - methods | Genomics | Humans | Colonic Neoplasms - diagnosis | Transcriptome | Gene Expression Profiling - methods | Oncology, Experimental | Genes | Science | Development and progression | Mammography | Research | Computer programs | Colon cancer | Colonoscopy | Genetic aspects | Diagnosis | Hypothesis testing | Ontology | Mortality | Colorectal cancer | Colleges & universities | Statistical methods | Experiments | Accuracy | DNA methylation | Biomarkers | Epigenetics | Colon
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7. Full Text RAPPOR
: Randomized Aggregatable Privacy-Preserving Ordinal Response
by Erlingsson, Úlfar and Pihur, Vasyl and Korolova, Aleksandra
Proceedings of the 2014 ACM SIGSAC Conference on computer and communications security, ISSN 1543-7221, 11/2014, pp. 1054 - 1067
Randomized Aggregatable Privacy-Preserving Ordinal Response, or RAPPOR, is a technology for crowdsourcing statistics from end-user client software,... 
statistical inference | crowdsourcing | cloud computing | privacy protection | population statistics | Computer Science - Cryptography and Security
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8. Full Text Reconstruction of genetic association networks from microarray data: a partial least squares approach
by Pihur, Vasyl and Datta, Somnath and Datta, Susmita
Bioinformatics, ISSN 1367-4803, 2/2008, Volume 24, Issue 4, pp. 561 - 568
Motivation: Gene association/interaction networks provide vast amounts of information about essential processes inside the cell. A complete picture of... 
COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PROTEIN-PROTEIN INTERACTIONS | STATISTICS & PROBABILITY | SACCHAROMYCES-CEREVISIAE | CONFIDENCE | EXPRESSION DATA | Algorithms | Oligonucleotide Array Sequence Analysis | Saccharomyces cerevisiae - genetics | Computer Simulation | Databases, Genetic | Least-Squares Analysis | Genes, Fungal | ROC Curve | Software | Gene Regulatory Networks
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9. Full Text Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure
by Wain, Louise and Verwoert, Germaine and O'Reilly, Paul and Shi, Gang and Johnson, Toby and Bochud, Murielle and Rice, Kenneth and Henneman, Peter and Smith, Albert Vernon and Ehret, Georg and Amin, Najaf and Larson, Martin and Mooser, Vincent and Hadley, David and Dörr, Marcus and Bis, Joshua and Aspelund, Thor and Esko, Tõnu and Janssens, Cécile and Zhao, Jing Hua and Heath, Simon and Laan, Maris and Fu, Jingyuan and Pistis, Giorgio and Luan, J and Lucas, Gavin and Pirastu, Nicola and Pichler, Irene and Jackson, Anne and Webster, Rebecca J and Zhang, F.F and Peden, John and Schmidt, Reinhold and Tanaka, Toshiko and Campbell, Harry and Igl, Wilmar and Milaneschi, Yuri and Hottenga, Jouke Jan and Vitart, Veronique and Chasman, Daniel and Trompet, Stella and Bragg-Gresham, Jennifer L and Alizadeh, Behrooz and Chambers, John and Guo, Xiuqing and Lehtimäki, Terho and Kuhnel, Brigitte and Lopez, L.M and Polasek, Ozren and Boban, Mladen and Nelson, Christopher P and Morrison, Alanna and Pihur, Vasyl and Ganesh, Santhi and Hofman, Albert and Kundu, Suman and Mattace Raso, Francesco and Rivadeneira Ramirez, Fernando and Sijbrands, Eric and Uitterlinden, Ané and Hwang, S.J and Vasan, Ramachanan Srini and Wang, Ying and Bergmann, Sven and Vollenweider, Peter and Waeber, Gérard and Laitinen, Jaana and Pouta, Anneli and Zitting, Paavo and McArdle, Wendy and Kroemer, Heyo and Völker, Uwe and Völzke, Henry and Glazer, Nicole and Taylor, Kent and Harris, Tamara and Alavere, Helene and Haller, Toomas and Keis, Aime and Tammesoo, M.L and Aulchenko, Yurii and Khaw, Kay-Tee and Galan, Pilar and Hercberg, Serge and Lathrop, Mark and Eyheramendy, Susana and Org, Elin and Sõber, Siim and Lu, Xiaowen and Nolte, Ilja and Penninx, Brenda and Corre, Tanguy and Masciullo, Corrado and Sala, Cinzia and Groop, Leif and Voight, Benjamin and Melander, Olle and O'Donnell, Christopher and Salomaa, Veikko and Adamo, Pio and ... and CHARGE Consortium Heart Failure and Cardiogenics Consortium and AortaGen Consortium and LifeLines Cohort Study and EchoGen Consortium and KidneyGen Consortium and CKDGen Consortium and CardioGram and Cardiogenics consortium and KidneyGen consortium and CHARGE Consortium Heart Failure Working Group and EchoGen consortium and CKDGen consortium and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för immunologi, genetik och patologi and Uppsala universitet
Nature Genetics, ISSN 1061-4036, 10/2011, Volume 43, Issue 10, pp. 1005 - 1012
textabstractNumerous genetic loci have been associated with systolic blood pressure (SBP) and diastolic blood pressure (DBP) in Europeans. We now report... 
MORTALITY | CARDIOVASCULAR-DISEASE RISK | METAANALYSIS | GENE | ADRENERGIC-RECEPTOR TRAFFICKING | RELEVANCE | HEART-FAILURE | GENETICS & HEREDITY | MICE | HYPERTENSION | BLOOD-PRESSURE | Genome-Wide Association Study | Follow-Up Studies | Blood Pressure - genetics | Humans | Polymorphism, Single Nucleotide | Genetic Loci | Hypertension - genetics | Case-Control Studies | Arteries - metabolism | Linkage Disequilibrium | Blood pressure | Genetic aspects | Genomes | Research | Gene mutations | Health aspects | Studies | Cardiovascular disease | Genealogy | Meta-analysis | Medical and Health Sciences | Medicin och hälsovetenskap
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10. Full Text Quantifying and modeling birth order effects in autism
by Turner, Tychele and Pihur, Vasyl and Chakravarti, Aravinda
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 10, p. e26418
Autism is a complex genetic disorder with multiple etiologies whose molecular genetic basis is not fully understood. Although a number of rare mutations and... 
MATERNAL AGE | ETIOLOGY | FAMILIES | MULTIDISCIPLINARY SCIENCES | DISORDER | NONVERBAL IQ | IDENTIFICATION | SPONTANEOUS MUTATION | SHANK3 | RESOURCE | TWIN | Autistic Disorder - genetics | Models, Theoretical | Autistic Disorder - physiopathology | Birth Order | Humans | Gene Dosage | Models, Genetic | Mutation | Medicine, Experimental | Medical research | Autism | Genetic aspects | Analysis | Multiplexing | Disease | Data collections | Genomics | Genes | Birth order | Risk | Birth | Etiology | Fibroblasts | Age | Statistical analysis | Abnormalities | Health risks | Births | Data processing | Heredity | Obstetrics | Asthma | Medicine | Studies | Heritability | Health risk assessment | Polygenic inheritance
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11. Full Text Building a RAPPOR with the Unknown: Privacy-Preserving Learning of Associations and Data Dictionaries
by Fanti, Giulia and Pihur, Vasyl and Erlingsson, Úlfar
Proceedings on Privacy Enhancing Technologies, ISSN 2299-0984, 07/2016, Volume 2016, Issue 3, pp. 41 - 61
Techniques based on randomized response enable the collection of potentially sensitive data from clients in a privacy-preserving manner with strong local... 
differential privacy | privacy-preserving analytics
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12. Full Text New genetic loci link adipose and insulin biology to body fat distribution
by Shungin, Dmitry and Winkler, Thomas W and Croteau-Chonka, Damien C and Ferreira, Teresa and Locke, Adam E and Mägi, Reedik and Strawbridge, Rona J and Pers, Tune H and Fischer, Krista and Justice, Anne E and Workalemahu, Tsegaselassie and Wu, Joseph M. W and Buchkovich, Martin L and Heard-Costa, Nancy L and Roman, Tamara S and ng, Alexander W and Song, Ci and Gustafsson, Stefan and Day, Felix R and Esko, Tonu and Fall, Tove and Kutalik, Zoltán and Luan, Jian'an and Randall, Joshua C and Scherag, Ané and Vedantam, Sailaja and Wood, Anew R and Chen, Jin and Fehrmann, Rudolf and Karjalainen, Juha and Kahali, Bratati and Liu, Ching-Ti and Schmidt, Ellen M and Absher, Devin and Amin, Najaf and Anderson, Denise and Beekman, Marian and Bragg-Gresham, Jennifer L and Buyske, Steven and Demirkan, Ayse and Ehret, Georg B and Feitosa, Mary F and Goel, Anuj and Jackson, Anne U and Johnson, Toby and Kleber, Marcus E and Kristiansson, Kati and Mangino, Massimo and Mateo Leach, Irene and Medina-Gomez, Carolina and Palmer, Cameron D and Pasko, Dorota and Pechlivanis, Sonali and Peters, Marjolein J and Prokopenko, Inga and Stančáková, Alena and Ju Sung, Yun and Tanaka, Toshiko and Teumer, Alexander and van Vliet-Ostaptchouk, Jana V and Yengo, Loïc and Zhang, Weihua and Albrecht, Eva and Ärnlöv, Johan and Arscott, Gillian M and Bandinelli, Stefania and Barrett, Amy and Bellis, Claire and Bennett, Amanda J and Berne, Christian and Blüher, Matthias and Böhringer, Stefan and Bonnet, Fabrice and Böttcher, Yvonne and Bruinenberg, Marcel and Carba, Delia B and Caspersen, Ida H and Clarke, Robert and Daw, E. Warwick and Deelen, Joris and Deelman, Ewa and Delgado, Graciela and Doney, Alex S. F and Eklund, Niina and Erdos, Michael R and Estrada, Karol and Eury, Elodie and Frieich, Nele and Garcia, Melissa E and Gieaitis, Vilmantas and Gigante, Bruna and Go, Alan S and Golay, Alain and Grallert, Harald and Grammer, Tanja B and Gräßler, Jürgen and Grewal, Jagvir and Groves, Christopher J and Haller, Toomas and Hallmans, Goran and ... and PAGE Consortium and LifeLines Cohort Study and CARDIOGRAMplusC4D Consortium and MuTHER Consortium and ICBP and ADIPOGEN Consortium and CKDGen Consortium and GEFOS Consortium and Int Endogene Consortium and GENIE Consortium and MAGIC Investigators and ReproGen Consortium and GLGC and ADIPOGen Consortium and International Endogene Consortium and The PAGE Consortium and The International Endogene Consortium and The MAGIC Investigators and The ReproGen Consortium and The CKDGen Consortium and The ADIPOGen Consortium and The ICBP and The CARDIOGRAMplusC4D Consortium and The GENIE Consortium and The GLGC and The GEFOS Consortium and The MuTHER Consortium and The LifeLines Cohort Study and Högskolan Dalarna and Akademin Utbildning, hälsa och samhälle and Medicinsk vetenskap
Nature, ISSN 0028-0836, 2015, Volume 518, Issue 7538, pp. 187 - U378
Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our... 
HUMAN HEIGHT | ABDOMINAL ADIPOSITY | MULTIDISCIPLINARY SCIENCES | COMMON SNPS | SUSCEPTIBILITY LOCI | GLYCEMIC TRAITS | FALSE DISCOVERY | MESENCHYMAL STEM-CELLS | GENOME-WIDE ASSOCIATION | ADIPOGENIC DIFFERENTIATION | SEXUAL-DIMORPHISM | Body Mass Index | Genome-Wide Association Study | Age Factors | Neovascularization, Physiologic - genetics | Epigenesis, Genetic | Humans | Male | Continental Population Groups - genetics | Sex Characteristics | Obesity - genetics | Europe - ethnology | Genome, Human - genetics | Adipose Tissue - metabolism | Insulin - metabolism | Models, Biological | Adipocytes - metabolism | Insulin Resistance - genetics | Polymorphism, Single Nucleotide - genetics | Female | Body Fat Distribution | Transcription, Genetic - genetics | Adipogenesis - genetics | Waist-Hip Ratio | Quantitative Trait Loci - genetics | Adipose tissues | Quantitative trait loci | Genetic research | Genetic aspects | Research | Metabolism | Health aspects | Studies | Body mass index | Genealogy | Body fat | Insulin resistance | Genetics | Genomes | Abdomen | Meta-analysis | Life Sciences | Adipocytes/metabolism Adipogenesis/genetics Adipose Tissue/metabolism Age Factors Body Fat Distribution Body Mass Index Continental Population Groups/genetics Epigenesis, Genetic Europe/ethnology Female Genome, Human/genetics Genome-Wide Association Study Humans Insulin/metabolism Insulin Resistance/genetics Male Models, Biological Neovascularization, Physiologic/genetics Obesity/genetics Polymorphism, Single Nucleotide/genetics Quantitative Trait Loci/genetics Sex Characteristics Transcription, Genetic/genetics Waist-Hip Ratio | Clinical Medicine | Hälsa och välfärd | Medical and Health Sciences | Klinisk medicin | Medicin och hälsovetenskap | Health and Welfare
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