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Journal Article
Nature Methods, ISSN 1548-7091, 06/2017, Volume 14, Issue 7, pp. 687 - 690
We describe sleuth (http://pachterlab.github.io/sleuth), a method for the differential analysis of gene expression data that utilizes bootstrapping in... 
TRANSCRIPTS | BIOCHEMICAL RESEARCH METHODS | MODEL | Software | Models, Biological | Base Sequence | Computer Simulation | Gene Expression - physiology | RNA - genetics | RNA sequencing | Genetic research | Models | Gene expression | Analysis | Data processing | Ribonucleic acid--RNA | Alzheimer's disease | Variance | Index Medicus
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2011, Volume 27, Issue 17, pp. 2325 - 2329
We describe a new 'reference annotation based transcript assembly' problem for RNA-Seq data that involves assembling novel transcripts in the context of an... 
PROJECT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | REVEALS | Algorithms | Animals | Sequence Analysis, RNA | Humans | Molecular Sequence Annotation | RNA, Messenger - chemistry | Gene Expression Profiling | Software | Genome | RNA, Messenger - metabolism | Index Medicus
Journal Article
PLoS ONE, ISSN 1932-6203, 04/2017, Volume 12, Issue 4, pp. e0175744 - e0175744
Journal Article
Nature biotechnology, ISSN 1087-0156, 08/2016, Volume 34, Issue 8, pp. 888 - 888
Journal Article
Genome Biology, ISSN 1474-760X, 04/2013, Volume 14, Issue 4, pp. R36 - R36
TopHat is a popular spliced aligner for RNA-sequence (RNA-seq) experiments. In this paper, we describe TopHat2, which incorporates many significant... 
HUMAN GENOME | RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ULTRAFAST | GENETICS & HEREDITY | PSEUDOGENES | DISCOVERY | READS | Gene Duplication | Sequence Analysis, RNA - methods | Sequence Alignment - methods | Humans | Sensitivity and Specificity | Transcriptome | Gene Fusion | Mutagenesis, Insertional | Software | Index Medicus | Method
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2016, Volume 17, Issue 1, pp. 490 - 490
Journal Article