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1. Full Text Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states
by Pontvianne, Frederic and Blevins, Todd and Chandrasekhara, Chinmayi and Mozgová, Iva and Hassel, Christiane and Pontes, Olga M.F and Tucker, Sarah and Mokroš, Petr and Muchová, Veronika and Fajkus, Jiří and Pikaard, Craig S
Genes and Development, ISSN 0890-9369, 07/2013, Volume 27, Issue 14, pp. 1545 - 1550
Eukaryotes can have thousands of 45S ribosomal RNA ( rRNA) genes, many of which are silenced during development. Using fluorescence-activated sorting... 
Chromatin assembly | Gene silencing | Ribosomal RNA gene | Transcription | DNA methylation | Histone deacetylation | RNA polymerase I | ORGANIZER REGIONS | ARABIDOPSIS-THALIANA | METHYLATION | RDNA | transcription | gene silencing | DEVELOPMENTAL BIOLOGY | DOSAGE CONTROL | CELL BIOLOGY | MAINTENANCE | DOMINANCE | DNA | GENETICS & HEREDITY | histone deacetylation | chromatin assembly | ribosomal RNA gene | CHROMATIN ASSEMBLY FACTOR-1 | Arabidopsis - genetics | Arabidopsis Proteins - genetics | DNA Methylation | Cell Nucleus - metabolism | Cell Nucleolus - metabolism | Epigenesis, Genetic | Gene Expression Regulation, Plant | Gene Silencing | Models, Genetic | Mutation | RNA, Ribosomal - genetics | Ribosomal RNA | Analysis | Research Communication
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2. Nuclear functions in plant transcription, signaling and development
by Pontes, Olga and Jin, Hailing
2015, ISBN 9781493923861
Plant breeding | Effect of stress on | Plant molecular genetics | Crops | Genetic aspects | Plants | Disease and pest resistance
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3. Nuclear Functions in Plant Transcription, Signaling and Development
by Pontes, Olga and Jin, Hailing and SpringerLink (Online service)
2015, ISBN 9781493923861
This book compiles a series of landmark discussions on the recent advances in plant nuclear biology research, and offers new perspectives into the functional... 
Plant breeding | Plant physiology | Life sciences
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4. Full Text Nuclear Functions in Plant Transcription, Signaling and Development
by Olga Pontes Pontes and Hailing Jin Jin and Hailing and Olga
2015, 2015, ISBN 9781493923854, 187
The genome is more than a linear code as depicted by its DNA sequences as several interacting factors play a crucial role in shaping its organization and... 
Biology, life sciences | Plant physiology | Life sciences | Plant breeding | Life Sciences | Plant Physiology | Plant Breeding/Biotechnology | Plant Genetics & Genomics
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5. Full Text An SNF2 Protein Associated with Nuclear RNA Silencing and the Spread of a Silencing Signal between Cells in Arabidopsis
by Lisa M. Smith and Olga Pontes and Iain Searle and Nataliya Yelina and Faridoon K. Yousafzai and Alan J. Herr and Craig S. Pikaard and David C. Baulcombe
The Plant Cell, ISSN 1040-4651, 5/2007, Volume 19, Issue 5, pp. 1507 - 1521
The silencing phenotype in Arabidopsis thaliana lines with an inverted repeat transgene under the control of a phloem-specific promoter was manifested in... 
Proteins | Phenotypes | RNA interference | Double stranded RNA | RNA | DNA | Small interfering RNA | Transgenes | Genetic mutation | Plant cells | ENDOGENOUS SIRNAS | DIRECTED DNA METHYLATION | LONG-DISTANCE | POLYMERASE-IV | BIOCHEMISTRY & MOLECULAR BIOLOGY | TO-CELL | PROCESSING CENTER | PLANT SCIENCES | CELL BIOLOGY | MESSENGER-RNA | INTERFERING RNA | PLANTS | C-ELEGANS | Arabidopsis - enzymology | RNA Replicase - metabolism | Molecular Sequence Data | MicroRNAs - metabolism | Intracellular Signaling Peptides and Proteins - metabolism | Arabidopsis Proteins - metabolism | Cell Nucleus - metabolism | RNA Interference | Plants, Genetically Modified | Gene Expression Regulation, Plant | DNA Polymerase beta - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Genes, Reporter | Protein Structure, Tertiary | Amino Acid Sequence | Arabidopsis Proteins - genetics | Protein Structure, Secondary | Signal Transduction | Arabidopsis - cytology | Mutation - genetics | Subcellular Fractions - metabolism | Arabidopsis - metabolism | Protein Transport | Arabidopsis - genetics | Phenotype | Arabidopsis Proteins - chemistry | Mutagenesis | Intracellular Signaling Peptides and Proteins - chemistry | Models, Biological | Alleles | RNA, Small Interfering - metabolism | Gene silencing | Arabidopsis | Physiological aspects | Genetic aspects | Plant cells and tissues | Research
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6. Full Text A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis
by Weiqiang Qian and Daisuke Miki and Heng Zhang and Yunhua Liu and Xi Zhang and Kai Tang and Yunchao Kan and Honggui La and Xiaojie Li and Shaofang Li and Xiaohong Zhu and Xiaobing Shi and Kangling Zhang and Olga Pontes and Xuemei Chen and Renyi Liu and Zhizhong Gong and Jian-Kang Zhu
Science, ISSN 0036-8075, 6/2012, Volume 336, Issue 6087, pp. 1445 - 1448
Active DNA demethylation is an important part of epigenetic regulation in plants and animals. How active DNA demethylation is regulated and its relationship... 
Phenotypes | DNA | Genes | REPORTS | Histones | Antibodies | Epigenetics | Genetic loci | Gene expression regulation | Methylation | Genetic mutation | TRIMETHYLATION | GLYCOSYLASE/LYASE | MULTIDISCIPLINARY SCIENCES | METHYLATION PATTERNS | PLANTS | ROS1 | GENOME | Protein Structure, Tertiary | Chromatin - metabolism | Arabidopsis Proteins - genetics | Genes, Plant | Histone Acetyltransferases - chemistry | Gene Silencing | Histone Acetyltransferases - genetics | Nuclear Proteins - metabolism | DNA, Plant - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | DNA Methylation | Arabidopsis Proteins - chemistry | Histone Acetyltransferases - metabolism | Acetylation | Histones - metabolism | Mutation | Nuclear Proteins - genetics | Transgenes | DNA Glycosylases - metabolism | Arabidopsis | Transferases | Physiological aspects | Genetic aspects | Research | Health aspects | Plant biology | DNA methylation | Enzymes | Biochemistry | Covalence | Superstructures | Deoxyribonucleic acid | Homology | Loci
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7. Full Text An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
by Zhu, Jian-Kang and Jin, Hailing and Pikaard, Craig S and Liu, Hai-Liang and Lorkovic, Zdravko J and Lagrange, Thierry and Matzke, Antonius J. M and Zhan, Xiangqiang and Matzke, Marjori and Pontes, Olga and Daxinger, Lucia and He, Xinjian and Zhang, Shoudong and Gao, Zhihuan and Pontier, Dominique and Lin, Huixin and Qian, Weiqiang and Xie, Mingtang and Miki, Daisuke
Nature, ISSN 0028-0836, 05/2010, Volume 465, Issue 7294, pp. 106 - 109
DNA methylation is an important epigenetic mark in many eukaryotes. In plants, 24-nucleotide small interfering RNAs (siRNAs) bound to the effector protein,... 
PATHWAYS | ARABIDOPSIS-THALIANA | GLYCOSYLASE/LYASE | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | RESOLUTION | PROCESSING CENTER | PATTERNS | BODIES | BINDING PROTEIN | ARGONAUTE4 | Arabidopsis Proteins - genetics | Methyltransferases - metabolism | RNA Polymerase II - metabolism | DNA-Binding Proteins - genetics | RNA, Plant - metabolism | Arabidopsis - metabolism | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | DNA Methylation | Cell Nucleus - metabolism | Gene Expression Regulation, Plant | Argonaute Proteins | Mutation | Gene Silencing - physiology | Polymerase chain reaction | Proteins | Gene silencing | Gene mutations | Physiological aspects | Genetic aspects | Research | Methylation | DNA methylation | Deoxyribonucleic acid--DNA | Populations and Evolution | Genomics | Biodiversity | Cellular Biology | Life Sciences | Arabidopsis Proteins | Computer Science | Biomolecules | Genetics | Vegetal Biology | Bioinformatics | DNA-Binding Proteins | Plants genetics | RNA, Plant | Arabidopsis | Quantitative Methods | Biochemistry, Molecular Biology | Gene Silencing | Systematics, Phylogenetics and taxonomy | Plant breeding | Methyltransferases | Molecular biology | Molecular Networks | RNA Polymerase II | Cell Nucleus
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8. Full Text ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis
by Zheng, Xianwu and Miki, Daisuke and Zhang, Fei and Zhu, Jian-Kang and Zhu, Jianhua and Li, Wen-Xue and Iida, Kei and Pikaard, Craig S and Kapoor, Avnish and Pontes, Olga
Nature, ISSN 0028-0836, 10/2008, Volume 455, Issue 7217, pp. 1259 - 1262
DNA methylation is an important epigenetic mark for transcriptional gene silencing (TGS) in diverse organisms. Recent studies suggest that the methylation... 
GLYCOSYLASE/LYASE ROS1 | PATHWAYS | REPLICATION | HUMAN-CELLS | MULTIDISCIPLINARY SCIENCES | METHYLATION PATTERNS | PLANTS | TARGETS | MICRORNAS | DEMETER | ABSCISIC-ACID | RNA-Binding Proteins - genetics | Arabidopsis Proteins - genetics | Arabidopsis - cytology | Gene Silencing | Nuclear Proteins - metabolism | DNA-Directed RNA Polymerases - genetics | RNA, Plant - genetics | RNA, Plant - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | DNA Methylation | Cell Nucleus - metabolism | Transcription, Genetic | DNA-Directed RNA Polymerases - metabolism | Nuclear Proteins - genetics | RNA-Binding Proteins - metabolism | Physiological aspects | Genetic aspects | Research | DNA binding proteins | Arabidopsis | Proteins | Genetics | RNA polymerase
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9. Full Text Gateway‐compatible vectors for plant functional genomics and proteomics
by Earley, Keith W and Haag, Jeremy R and Pontes, Olga and Opper, Kristen and Juehne, Tom and Song, Keming and Pikaard, Craig S
The Plant Journal, ISSN 0960-7412, 02/2006, Volume 45, Issue 4, pp. 616 - 629
Summary Gateway cloning technology facilitates high‐throughput cloning of target sequences by making use of the bacteriophage lambda site‐specific... 
recombinational cloning | fusion protein | affinity purification | epitope tag | protein localization | Protein localization | Epitope tag | Fusion protein | Affinity purification | Recombinational cloning | CELLS | ARABIDOPSIS-THALIANA | RNA | AGROBACTERIUM-MEDIATED TRANSFORMATION | PLANT SCIENCES | GENE | CLONING | PROTEIN COMPLEXES | EXPRESSION | Amino Acid Sequence | Chromatography, Affinity | Plants - genetics | Base Sequence | Genomics | Proteomics | Molecular Sequence Data | Recombinant Fusion Proteins - genetics | Genetic Vectors | DNA, Plant | Genetic research
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10. Full Text Chromosomal Locus Rearrangements Are a Rapid Response to Formation of the Allotetraploid Arabidopsis suecica Genome
by Olga Pontes and Nuno Neves and Manuela Silva and Michelle S. Lewis and Andreas Madlung and Luca Comai and Wanda Viegas and Craig S. Pikaard
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2004, Volume 101, Issue 52, pp. 18240 - 18245
Allopolyploidy is a significant evolutionary process, resulting in new species with diploid or greater chromosome complements derived from two or more... 
Genetic transposition | Biological Sciences | Genes | Centromeres | rRNA genes | Genetic loci | Fish | Genomes | Chromosomes | Siblings | Genetic hybridization | Translocation | Plant | Polyploidy | Speciation | POLYPLOID EVOLUTION | translocation | DNA METHYLATION | MULTIDISCIPLINARY SCIENCES | IN-SITU HYBRIDIZATION | ELIMINATION | NUCLEOLUS ORGANIZER REGION | speciation | polyploidy | plant | PLANTS | A-THALIANA | DUPLICATION | RIBOSOMAL-RNA GENE | REPETITIVE DNA | Genes, Plant | In Situ Hybridization, Fluorescence | Genome, Plant | Arabidopsis - metabolism | Arabidopsis - genetics | Chromosomes - ultrastructure | Nucleolus Organizer Region | RNA, Ribosomal, 5S | Centromere | Models, Biological | RNA, Ribosomal | Metaphase | Gene Expression Regulation, Plant | Evolution, Molecular | Allopolyploid | Research
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11. Full Text Posttranscriptional gene silencing in nuclei
by Paul Hoffer and Sergey Ivashuta and Olga Pontes and Alexa Vitins and Craig Pikaard and Andrew Mroczka and Nicholas Wagner and Toni Voelker and David C. Baulcombe
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 1/2011, Volume 108, Issue 1, pp. 409 - 414
In plants, small interfering RNAs (siRNAs) with sequence homology to transcribed regions of genes can guide the sequence-specific degradation of corresponding... 
Untranslated regions | Soybeans | Messenger RNA | Double stranded RNA | RNA | Introns | Genes | Small interfering RNA | Plants | Cytoplasm | Glycine | Suppression | RNA interference | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | EVOLUTION | MESSENGER-RNA | glycine | MIRNA | SEQUENCE | suppression | TRANS-ACTING SIRNAS | BODIES | PLANTS | INSIGHTS | Fatty Acid Desaturases - genetics | RNA, Small Interfering - genetics | Introns - genetics | Ribonuclease III - metabolism | Arabidopsis | Fatty Acid Desaturases - metabolism | RNA Replicase - metabolism | Immunoblotting | Reverse Transcriptase Polymerase Chain Reaction | Arabidopsis Proteins - metabolism | Cell Nucleus - metabolism | RNA Precursors - metabolism | RNA Interference - physiology | Microscopy, Fluorescence | RNA, Small Interfering - metabolism | Gene silencing | Physiological aspects | Genetic transcription | Properties | Cell nuclei | Methods | Biological Sciences
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12. Full Text IDN2 interacts with RPA and facilitates DNA double-strand break repair by homologous recombination in arabidopsis
by Liu, Mingming and Ba, Zhaoqing and Costa-Nunes, Pedro and Wei, Wei and Li, Lanxia and Kong, Fansi and Li, Yan and Chai, Jijie and Pontes, Olga and Qi, Yijun
Plant Cell, ISSN 1040-4651, 03/2017, Volume 29, Issue 3, pp. 589 - 599
Repair of DNA double-strand breaks (DSBs) is critical for the maintenance of genome integrity. We previously showed that DSB-induced small RNAs (diRNAs)... 
DIFFERENT PATHWAYS | METHYLATION | COMPLEX | REPLICATION PROTEIN-A | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT SCIENCES | CELL BIOLOGY | NONCODING RNA | DAMAGE RESPONSE | THALIANA | ROLES | PLANTS | IONIZING-RADIATION | Rad51 Recombinase - metabolism | RNA-Binding Proteins - genetics | Arabidopsis Proteins - genetics | Protein Binding - genetics | Rad51 Recombinase - genetics | DNA Repair - physiology | Replication Protein A - metabolism | DNA Repair - genetics | DNA Breaks, Double-Stranded | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Homologous Recombination - physiology | Replication Protein A - genetics | Homologous Recombination - genetics | RNA-Binding Proteins - metabolism | Protein Binding - physiology | Arabidopsis thaliana | Biotechnology | Ionizing radiation | RNA | DNA | Genomes | Methylation | Protein binding | Genetic aspects | Genetic recombination | Plant cytogenetics | Analysis | Single-stranded DNA | DNA damage | Homologous recombination | Double-stranded RNA | Homology | Replication protein A | Protein A | Double-strand break repair | Ribonucleic acid--RNA | DNA repair | Recruitment | Proteins | Homologous recombination repair | RNA-binding protein | DNA methylation | Replication | Repair | Deoxyribonucleic acid--DNA
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13. Full Text Intersection of Small RNA Pathways in Arabidopsis thaliana Sub-Nuclear Domains
by Pontes, Olga and Vitins, Alexa and Ream, Thomas S and Hong, Evelyn and Pikaard, Craig S and Costa-Nunes, Peo
PLOS ONE, ISSN 1932-6203, 06/2013, Volume 8, Issue 6, p. e65652
In Arabidopsis thaliana, functionally diverse small RNA (smRNA) pathways bring about decreased RNA accumulation of target genes via several different... 
COILED BODIES | METHYLATION | ENDOGENOUS SIRNA | MESSENGER-RNA | GENE | DNA | MULTIDISCIPLINARY SCIENCES | TRANS-ACTING SIRNAS | POLYMERASE-II | PROTEINS | CAJAL BODIES | Ribonuclease III - metabolism | Plants, Genetically Modified - genetics | MicroRNAs - biosynthesis | MicroRNAs - metabolism | DNA Primers - genetics | Blotting, Western | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | RNA, Small Interfering - biosynthesis | Fluorescent Antibody Technique | Coiled Bodies - metabolism | Plant Proteins - metabolism | RNA Interference - physiology | Microscopy, Fluorescence | RNA, Small Interfering - metabolism | Proteins | Arabidopsis thaliana | Biosynthesis | MicroRNA | Analysis | Nuclear structure | RNA-mediated interference | Genes | MiRNA | Biochemistry | Biology | siRNA | Ribonucleic acid--RNA | Nuclei | Mutants | Nucleoli | Specialization | Pathways | DNA methylation | Epigenetics | Nuclei (cytology) | Localization | Immunofluorescence | Deoxyribonucleic acid--DNA | RNA | Ribonucleic acid | Deoxyribonucleic acid
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14. Full Text A autenticidade que legitima: O blog Petiscos e a celebridade de Julia Petit
by Bon, Olga Carolina Pontes
C-Legenda - Revista do Programa de Pós-graduação em Cinema e Audiovisual, ISSN 1519-0617, 12/2014, Issue 31, p. 99
O surgimento da web 2.0 dinamizou os ambientes da Internet, e possibilitou o desenvolvimento de novas ferramentas, transformando e reconfigurando a mídia. O... 
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15. Full Text siRNA and miRNA processing: new functions for Cajal bodies
by Pontes, Olga and Pikaard, Craig S
Current Opinion in Genetics & Development, ISSN 0959-437X, 2008, Volume 18, Issue 2, pp. 197 - 203
In diverse eukaryotes, micro-RNAs (miRNAs) and small interfering RNAs (siRNAs) regulate important processes that include mRNA inactivation, viral defense,... 
Medical Education | NUCLEOLUS | NUCLEAR-BODIES | MICRORNA BIOGENESIS | GENETICS & HEREDITY | PLANTS | MESSENGER-RNA DECAY | HETEROCHROMATIN FORMATION | ARABIDOPSIS | GW182 | MAMMALIAN-CELLS | BODY | CELL BIOLOGY | Coiled Bodies - genetics | RNA, Small Interfering - genetics | Animals | Ribonuclease III - metabolism | Cell Nucleolus - genetics | Humans | Cell Cycle Proteins - metabolism | MicroRNAs - genetics | Proteins | MicroRNA
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