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science & technology (18) 18
life sciences & biomedicine (12) 12
microbiology (11) 11
metagenomics (8) 8
metagenome (7) 7
soil microbiology (7) 7
environmental sciences (6) 6
bacteria (5) 5
life sciences (5) 5
analysis (4) 4
basic biological sciences (4) 4
climate change (4) 4
ecology (4) 4
environmental sciences & ecology (4) 4
genes (4) 4
technology (4) 4
[spi.nrj]engineering sciences [physics]/electric power (3) 3
bacteria - classification (3) 3
bacteria - genetics (3) 3
biodegradation (3) 3
biodiversity (3) 3
corrinoid (3) 3
dehalococcoides (3) 3
ecosystem (3) 3
electric power (3) 3
engineering sciences (3) 3
genetics (3) 3
metatranscriptome (3) 3
multidisciplinary sciences (3) 3
original (3) 3
original article (3) 3
physical sciences (3) 3
reductive dechlorination (3) 3
research (3) 3
rna, ribosomal, 16s - genetics (3) 3
science & technology - other topics (3) 3
veillonellaceae (3) 3
[sde.be]environmental sciences/biodiversity and ecology (2) 2
[sdv.mp]life sciences [q-bio]/microbiology and parasitology (2) 2
[sdv]life sciences [q-bio] (2) 2
arctic regions (2) 2
bacteria - metabolism (2) 2
bayesian networks (2) 2
biodegradation, environmental (2) 2
biodiversity and ecology (2) 2
biological and medical sciences (2) 2
biological sciences (2) 2
biotechnology & applied microbiology (2) 2
cancer (2) 2
carbon (2) 2
chemical sciences (2) 2
chloroflexi - genetics (2) 2
chloroflexi - metabolism (2) 2
classification (2) 2
community structure (2) 2
condensed matter (2) 2
dünnschicht (2) 2
electrochemistry (2) 2
fundamental and applied biological sciences. psychology (2) 2
gene expression (2) 2
gene expression profiling (2) 2
genetic aspects (2) 2
genomes (2) 2
genomics (2) 2
halogenation (2) 2
hydrocarbons (2) 2
materials science (2) 2
metabolism (2) 2
metagenomics - methods (2) 2
microbial ecology (2) 2
microbiology and parasitology (2) 2
microorganisms (2) 2
nitrogen - metabolism (2) 2
permafrost (2) 2
permafrost - microbiology (2) 2
phylogeny (2) 2
physics (2) 2
polar environments (2) 2
polymerase chain reaction (2) 2
réseaux bayésiens (2) 2
réseaux cellulaires (2) 2
science (2) 2
sequence analysis, dna (2) 2
soil (2) 2
soil - chemistry (2) 2
sputtering (2) 2
sputtertechnik (2) 2
studies (2) 2
sélection de variables (2) 2
thin films (2) 2
thin-coatings (2) 2
transcriptome (2) 2
trichloroethylene - metabolism (2) 2
usage (2) 2
zinc oxide (2) 2
zinc-oxide (2) 2
zinkoxid (2) 2
03502, genetics - general (1) 1
03509, genetics - population genetics (1) 1
10060, biochemistry studies - general (1) 1
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1. Full Text Soil-specific limitations for access and analysis of soil microbial communities by metagenomics
by Lombard, Nathalie and Prestat, Emmanuel and van Elsas, Jan Dirk and Simonet, Pascal
FEMS microbiology ecology, ISSN 0168-6496, 10/2011, Volume 78, Issue 1, pp. 31 - 49
SHORT READ DATA | NATURAL GENETIC-TRANSFORMATION | ENVIRONMENTAL-SAMPLES | soil DNA extraction | microbial distribution | soil sampling | POLYMERASE-CHAIN-REACTION | metagenomics | metagenome sequencing | MOLECULAR-WEIGHT DNA | PLASMID DNA | BACTERIAL COMMUNITIES | PROKARYOTIC DIVERSITY | microbial diversity | SPATIAL-DISTRIBUTION | 16S RIBOSOMAL-RNA | Microbial diversity | Metagenomics | Soil sampling | Microbial distribution | Soil DNA extraction | Metagenome sequencing | Life Sciences & Biomedicine | Microbiology | Science & Technology | DNA, Fungal - analysis | Fungi - classification | Soil Microbiology | Metagenomics - methods | Biodiversity | Bacteria - genetics | Fungi - genetics | Sequence Analysis, DNA | Genetic Variation | Bacteria - growth & development | Ecosystem | Soil - chemistry | Bacteria - classification | DNA, Bacterial - analysis | Fungi - growth & development | Deoxyribonucleic acid--DNA | Index Medicus | Life Sciences | Ecology, environment | Environmental Sciences
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2. Full Text Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
by Mason, Olivia U and Scott, Nicole M and Gonzalez, Antonio and Robbins-Pianka, Adam and Bælum, Jacob and Kimbrel, Jeffrey and Bouskill, Nicholas J and Prestat, Emmanuel and Borglin, Sharon and Joyner, Dominique C and Fortney, Julian L and Jurelevicius, Diogo and Stringfellow, William T and Alvarez-Cohen, Lisa and Hazen, Terry C and Knight, Rob and Gilbert, Jack A and Jansson, Janet K and Argonne National Lab. (ANL), Argonne, IL (United States)
The ISME Journal, ISSN 1751-7362, 2014, Volume 8, Issue 7, pp. 1464 - 1475
DWH oil spill | iTag/Metagenomics | microbial community structure | hydrocarbons | sediments | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Petroleum Pollution | Metagenomics | Gene Expression | Nitrogen - metabolism | Seawater - microbiology | Gammaproteobacteria - metabolism | Bacterial Proteins - genetics | Mixed Function Oxygenases - metabolism | Alteromonadaceae - metabolism | Alteromonadaceae - genetics | Polycyclic Aromatic Hydrocarbons - metabolism | Ecosystem | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Bacterial Proteins - metabolism | Gammaproteobacteria - genetics | Gulf of Mexico | Mixed Function Oxygenases - genetics | Carbon Radioisotopes | Index Medicus | ENVIRONMENTAL SCIENCES | BASIC BIOLOGICAL SCIENCES | iTag | Original
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3. Full Text Landscape topography structures the soil microbiome in arctic polygonal tundra
by Taş, Neslihan and Prestat, Emmanuel and Wang, Shi and Wu, Yuxin and Ulrich, Craig and Kneafsey, Timothy and Tringe, Susannah G and Torn, Margaret S and Hubbard, Susan S and Jansson, Janet K and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States) and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Nature communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 777 - 13
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Carbon - metabolism | Bacteria - metabolism | Methane - metabolism | Soil Microbiology | Permafrost - microbiology | Bacteria - genetics | Bacteria - isolation & purification | Microbiota | Climate Change | Arctic Regions | Soil - chemistry | Bacteria - classification | Tundra | Microbiomes | Permafrost | Genomes | Polygons | Microorganisms | Nitrous oxides | Mineralization | Topography | Polar environments | Methanogenesis | Nitrous oxide | Oxidation | Biodegradation | Greenhouse effect | Soil degradation | Arctic environments | Soil structure | Environmental factors | Fluxes | Metabolism | Fermentation | Greenhouse gases | Soils | Environmental degradation | Microbial degradation | Index Medicus | ENVIRONMENTAL SCIENCES | metagenome | polygonal tundra | soil microbiome | greenhouse gas
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4. Full Text Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
by Taş, Neslihan and Prestat, Emmanuel and McFarland, Jack W and Wickland, Kimberley P and Knight, Rob and Berhe, Asmeret Asefaw and Jorgenson, Torre and Waldrop, Mark P and Jansson, Janet K
The ISME Journal, ISSN 1751-7362, 2014, Volume 8, Issue 9, pp. 1904 - 1919
permafrost | boreal forest | metagenomics | microbial community response | wildfire | climate change | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Soil Microbiology | Fires | Alaska | Permafrost - microbiology | Carbon - analysis | Taiga | Biodiversity | Permafrost - chemistry | Metagenome | Index Medicus | Original
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5. Full Text Structure, fluctuation and magnitude of a natural grassland soil metagenome
by Delmont, Tom O and Prestat, Emmanuel and Keegan, Kevin P and Faubladier, Michael and Robe, Patrick and Clark, Ian M and Pelletier, Eric and Hirsch, Penny R and Meyer, Folker and Gilbert, Jack A and Le Paslier, Denis and Simonet, Pascal and Vogel, Timothy M
The ISME Journal, ISSN 1751-7362, 09/2012, Volume 6, Issue 9, pp. 1677 - 1687
functional biodiversity | pyrosequencing | phylogenetic | soil metagenomics | structural biodiversity | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Metagenomics | Climate Change | Soil Microbiology | Bacteria - classification | Bacterial Physiological Phenomena | Biodiversity | Bacteria - genetics | Metagenome | Sequence Analysis, DNA | Cluster Analysis | Index Medicus | Biodiversity and Ecology | Life Sciences | Microbiology and Parasitology | Bacteria | Environmental Sciences | Original
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6. Full Text Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization
by Keravec, Marlène and Mounier, Jérôme and Prestat, Emmanuel and Vallet, Sophie and Jansson, Janet K and Burgaud, Gaëtan and Rosec, Sylvain and Gouriou, Stéphanie and Rault, Gilles and Coton, Emmanuel and Barbier, Georges and Héry-Arnaud, Geneviève and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
SpringerPlus, ISSN 2193-1801, 12/2015, Volume 4, Issue 1, pp. 1 - 8
Anaerobes | Respiratory tract microbiota | Early colonization | Respiratory viruses | Cystic fibrosis | Pseudomonas aeruginosa | Science, general | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Life Sciences | Human health and pathology | early colonization | BASIC BIOLOGICAL SCIENCES | cystic fibrosis | respiratory viruses | anaerobes | respiratory tract microbiota
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7. Full Text Microbial ecology of chlorinated solvent biodegradation
by David, Maude M and Cecillon, Sebastien and Warne, Brett M and Prestat, Emmanuel and Jansson, Janet K and Vogel, Timothy M
Environmental microbiology, ISSN 1462-2912, 12/2015, Volume 17, Issue 12, pp. 4835 - 4850
Life Sciences & Biomedicine | Microbiology | Science & Technology | Biodegradation, Environmental | Microbiota - physiology | Tetrachloroethylene - metabolism | Solvents - metabolism | Dichloroethylenes - metabolism | Phylogeny | Trichloroethylene - metabolism | Water Pollutants, Chemical - metabolism | DNA, Bacterial - genetics | Chloroflexi - genetics | Halogenation | Vinyl Chloride - metabolism | Ethylenes - biosynthesis | RNA, Ribosomal, 16S - genetics | Bromodeoxyuridine - metabolism | Chloroflexi - metabolism | Biodegradation | Metabolites | Hydrogen | Analysis | Nitrification | Bacteria | Vinyl chloride | Index Medicus | Engineering Sciences | Electric power
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8. Full Text Assessment of the deepwater horizon oil spill impact on gulf coast microbial communities
by Lamendella, Regina and Strutt, Steven and Borglin, Sharon and Chakraborty, Romy and Tas, Neslihan and Mason, Olivia U and Hultman, Jenni and Prestat, Emmanuel and Hazen, Terry C and Jansson, Janet K
Frontiers in microbiology, ISSN 1664-302X, 2014, Volume 5, pp. 130 - 130
Oil spill | Hydrocarbons | Metatranscriptomics | Microbial communities | 16S rRNA gene | oil spill | microbial communities | metatranscriptomics
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9. Full Text Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
by Men, Yujie and Yu, Ke and Baelum, Jacob and Gao, Ying and Tremblay, Julien and Prestat, Emmanuel and Stenuit, Ben and Tringe, Susannah G and Jansson, Janet and Zhang, Tong and Alvarez-Cohen, Lisa and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Applied and environmental microbiology, ISSN 0099-2240, 04/2017, Volume 83, Issue 8, p. E03508
Life Sciences & Biomedicine | Microbiology | Biotechnology & Applied Microbiology | Science & Technology | Biodegradation, Environmental | Metagenomics | Bacteria - metabolism | Genome, Bacterial | Veillonellaceae - metabolism | Vitamin B 12 - pharmacology | Gene Expression Profiling | Trichloroethylene - metabolism | Corrinoids - metabolism | Biosynthetic Pathways - genetics | Chloroflexi - drug effects | Chloroflexi - genetics | Veillonellaceae - genetics | Halogenation | Microbial Consortia - drug effects | Microbial Consortia - genetics | Chloroflexi - metabolism | Vitamin B 12 - metabolism | Dechlorination | Usage | Biosynthesis | Research | Microbial colonies | Polymerase chain reaction | Bacteria | Genomes | Genes | Index Medicus | metatranscriptome | reductive dechlorination | Dehalococcoides | Veillonellaceae | corrinoid | metagenome
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