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molecular-weight dna (2) 2
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oil spill (2) 2
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phages (2) 2
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polymerase chain reaction (2) 2
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rare biosphere (2) 2
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1. Full Text Soil-specific limitations for access and analysis of soil microbial communities by metagenomics
by Lombard, Nathalie and Prestat, Emmanuel and van Elsas, Jan Dirk and Simonet, Pascal
FEMS Microbiology Ecology, ISSN 0168-6496, 10/2011, Volume 78, Issue 1, pp. 31 - 49
Abstract Metagenomics approaches represent an important way to acquire information on the microbial communities present in complex environments like soil.... 
soil DNA extraction | microbial distribution | soil sampling | microbial diversity | metagenomics | metagenome sequencing | Microbial diversity | Metagenomics | Soil sampling | Microbial distribution | Soil DNA extraction | Metagenome sequencing | SHORT READ DATA | NATURAL GENETIC-TRANSFORMATION | MICROBIOLOGY | ENVIRONMENTAL-SAMPLES | POLYMERASE-CHAIN-REACTION | MOLECULAR-WEIGHT DNA | PLASMID DNA | BACTERIAL COMMUNITIES | PROKARYOTIC DIVERSITY | SPATIAL-DISTRIBUTION | 16S RIBOSOMAL-RNA | DNA, Fungal - analysis | Fungi - classification | Soil Microbiology | Metagenomics - methods | Biodiversity | Bacteria - genetics | Fungi - genetics | Sequence Analysis, DNA | Genetic Variation | Bacteria - growth & development | Ecosystem | Soil - chemistry | Bacteria - classification | DNA, Bacterial - analysis | Fungi - growth & development | Deoxyribonucleic acid--DNA | Life Sciences | Ecology, environment | Environmental Sciences
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2. Full Text Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
by Mason, Olivia U and Scott, Nicole M and Gonzalez, Antonio and Robbins-Pianka, Adam and Bælum, Jacob and Kimbrel, Jeffrey and Bouskill, Nicholas J and Prestat, Emmanuel and Borglin, Sharon and Joyner, Dominique C and Fortney, Julian L and Jurelevicius, Diogo and Stringfellow, William T and Alvarez-Cohen, Lisa and Hazen, Terry C and Knight, Rob and Gilbert, Jack A and Jansson, Janet K and Argonne National Lab. (ANL), Argonne, IL (United States)
ISME Journal, ISSN 1751-7362, 2014, Volume 8, Issue 7, pp. 1464 - 1475
The Deepwater Horizon (DWH) oil spill in the spring of 2010 resulted in an input of similar to 4.1 million barrels of oil to the Gulf of Mexico; >22% of this... 
DWH oil spill | iTag/Metagenomics | microbial community structure | hydrocarbons | sediments | BACTERIA | METHANE | SEQUENCES | GROWTH | ECOLOGY | MICROBIOLOGY | Petroleum Pollution | Metagenomics | Gene Expression | Nitrogen - metabolism | Seawater - microbiology | Gammaproteobacteria - metabolism | Bacterial Proteins - genetics | Mixed Function Oxygenases - metabolism | Alteromonadaceae - metabolism | Alteromonadaceae - genetics | Polycyclic Aromatic Hydrocarbons - metabolism | Ecosystem | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Bacterial Proteins - metabolism | Gammaproteobacteria - genetics | Gulf of Mexico | Mixed Function Oxygenases - genetics | Carbon Radioisotopes | Index Medicus | ENVIRONMENTAL SCIENCES | BASIC BIOLOGICAL SCIENCES | iTag | Original
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3. Full Text Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
by Taş, Neslihan and Prestat, Emmanuel and McFarland, Jack W and Wickland, Kimberley P and Knight, Rob and Berhe, Asmeret Asefaw and Jorgenson, Torre and Waldrop, Mark P and Jansson, Janet K
ISME Journal, ISSN 1751-7362, 2014, Volume 8, Issue 9, pp. 1904 - 1919
Permafrost soils are large reservoirs of potentially labile carbon (C). Understanding the dynamics of C release from these soils requires us to account for the... 
permafrost | boreal forest | metagenomics | microbial community response | wildfire | climate change | ORGANIC-MATTER | CLIMATE-CHANGE | VULNERABILITY | MICROBIOLOGY | BACTERIAL | SOIL CARBON | ECOLOGY | DIVERSITY | C-13 NMR | ECOSYSTEM | TRANSFORMATIONS | Soil Microbiology | Fires | Alaska | Permafrost - microbiology | Carbon - analysis | Taiga | Biodiversity | Permafrost - chemistry | Metagenome | Original
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4. Full Text Landscape topography structures the soil microbiome in arctic polygonal tundra
by Taş, Neslihan and Prestat, Emmanuel and Wang, Shi and Wu, Yuxin and Ulrich, Craig and Kneafsey, Timothy and Tringe, Susannah G and Torn, Margaret S and Hubbard, Susan S and Jansson, Janet K and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States) and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 777 - 13
In the Arctic, environmental factors governing microbial degradation of soil carbon (C) in active layer and permafrost are poorly understood. Here we... 
GEN. NOV | METHANE-PRODUCING ARCHAEON | PERMAFROST | CARBON | MULTIDISCIPLINARY SCIENCES | METAGENOMES | ACTIVE LAYER | DEGRADATION | ALASKA | COMMUNITIES | THAW | Carbon - metabolism | Bacteria - metabolism | Methane - metabolism | Soil Microbiology | Permafrost - microbiology | Bacteria - genetics | Bacteria - isolation & purification | Microbiota | Climate Change | Arctic Regions | Soil - chemistry | Bacteria - classification | Tundra | Microbiomes | Permafrost | Genomes | Polygons | Microorganisms | Nitrous oxides | Mineralization | Topography | Polar environments | Methanogenesis | Nitrous oxide | Oxidation | Biodegradation | Greenhouse effect | Soil degradation | Arctic environments | Soil structure | Environmental factors | Fluxes | Metabolism | Fermentation | Greenhouse gases | Soils | Environmental degradation | Microbial degradation | ENVIRONMENTAL SCIENCES | metagenome | polygonal tundra | soil microbiome | greenhouse gas
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5. Full Text Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization
by Keravec, Marlène and Mounier, Jérôme and Prestat, Emmanuel and Vallet, Sophie and Jansson, Janet K and Burgaud, Gaëtan and Rosec, Sylvain and Gouriou, Stéphanie and Rault, Gilles and Coton, Emmanuel and Barbier, Georges and Héry-Arnaud, Geneviève and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
SpringerPlus, ISSN 2193-1801, 12/2015, Volume 4, Issue 1, pp. 1 - 8
Pseudomonas aeruginosa plays a major role in cystic fibrosis (CF) progression. Therefore, it is important to understand the initial steps of P. aeruginosa... 
Anaerobes | Respiratory tract microbiota | Early colonization | Respiratory viruses | Cystic fibrosis | Pseudomonas aeruginosa | Science, general | AIRWAY MICROBIOTA | MULTIDISCIPLINARY SCIENCES | COMMUNITIES | VIRUSES | CHILDREN | Life Sciences | Human health and pathology | early colonization | BASIC BIOLOGICAL SCIENCES | cystic fibrosis | respiratory viruses | anaerobes | respiratory tract microbiota
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6. Full Text Structure, fluctuation and magnitude of a natural grassland soil metagenome
by Delmont, Tom O and Prestat, Emmanuel and Keegan, Kevin P and Faubladier, Michael and Robe, Patrick and Clark, Ian M and Pelletier, Eric and Hirsch, Penny R and Meyer, Folker and Gilbert, Jack A and Le Paslier, Denis and Simonet, Pascal and Vogel, Timothy M
ISME Journal, ISSN 1751-7362, 09/2012, Volume 6, Issue 9, pp. 1677 - 1687
The soil ecosystem is critical for human health, affecting aspects of the environment from key agricultural and edaphic parameters to critical influence on... 
functional biodiversity | pyrosequencing | phylogenetic | soil metagenomics | structural biodiversity | WESTERN ENGLISH-CHANNEL | RNA | MICROBIOLOGY | MICROBIAL COMMUNITIES | BACTERIAL DIVERSITY | DNA | GENES | ECOLOGY | Metagenomics | Climate Change | Soil Microbiology | Bacteria - classification | Bacterial Physiological Phenomena | Biodiversity | Bacteria - genetics | Metagenome | Sequence Analysis, DNA | Cluster Analysis | Biodiversity and Ecology | Life Sciences | Microbiology and Parasitology | Bacteria | Environmental Sciences | Original
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7. Full Text Assessment of the deepwater horizon oil spill impact on gulf coast microbial communities
by Lamendella, Regina and Strutt, Steven and Borglin, Sharon and Chakraborty, Romy and Tas, Neslihan and Mason, Olivia U and Hultman, Jenni and Prestat, Emmanuel and Hazen, Terry C and Jansson, Janet K
Frontiers in Microbiology, ISSN 1664-302X, 2014, Volume 5, p. 130
One of the major environmental concerns of the Deepwater Horizon oil spill in the Gulf of Mexico was the ecological impact of the oil that reached shorelines... 
Oil spill | Hydrocarbons | Metatranscriptomics | Microbial communities | 16S rRNA gene | oil spill | microbial communities | metatranscriptomics
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8. Full Text Microbial ecology of chlorinated solvent biodegradation
by David, Maude M and Cecillon, Sebastien and Warne, Brett M and Prestat, Emmanuel and Jansson, Janet K and Vogel, Timothy M
Environmental Microbiology, ISSN 1462-2912, 12/2015, Volume 17, Issue 12, pp. 4835 - 4850
Summary This study focused on the microbial ecology of tetrachloroethene (PCE) degradation to trichloroethene, cis‐1,2‐dichloroethene and vinyl chloride to... 
DEHALOCOCCOIDES SP STRAIN | VINYL-CHLORIDE REDUCTASE | BACTERIA | BROMODEOXYURIDINE IMMUNOCAPTURE | GENOME SEQUENCE | BALTIC SEA SEDIMENTS | COMMUNITY | DECHLORINATION | RNA | PHYLOGENETIC MICROARRAY ANALYSIS | MICROBIOLOGY | Biodegradation, Environmental | Microbiota - physiology | Tetrachloroethylene - metabolism | Solvents - metabolism | Dichloroethylenes - metabolism | Phylogeny | Trichloroethylene - metabolism | Water Pollutants, Chemical - metabolism | DNA, Bacterial - genetics | Chloroflexi - genetics | Halogenation | Vinyl Chloride - metabolism | Ethylenes - biosynthesis | RNA, Ribosomal, 16S - genetics | Bromodeoxyuridine - metabolism | Chloroflexi - metabolism | Biodegradation | Metabolites | Index Medicus | Engineering Sciences | Electric power
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9. Full Text Interactions between snow chemistry, mercury inputs and microbial population dynamics in an arctic snowpack
by Larose, Catherine and Prestat, Emmanuel and Cecillon, Sébastien and Berger, Sibel and Malandain, Cédric and Lyon, Delina and Ferrari, Christophe and Schneider, Dominique and Dommergue, Aurélien and Vogel, Timothy M
PLoS ONE, ISSN 1932-6203, 11/2013, Volume 8, Issue 11, p. e79972
We investigated the interactions between snowpack chemistry, mercury (Hg) contamination and microbial community structure and function in Arctic snow. Snowpack... 
GEN. NOV | SEA-ICE | DIMETHYL SULFIDE | CYANOBACTERIA | CO-INERTIA ANALYSIS | MULTIDISCIPLINARY SCIENCES | BACTERIAL COMMUNITIES | RESISTANCE | DIMETHYLSULFONIOPROPIONATE | DIVERSITY | SULFUR | Sulfur - metabolism | Environmental Monitoring | Nitrogen - metabolism | Mercury - analysis | Nitrogen - analysis | Gene Dosage | Mercury - chemistry | Phylogeny | Snow - chemistry | Sulfur - analysis | RNA, Ribosomal, 16S - chemistry | Nitrogen - chemistry | Arctic Regions | Snow - microbiology | RNA, Ribosomal, 16S - genetics | Microbial Interactions | Water Microbiology | Hydrogen-Ion Concentration | Sulfur - chemistry | Drug resistance in microorganisms | RNA | Analysis | Population biology | Methylmercury | Genetic aspects | rRNA 16S | Communities | Ecosystems | Ordination | Genomics | Genes | Environmental changes | Dimethylmercury | Microorganisms | Polar environments | Bacteria | Sulfur | Speciation | Community structure | Cold | Snowpack | Bioavailability | Metabolism | Meltwater | Contamination | Studies | Chemistry | DNA microarrays | Mercury | Mercury (metal) | Structure-function relationships | Engineering Sciences | Electric power
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10. Full Text Metagenomic mining for microbiologists
by Delmont, Tom O and Malandain, Cedric and Prestat, Emmanuel and Larose, Catherine and Monier, Jean-Michel and Simonet, Pascal and Vogel, Timothy M
ISME Journal, ISSN 1751-7362, 12/2011, Volume 5, Issue 12, pp. 1837 - 1843
Microbial ecologists can now start digging into the accumulating mountains of metagenomic data to uncover the occurrence of functional genes and their... 
community structure | environmental microbiology | metagenomics | RESISTANCE | ECOLOGY | MICROBIOLOGY | DIVERSITY | community function | global ecosystems | Climate Change | Environmental Microbiology | Ecosystem | Metagenomics - methods | Adaptations | Life Sciences | Microbiology and Parasitology | Biodiversity and Ecology | Environmental Sciences
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11. Full Text Abstract 590: A new standardized CD8 and PD-L1 dual assay
by Monville, Florence and Prestat, Emmanuel and Yessaad, Nadia and Villard, Marine and Batista, Luciana and Galon, Jerome and Adam, Julien and Fieschi, Jacques
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 590 - 590
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12. Full Text Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics
by Delmont, Tom O and Eren, A. Murat and Maccario, Lorrie and Prestat, Emmanuel and Esen, Özcan C and Pelletier, Eric and Le Paslier, Denis and Simonet, Pascal and Vogel, Timothy M
Frontiers in Microbiology, ISSN 1664-302X, 2015, Volume 6, p. 358
Despite extensive direct sequencing efforts and advanced analytical tools, reconstructing microbial genomes from soil using metagenomics have been challenging... 
Soil | Metagenomics | Rare biosphere | Environmental genomics | Plasmids | Phages | STRAINS | MICROCOSM ENRICHMENT | BACTERIA | SEQUENCES | RAST SERVER | NATURAL-PRODUCTS | ANTIBIOTIC-RESISTANCE | MICROBIOLOGY | DIVERSITY | COMMUNITIES | REVEALS | Engineering Sciences | Electric power | Enrichment | Soil Microbiology | Functional Networks | Genomics
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13. Full Text Modeling of Phenoxy Acid Herbicide Mineralization and Growth of Microbial Degraders in 15 Soils Monitored by Quantitative Real-Time PCR of the Functional tfdA Gene
by Jacob Bælum and Emmanuel Prestat and Maude M. David and Bjarne W. Strobel and Carsten S. Jacobsen
Applied and Environmental Microbiology, ISSN 0099-2240, 08/2012, Volume 78, Issue 15, pp. 5305 - 5312
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
MCPA | 4-CHLORO-2-METHYLPHENOXYACETIC ACID | MOISTURE-CONTENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | KINETICS | DIOXYGENASE | SUBSTRATE CONCENTRATION | 2,4-D DEGRADATION | 2,4-DICHLOROPHENOXYACETIC ACID | AGRICULTURAL SOIL | MICROBIOLOGY | MECOPROP | 2,4-Dichlorophenoxyacetic Acid - metabolism | 2-Methyl-4-chlorophenoxyacetic Acid - analogs & derivatives | Dioxygenases - genetics | Genes, Bacterial - genetics | Models, Biological | Soil Microbiology | DNA Primers - genetics | Kinetics | Minerals - metabolism | Herbicides - metabolism | Real-Time Polymerase Chain Reaction | 2-Methyl-4-chlorophenoxyacetic Acid - metabolism | Usage | Gene mutations | Analysis | Methyl groups | Linear models (Statistics) | Microbiological synthesis | Research | Chemical properties | Linear regression models | Biodegradation
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14. Full Text Microbial ecology of chlorinated solvent biodegradation
: Microbial ecology of PCE degradation
by David, Maude M and Cecillon, Sebastien and Warne, Brett M and Prestat, Emmanuel and Jansson, Janet K and Vogel, Timothy M
Environmental Microbiology, ISSN 1462-2912, 12/2015, Volume 17, Issue 12, pp. 4835 - 4850
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