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Journal Article
Nature communications, ISSN 2041-1723, 05/2019, Volume 10, Issue 1, pp. 2415 - 1
The original version of this Article contained an error in the author affiliations. Trey Ideker was incorrectly associated with 'Department of Medicine... 
Medicine | DNA methylation | Gene silencing | Chromatin | Methylation | Deoxyribonucleic acid--DNA
Journal Article
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 2188 - 15
Although promoter-associated CpG islands have been established as targets of DNA methylation changes in cancer, previous studies suggest that epigenetic... 
HYPERMETHYLATION | PRIMARY HEAD | MULTIDISCIPLINARY SCIENCES | C-MYC | FRAMEWORK | EPIGENOME | MUTATIONS | EXPRESSION | GENOME | HPV | Enrichment | Gene silencing | Chromatin | DNA methylation | Epigenetics | Myc protein | Mutation | Methylation | Deoxyribonucleic acid--DNA | Tumors | CpG islands | Cancer
Journal Article
PLoS ONE, ISSN 1932-6203, 11/2015, Volume 10, Issue 11, p. e0142487
Background Synchronous tumors can be independent primary tumors or a primary-metastatic (clonal) pair, which may have clinical implications. Mutational... 
HETEROGENEITY | TESTS | METASTASIS | RELATEDNESS | MULTIDISCIPLINARY SCIENCES | DISEASE | COMPARATIVE GENOMIC HYBRIDIZATION | CANCER | PROGRESSION | LESIONS | CARCINOMA IN-SITU | Carcinoma, Ductal, Breast - genetics | Neoplasms, Multiple Primary - genetics | Humans | Neoplasms, Multiple Primary - pathology | Carcinoma, Ductal, Breast - diagnosis | Neoplasm Metastasis - genetics | Breast Neoplasms - genetics | Breast Neoplasms - pathology | DNA Mutational Analysis | Neoplasm Metastasis - pathology | Neoplasm Metastasis - diagnosis | Carcinoma, Ductal, Breast - pathology | Female | Aged | Breast Neoplasms - diagnosis | Clone Cells | High-Throughput Nucleotide Sequencing | Mutation | Breast - pathology | Neoplasms, Multiple Primary - diagnosis | Breast tumors | Gene mutations | Oncology, Experimental | Genetic research | Development and progression | Genetic aspects | Research | Identification and classification | Cancer | Pediatrics | Profiling | Genomics | Colorectal carcinoma | Genomes | Statistical methods | Metastasis | Cancer therapies | Data bases | Metastases | Confidence | DNA fingerprinting | Chromosomes | Deoxyribonucleic acid--DNA | Statistical analysis | Kidneys | Invasiveness | Breast cancer | Gene expression | Statistics | ErbB-2 protein | Studies | Breast | Clear cell-type renal cell carcinoma | Tumors | Deoxyribonucleic acid | DNA
Journal Article
Cancer Research, ISSN 0008-5472, 07/2014, Volume 74, Issue 14, pp. 3753 - 3763
Journal Article
BioMed research international, ISSN 2314-6133, 2018, Volume 2018, pp. 8091283 - 13
For an activating immunotherapy such as adjuvants, a compound that can prolong immune stimulation may enhance efficacy. We leveraged data from two prior high... 
MEDICINE, RESEARCH & EXPERIMENTAL | ACTIVATION | DENDRITIC CELLS | CYTOSKELETON | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BONE-MARROW | KINASE | ANTIPROLIFERATIVE NAPHTHOPYRAN | ANTITUMOR IMMUNITY | SUPPRESSION | NF-KAPPA-B | CROSS-PRESENTATION | Adjuvants, Immunologic - pharmacology | Nitriles - pharmacology | Humans | NF-kappa B - metabolism | Structure-Activity Relationship | Benzopyrans - chemistry | Microtubules - metabolism | Neoplasms - therapy | Tubulin - metabolism | Microtubules - drug effects | Immunotherapy | Benzopyrans - pharmacology | Cytokines - genetics | Cell Line | Cytokines - metabolism | Antibodies, Monoclonal - pharmacology | Mice, Inbred C57BL | Polymerization | Mitochondria - metabolism | Mitochondria - drug effects | Toll-Like Receptor 4 - metabolism | Gene Expression Regulation - drug effects | Animals | Signal Transduction - drug effects | Neoplasms - immunology | Nitriles - chemistry | Survival Analysis | Mitogen-Activated Protein Kinases - metabolism | PD-1 protein | Laboratories | Activation | Malignancy | Kinases | Experiments | Proteins | Depolarization | Depolymerization | Mitochondria | Human papillomavirus | Cell activation | Tubulin | Bone marrow | Tumor necrosis factor-TNF | Neck | Immune system | Antigens | Cytokines | Dendritic cells | Cloning | MAP kinase | Adjuvants | Screens | Chemotherapy | Immune checkpoint | Protein kinase | Cell lines | Head and neck cancer | Interferon | Head & neck cancer | Solid tumors | Colchicine | Chemokines | Cancer | Apoptosis | Tumors
Journal Article
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, ISSN 1055-9965, 06/2019, Volume 28, Issue 9, pp. 1525 - 1533
There is substantial variation in breast cancer survival rates, even among patients with similar clinical and genomic profiles. New biomarkers are needed to... 
Journal Article