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06/2012
Gene expression profiles are some of the most abundant sources of data about the cellular state of a collection of cells in an organism. Comparison of the... 
tumor purification | expression deconvolution | expression evolution | topic models | cancer | gene expression profiling | prognosis prediction | 0715 | probabilistic models | tumor heterogeneity
Dissertation
ISBN 0499222822
Gene expression profiles are some of the most abundant sources of data about the cellular state of a collection of cells in an organism. Comparison of the... 
Computer Science
eBook
Nature, ISSN 0028-0836, 02/2015, Volume 518, Issue 7539, pp. 365 - 369
Journal Article
2007, ISBN 0494274336
A major shortcoming of most available methods for transcription factor binding site (TFBS) discovery is that they produce a high rate of false-positive motifs... 
Biology, Molecular
eBook
The New England Journal of Medicine, ISSN 0028-4793, 09/2015, Volume 373, Issue 10, pp. 895 - 907
Journal Article
Neurosurgery, ISSN 0148-396X, 04/2019
Journal Article
Neurosurgery, ISSN 0148-396X, 02/2019
Journal Article
by Roadmap Epigenomics Consortium, Epigenomics Consortium and Kundaje, Anshul and Meuleman, Wouter and Ernst, Jason and Bilenky, Misha and Yen, Angela and Heravi-Moussavi, Alireza and Kheradpour, Pouya and Zhang, Zhizhuo and Wang, Jianrong and Ziller, Michael J and Amin, Viren and Whitaker, John W and Schultz, Matthew D and Ward, Lucas D and Sarkar, Abhishek and Quon, Gerald and Sandstrom, Richard S and Eaton, Matthew L and Wu, Yi-Chieh and Pfenning, Andreas R and Wang, Xinchen and Claussnitzer, Melina and Liu, Yaping and Coarfa, Cristian and Harris, R. Alan and Shoresh, Noam and Epstein, Charles B and Gjoneska, Elizabeta and Leung, Danny and Xie, Wei and Hawkins, R. David and Lister, Ryan and Hong, Chibo and Gascard, Philippe and Mungall, Andrew J and Moore, Richard and Chuah, Eric and Tam, Angela and Canfield, Theresa K and Hansen, R. Scott and Kaul, Rajinder and Sabo, Peter J and Bansal, Mukul S and Carles, Annaick and Dixon, Jesse R and Farh, Kai-How and Feizi, Soheil and Karlic, Rosa and Kim, Ah-Ram and Kulkarni, Ashwinikumar and Li, Daofeng and Lowdon, Rebecca and Elliott, Ginell and Mercer, Tim R and Neph, Shane J and Onuchic, Vitor and Polak, Paz and Rajagopal, Nisha and Ray, Pradipta and Sallari, Richard C and Siebenthall, Kyle T and Sinnott-Armstrong, Nicholas A and Stevens, Michael and Thurman, Robert E and Wu, Jie and Zhang, Bo and Zhou, Xin and Beaudet, Arthur E and Boyer, Laurie A and De Jager, Philip L and Farnham, Peggy J and Fisher, Susan J and Haussler, David and Jones, Steven J. M and Li, Wei and Marra, Marco A and McManus, Michael T and Sunyaev, Shamil and Thomson, James A and Tlsty, Thea D and Tsai, Li-Huei and Wang, Wei and Waterland, Robert A and Zhang, Michael Q and Chadwick, Lisa H and Bernstein, Bradley E and Costello, Joseph F and Ecker, Joseph R and Hirst, Martin and Meissner, Alexander and Milosavljevic, Aleksandar and Ren, Bing and Stamatoyannopoulos, John A and Wang, Ting and Kellis, Manolis and Roadmap Epigenomics Consortium
Nature, ISSN 0028-0836, 02/2015, Volume 518, Issue 7539, pp. 317 - 329
Journal Article
Neurosurgery, ISSN 0148-396X, 09/2017, Volume 64, Issue CN_suppl_1, pp. 231 - 232
Abstract INTRODUCTION Current standard of care for children with an infratentorial ependymoma includes maximal safe resection with local radiation of 54–59gy.... 
Datasets | Surgery
Journal Article
GENOME BIOLOGY, ISSN 1474-760X, 08/2019, Volume 20, Issue 1, pp. 166 - 166
scRNA-seq dataset integration occurs in different contexts, such as the identification of cell type-specific differences in gene expression across conditions... 
RECONSTRUCTION | Data harmonization | NOISE | FATE | Deep learning | CIRCUITS | ATLAS | scRNA-seq | Alignment | Neural networks | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Data integration | GENETICS & HEREDITY | Domain adaptation | Response to stimulus | EXPRESSION | Batch effects | RNA-SEQUENCING DATA | REVEALS | Index Medicus
Journal Article
Journal Article
Analytical Chemistry, ISSN 0003-2700, 12/2018, Volume 90, Issue 23, pp. 13969 - 13977
Traditional high-throughput drug combination screening requires automatic pipetting of drugs into high-density microtiter plates. Here, a drug-on-pillar... 
CHEMISTRY, ANALYTICAL | THERAPY | ARRAY | MICROARRAY | CELL-CULTURE | INHIBITORS | ALGINATE HYDROGELS | CANCER | CHEMOTHERAPY | Microfluidic Analytical Techniques | Cell Survival - drug effects |