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1. Full Text What’s Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism
by Symmons, Orsolya and Raj, Arjun
Molecular cell, ISSN 1097-2765, 06/2016, Volume 62, Issue 5, pp. 788 - 802
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Genetic Predisposition to Disease | Signal Transduction | Humans | Gene Expression Regulation | Probability | DNA - metabolism | Models, Statistical | RNA - genetics | DNA - genetics | Genetic Variation | Proteins - genetics | Cell Lineage | Phenotype | Animals | Proteins - metabolism | Models, Biological | Single-Cell Analysis - methods | Cell Differentiation | RNA - metabolism | Cells | Index Medicus
Journal Article
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2. Full Text An Image Processing Approach to Detect Obstacles on Road
by K Ganesan, Ramsundar, author and Natesan, Dilip Krishna, author and Raj, Arjun, author and Sekar, Nambiraj, author and Shanmuga Sundaram, Nardhini, author
SAE technical paper series, Volume 2015-26-0006.
Imaging and visualization | Driver Assistance systems | Collision avoidance systems
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3. Full Text Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation
by Levesque, Marshall J and Raj, Arjun
Nature methods, ISSN 1548-7091, 03/2013, Volume 10, Issue 3, pp. 246 - 248
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Chromosomes, Human, Pair 13 - genetics | Translocation, Genetic | Introns - genetics | Humans | RNA, Messenger - genetics | Gene Expression Regulation | In Situ Hybridization, Fluorescence | Chromosome Mapping | Gene Expression Profiling | DNA - genetics | Chromosomes, Human, Pair 19 - genetics | Karyotyping | Transcription, Genetic | Cell Culture Techniques | HeLa Cells | Microscopy, Fluorescence | Physiological aspects | Research | Genetic transcription | Gene expression | Chromosomes | Biotechnology | Protein synthesis | Index Medicus
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4. Full Text Detection of Individual Endogenous RNA Transcripts In Situ Using Multiple Singly Labeled Probes
by Raj, Arjun and Tyagi, Sanjay
2010, ISBN 0123749549, Volume 472
Nucleic Acid Hybridization - methods | Yeasts - genetics | Animals | Microscopy, Fluorescence - methods | Humans | Oligonucleotide Probes - genetics | Chromatography, High Pressure Liquid | Image Processing, Computer-Assisted - methods | Oligonucleotide Probes - chemistry | RNA - chemistry | In Situ Hybridization - methods | RNA - genetics | Index Medicus
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5. Full Text Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?
by Mellis, Ian A and Raj, Arjun
Genome research, ISSN 1088-9051, 10/2015, Volume 25, Issue 10, pp. 1466 - 1472
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Algorithms | Molecular Biology | Models, Biological | Genetic Research | Genomics | Humans | Computational Biology | Systems Biology | Research | Genetic transcription | Molecular biology | Analysis | Genetic algorithms | Index Medicus
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6. Full Text Variability in gene expression underlies incomplete penetrance
by Andersen, Erik and van Oudenaarden, Alexander and Rifkin, Scott A and Raj, Arjun
Nature (London), ISSN 0028-0836, 02/2010, Volume 463, Issue 7283, pp. 913 - 918
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromatin - metabolism | Intestinal Mucosa - metabolism | Caenorhabditis elegans Proteins - metabolism | Gene Expression Regulation, Developmental - genetics | RNA, Messenger - analysis | Chromatin Assembly and Disassembly - genetics | Intestines - embryology | DNA-Binding Proteins - metabolism | Cell Differentiation - genetics | GATA Transcription Factors - metabolism | Stochastic Processes | RNA, Helminth - genetics | Cell Lineage - genetics | Gene Regulatory Networks - genetics | Caenorhabditis elegans - genetics | RNA, Messenger - genetics | In Situ Hybridization, Fluorescence | Penetrance | Transcription Factors - genetics | Caenorhabditis elegans - embryology | DNA-Binding Proteins - genetics | GATA Transcription Factors - genetics | Transcription Factors - metabolism | Animals | RNA, Helminth - analysis | Models, Genetic | Caenorhabditis elegans Proteins - genetics | Chromatin - genetics | Intestines - cytology | Caenorhabditis elegans | Genetic aspects | Research | Gene mutations | Genetic variation | Proteins | Genetics | Gene expression | Embryos | Environmental conditions | Mutations | Networks | Genes | Nematodes | Organisms | Invariants | Index Medicus
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7. Full Text Single-molecule approaches to stochastic gene expression
by Raj, Arjun and Van Oudenaarden, Alexander
Annual review of biophysics, ISSN 1936-122X, 2009, Volume 38, Issue 1, pp. 255 - 270
Gene expression noise | Single-molecule mRNA protein | Molecular Probe Techniques | Stochastic Processes | Gene Expression - genetics | Computer Simulation | Gene Expression Profiling - methods | Genetic Variation - genetics | Models, Genetic | Models, Statistical | Proteins | Physiological aspects | Messenger RNA | Research | Gene expression | Molecular biology | Index Medicus | random | single cell | noisy gene expression | single protein | molecular counting | protein | gene expression noise | mRNA | single mRNA | cell-to-cell variability
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8. Illuminating Genomic Dark Matter with RNA Imaging
by Raj, Arjun and Rinn, John L
Cold Spring Harbor perspectives in biology, ISSN 1943-0264, 05/2019, Volume 11, Issue 5
Life Sciences & Biomedicine | Science & Technology | Cell Biology | Dark matter | Imaging | Light | Fluorescence in situ hybridization | Imaging techniques | Fluorescence | Genomes | Hybridization | Ribonucleic acid--RNA | Localization
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9. Full Text Imaging individual mRNA molecules using multiple singly labeled probes
by Tyagi, Sanjay and Raj, Arjun and Rifkin, Scott A and van Oudenaarden, Alexander and van den Bogaard, Patrick
Nature methods, ISSN 1548-7091, 10/2008, Volume 5, Issue 10, pp. 877 - 879
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Molecular Probes | Animals | Caenorhabditis elegans - genetics | RNA, Messenger - genetics | In Situ Hybridization, Fluorescence | RNA, Messenger - chemistry | Mammals | Drosophila melanogaster - genetics | Usage | Messenger RNA | Research | Gene expression | Analysis | Fluorescence microscopy | Fluorescence | Cellular biology | Microscopy | Molecular biology | Ribonucleic acid--RNA | Research methodology | Index Medicus
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10. Full Text Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
by Cabili, Moran N and Dunagin, Margaret C and McClanahan, Patrick D and Biaesch, Andrew and Padovan-Merhar, Olivia and Regev, Aviv and Rinn, John L and Raj, Arjun
Genome Biology, ISSN 1474-7596, 01/2015, Volume 16, Issue 1, pp. 20 - 20
Mitosis | Humans | Gene Expression Regulation | In Situ Hybridization, Fluorescence | Male | RNA, Long Noncoding - genetics | RNA, Messenger - metabolism | Animals | Cell Nucleus - metabolism | RNA Transport - genetics | Transcription, Genetic | Mice | HeLa Cells | Single-Cell Analysis | RNA, Long Noncoding - metabolism | Studies | Hypotheses | Cell cycle | Epigenetics | Genomes | Hybridization | Gene expression | Localization | Index Medicus | Research
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11. Full Text SAVER: Gene expression recovery for single-cell RNA sequencing
by Huang, Mo and Wang, Jingshu and Torre, Eduardo and Dueck, Hannah and Shaffer, Sydney and Bonasio, Roberto and Murray, John I and Raj, Arjun and Li, Mingyao and Zhang, Nancy R
Nature methods, ISSN 1548-7091, 07/2018, Volume 15, Issue 7, pp. 539 - 542
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Sequence Analysis, RNA - methods | Animals | Single-Cell Analysis - methods | Base Sequence | Humans | Gene Expression Profiling - methods | Mice | Software | High-Throughput Nucleotide Sequencing