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Bioinformatics, ISSN 1367-4803, 06/2015, Volume 31, Issue 12, pp. 2038 - 2039
A Summary: The design of genetic markers is of particular relevance in crop breeding programs. Despite many economically important crops being polyploid... 
BIOINFORMATICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SOFTWARE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Triticum - genetics | Polyploidy | Polymorphism, Single Nucleotide - genetics | DNA Primers - genetics | Software | Genetic Markers | Sequence Analysis, DNA - methods | Applications Notes
Journal Article
Frontiers in Plant Science, ISSN 1664-462X, 10/2019, Volume 10
Polyploidization has played an important role in plant evolution. However, upon polyploidization, the process of meiosis must adapt to ensure the proper... 
Evolution | Plants | Genes | Genomics | co-expression | polyploidization | wheat | hexaploid | meiosis | network
Journal Article
by Appels, Rudi and Appels, Rudi and Eversole, Kellye and Eversole, Kellye and Feuillet, Catherine and Keller, Beat and Rogers, Jane and Rogers, Jane and Stein, Nils and Stein, Nils and Pozniak, Curtis J and Stein, Nils and Choulet, Frédéric and Choulet, Frédéric and Eversole, Kellye and Distelfeld, Assaf and Rogers, Jane and Poland, Jesse and Ronen, Gil and Sharpe, Andrew G and Barad, Omer and Baruch, Kobi and Stein, Nils and Keeble-Gagnère, Gabriel and Barad, Omer and Choulet, Frédéric and Mascher, Martin and Keeble-Gagnère, Gabriel and Ben-Zvi, Gil and Josselin, Ambre-Aurore and Sharpe, Andrew G and Himmelbach, Axel and Ben-Zvi, Gil and Stein, Nils and Balfourier, François and Gutierrez-Gonzalez, Juan and Rogers, Jane and Balfourier, François and Hayden, Matthew and Gutierrez-Gonzalez, Juan and Koh, Chu Shin and Muehlbauer, Gary and Josselin, Ambre-Aurore and Pasam, Raj K and Koh, ChuShin and Muehlbauer, Gary and Paux, Etienne and Pasam, Raj K and Rigault, Philippe and Tibbits, Josquin and Pozniak, Curtis J and Tiwari, Vijay and Sharpe, Andrew G and Spannagl, Manuel and Tibbits, Josquin and Lang, Daniel and Rogers, Jane and Gundlach, Heidrun and Choulet, Frédéric and Haberer, Georg and Lang, Daniel and Mayer, Klaus F. X and Gundlach, Heidrun and Ormanbekova, Danara and Keeble-Gagnère, Gabriel and Prade, Verena and Mayer, Klaus F X and Paux, Etienne and Wicker, Thomas and Swarbreck, David and Prade, Verena and Šimková, Hana and Rimbert, Hélène and Felder, Marius and Wicker, Thomas and Swarbreck, David and Guilhot, Nicolas and Kaithakottil, Gemy and Rimbert, Hélène and Keilwagen, Jens and Felder, Marius and Guilhot, Nicolas and Leroy, Philippe and Lux, Thomas and Kaithakottil, Gemy and Twardziok, Sven and Lang, Daniel and Venturini, Luca and Leroy, Philippe and Juhasz, Angela and Lux, Thomas and Twardziok, Sven and Abrouk, Michael and Fischer, Iris and Appels, Rudi and Juhász, Angéla and Uauy, Cristobal and Borrill, Philippa and Appels, Rudi and Fischer, Iris and ... and RefSeq Genome Structure Gene and Recombination Anal and 1B BAC Sequencing Assembly and Transposable Elements and WAK Gene Family and Flowering Iocus C FLC Gene Team and Genome Size Anal and 2AS Phys Mapping and Optical Mapping and Prolamin Gene Family and 4A Phys Mapping BAC Sequencing Ass and Whole-genome Sequencing Assembly and Subgenome Comparative Anal and IWGSC Whole-Genome Assembly Prin and BAC Chromosome MTP IWGSC-Bayer W and 7DS BAC Sequencing Assembly and Manual Gene Curation and Chromosome LTC Mapping Phys Map and PPR Gene Family and 6B BAC Sequencing Assembly and Hi-C Data-based Scaffolding and BAC Libraries Chromosome Sorting and NLR Gene Family and Manuscript Writing Team and 3AL Phys Mapping and 2B 2D 4B 5BL 5DL IWGSC Bayer Wh and Phys Maps BAC-based Sequences 1A and IWGSC Sequence Data Repository and CBF Gene Family and 7A Phys Mapping BAC Sequencing and 3DL BAC Sequencing Assembly and Automated Annotation and Whole-genome Assembly Quality and Dehydrin Gene Family and Whole-genome Methylome and RH Mapping and Transcriptome Anal RNA-seq Data and Pseudomolecule Assembly and Stem Solidness SSt1 QTL Team and Figures and 3DS Phys Mapping BAC and 7B Phys Mapping BAC Sequencing and Genetic Maps Mapping and 5BS BAC Sequencing Assembly and MicroRNA tRNa Annotation and 2AL Phys Mapping and Gene Family Anal and BAC Pooling BAC Lib Repository and 1D 4D 6D Phys Mapping and IWGSC RefSeq Principal and IWGSC and Phylogenomic Anal and 7DL Phys Mapping BAC Sequencing and Histone Mark Anal and Transposable elements and IWGSC whole-genome assembly principal investigators and CBF gene family and 1D, 4D, and 6D physical mapping and Physical maps and BAC-based sequences and 7DS BAC sequencing and assembly and Manuscript writing team and Dehydrin gene family and 7DL physical mapping and BAC sequencing and MicroRNA and tRNA annotation and 1A BAC sequencing and assembly and PPR gene family and Phylogenomic analyses and Automated annotation and Optical mapping and 5BS BAC sequencing and assembly and 7A physical mapping and BAC sequencing and 6B BAC sequencing and assembly and International Wheat Genome Sequencing Consortium (IWGSC) and 4A physical mapping, BAC sequencing, assembly, and annotation and Subgenome comparative analyses and Whole-genome sequencing and assembly and Recombination analyses and RefSeq genome structure and gene analyses and 2AS physical mapping and Whole-genome methylome and Genome size analysis and 2AL physical mapping and IWGSC RefSeq principal investigators and Transcriptome analyses and RNA-seq data and Genetic maps and mapping and Manual gene curation and 3DL BAC sequencing and assembly and BAC pooling, BAC library repository, and access and Histone mark analyses and WAK gene family and Pseudomolecule assembly and BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags and BAC libraries and chromosome sorting and Prolamin gene family and IWGSC sequence and data repository and access and 1B BAC sequencing and assembly and Flowering locus C (FLC) gene team and RH mapping and Gene family analyses and Chromosome LTC mapping and physical mapping quality control and Whole-genome assembly quality control and analyses and 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps and 3DS physical mapping and BAC sequencing and assembly and 3AL physical mapping and NLR gene family and Hi-C data-based scaffolding and 7B physical mapping, BAC sequencing, and assembly and Stem solidness (SSt1) QTL team and The International Wheat Genome Sequencing Consortium (IWGSC)
Science, ISSN 0036-8075, 08/2018, Volume 361, Issue 6403, pp. 661 - 661
Journal Article
Journal Article
by Lukaszewski, Adam J and Alberti, Adriana and Sharpe, Andrew and Kilian, Andrzej and Stanca, Antonio Michele and Keller, Beat and Clavijo, Bernardo J and Friebe, Bernd and Gill, Bikram and Wulff, Brande and Chapman, Brett and Steuernagel, Burkhard and Feuillet, Catherine and Viseux, Claire and Pozniak, Curtis and Rokhsar, Daniel S and Klassen, Darrin and Edwards, David and Akhunov, Eduard and Paux, Etienne and Alfama, Françoise and Choulet, Frédéric and Kobayashi, Fuminori and Muehlbauer, Gary J and Quesneville, Hadi and Šimková, Hana and Rimbert, Hélène and Gundlach, Heidrun and Budak, Hikmet and Sakai, Hiroaki and Handa, Hirokazu and Kanamori, Hiroyuki and Batley, Jacqueline and Vrána, Jan and Rogers, Jane and Číhalíková, Jarmila and Doležel, Jaroslav and Chapman, Jarrod and Poland, Jesse A and Wu, Jianzhong and Khurana, Jitendra and Wright, Jonathan and Bader, Kai Christian and Eversole, Kellye and Barry, Kerrie and McLay, Kirsten and Mayer, Klaus F. X and Singh, Kuldeep and Clissold, Leah and Pingault, Lise and Couderc, Loïc and Cattivelli, Luigi and Spannagl, Manuel and Kubaláková, Marie and Caccamo, Mario and Mascher, Martin and Bellgard, Matthew and Pfeifer, Matthias and Zytnicki, Matthias and Febrer, Melanie and Alaux, Michael and Martis, Mihaela M and Loaec, Mikaël and Colaiacovo, Moreno and Singh, Nagendra K and Glover, Natasha and Guilhot, Nicolas and Stein, Nils and Olsen, Odd-Arne and Maclachlan, P. Ron and Chhuneja, Parveen and Wincker, Patrick and Sourdille, Pierre and Faccioli, Primetta and Ramirez-Gonzalez, Ricardo H and Waugh, Robbie and Šperková, Romana and Knox, Ron and Appels, Rudi and Sharma, Sapna and Ayling, Sarah and Praud, Sebastien and Wang, Shichen and Lien, Sigbjørn and Sandve, Simen Rød and Matsumoto, Takashi and Endo, Takashi R and Itoh, Takeshi and Nussbaumer, Thomas and Wicker, Thomas and Tanaka, Tsuyoshi and Scholz, Uwe and Barbe, Valérie and Jamilloux, Véronique and Ogihara, Yasunari and Dubská, Zdeňka and International Wheat Genome Sequencing Consortium (IWGSC) and IWGSC and The International Wheat Genome Sequencing Consortium (IWGSC)
Science, ISSN 0036-8075, 2014, Volume 345, Issue 6194, pp. 1251788 - 1251788
Journal Article
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2017, Volume 114, Issue 6, pp. E913 - E921
Comprehensive reverse genetic resources, which have been key to understanding gene function in diploid model organisms, are missing in many polyploid crops.... 
Exome capture | Mutations | Polyploidy | Wheat | Reverse genetics | exome capture | reverse genetics | TRANSCRIPTOME | HEXAPLOID WHEAT | MULTIDISCIPLINARY SCIENCES | GENOME | INDUCED MUTATIONS | mutations | polyploidy | RESISTANT STARCH | RNA-SEQ | GENES | wheat | GENERATION | REGISTRATION | EFFICIENT | Genetic aspects | Observations | Genetic variation | Biological Sciences | PNAS Plus
Journal Article
by Marcussen, Thomas and Sandve, Simen R and Heier, Lise and Spannagl, Manuel and Pfeifer, Matthias and Jakobsen, Kjetill S and Wulff, Brande B.H and Steuernagel, Burkhard and Mayer, Klaus F.X and Olsen, Odd-Arne and Rogers, Jane and Doležel, Jaroslav and Pozniak, Curtis and Eversole, Kellye and Feuillet, Catherine and Gill, Bikram and Friebe, Bernd and Lukaszewski, Adam J and Sourdille, Pierre and Endo, Takashi R and Kubaláková, Marie and Šíhalíková, Jarmila and Dubská, Zdeňka and Vrána, Jan and Šperková, Romana and Šimková, Hana and Febrer, Melanie and Clissold, Leah and McLay, Kirsten and Singh, Kuldeep and Chhuneja, Parveen and Singh, Nagendra K and Khurana, Jitendra and Akhunov, Eduard and Choulet, Frédéric and Alberti, Adriana and Barbe, Valérie and Wincker, Patrick and Kanamori, Hiroyuki and Kobayashi, Fuminori and Itoh, Takeshi and Matsumoto, Takashi and Sakai, Hiroaki and Tanaka, Tsuyoshi and Wu, Jianzhong and Ogihara, Yasunari and Handa, Hirokazu and Maclachlan, P. Ron and Sharpe, Andrew and Klassen, Darrin and Edwards, David and Batley, Jacqueline and Sandve, Simen Rød and Lien, Sigbjørn and Wulff, Brande and Caccamo, Mario and Ayling, Sarah and Ramirez-Gonzalez, Ricardo H and Clavijo, Bernardo J and Wright, Jonathan and Martis, Mihaela M and Mascher, Martin and Chapman, Jarrod and Poland, Jesse A and Scholz, Uwe and Barry, Kerrie and Waugh, Robbie and Rokhsar, Daniel S and Muehlbauer, Gary J and Stein, Nils and Gundlach, Heidrun and Zytnicki, Matthias and Jamilloux, Véronique and Quesneville, Hadi and Wicker, Thomas and Faccioli, Primetta and Colaiacovo, Moreno and Stanca, Antonio Michele and Budak, Hikmet and Cattivelli, Luigi and Glover, Natasha and Pingault, Lise and Paux, Etienne and Sharma, Sapna and Appels, Rudi and Bellgard, Matthew and Chapman, Brett and Nussbaumer, Thomas and Bader, Kai Christian and Rimbert, Hélène and Wang, Shichen and Knox, Ron and Kilian, Andrzej and Alaux, Michael and Alfama, Françoise and Couderc, Loïc and Guilhot, Nicolas and Viseux, Claire and Loaec, Mikaël and Keller, Beat and ... and Int Wheat Genome Sequencing and International Wheat Genome Sequencing Consortium and The International Wheat Genome Sequencing Consortium
Science, ISSN 0036-8075, 2014, Volume 345, Issue 6194, pp. 1250092 - 1250092
The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B, and D), but a clear understanding of their phylogenetic history has... 
EVOLUTION | ALIGNMENT | AEGILOPS-TAUSCHII | DRAFT GENOME | PACKAGE | MULTIDISCIPLINARY SCIENCES | GENES | DOMESTICATION | A-GENOME | TRITICUM | Triticum - genetics | Polyploidy | Genes, Plant | Hybridization, Genetic | Genome, Plant | Phylogeny | Bread | Evolution, Molecular | Triticum - classification | Wheat | Genomes | Hybridization | Foundations | Evolutionary | Genes | Multilevel | Speciation
Journal Article