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1. Full Text The art and science of species delimitation
by Bruce RANNALA
Current zoology, ISSN 1674-5507, 2015, Volume 61, Issue 5, pp. 846 - 853
物种鉴定 | 种类划分 | 序列数据 | 艺术与科学 | 基于模型 | 贝叶斯方法 | 测序技术 | Bayesian species delimitation | Multi-species coalescent | Species concepts | Life Sciences & Biomedicine | Zoology | Science & Technology
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2. Full Text Molecular phylogenetics: Principles and practice
by Yang, Ziheng and Rannala, Bruce
Nature reviews. Genetics, ISSN 1471-0056, 05/2012, Volume 13, Issue 5, pp. 303 - 314
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Models, Biological | Base Sequence | Humans | Molecular Sequence Data | Female | Male | Software | Models, Statistical | Phylogeny | Usage | Cladistic analysis | Molecular genetics | Research | Nucleotide sequencing | Methods | DNA sequencing | Index Medicus
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3. Full Text Unguided species delimitation using DNA sequence data from multiple loci
by Yang, Ziheng and Rannala, Bruce
Molecular biology and evolution, ISSN 0737-4038, 12/2014, Volume 31, Issue 12, pp. 3125 - 3135
Bayesian species delimitation | multispecies coalescent | species tree | nearest-neighbor interchange | guide tree | reversible-jump MCMC | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Fishes - genetics | Markov Chains | Algorithms | Animals | Computer Simulation | Bayes Theorem | Lizards - genetics | Models, Genetic | Phylogeny | Multilocus Sequence Typing | Monte Carlo Method | Uncertainty | Simulation | Genes | Phylogenetics | Topology | Bayesian analysis | Deoxyribonucleic acid--DNA | Index Medicus | Fast Track
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4. Full Text Improved reversible jump algorithms for Bayesian species delimitation
by Rannala, Bruce and Yang, Ziheng
Genetics (Austin), ISSN 0016-6731, 2013, Volume 194, Issue 1, pp. 245 - 253
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fishes - genetics | Markov Chains | Algorithms | Animals | Species Specificity | Computer Simulation | Bayes Theorem | Databases, Genetic | Lizards - genetics | Models, Genetic | Monte Carlo Method | Bayesian statistical decision theory | Markov processes | Usage | Research | Biological diversity | Biodiversity | Bayesian analysis | Index Medicus | species delimitation | reversible jump | Bayesian inference | Markov chain Monte Carlo | Investigations
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5. Full Text Efficient Bayesian Species Tree Inference under the Multispecies Coalescent
by Bruce Rannala and Ziheng Yang
Systematic biology, ISSN 1063-5157, 9/2017, Volume 66, Issue 5, pp. 823 - 842
multispecies coalescent | species tree | SPR | nodeslider | MCMC | Bayes factor | Bayesian inference | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Algorithms | Animals | Crotalus - classification | Models, Biological | Computer Simulation | Bayes Theorem | Crotalus - genetics | Shrews - classification | Classification - methods | Phylogeny | Shrews - genetics | Nearest-neighbor | Genes | Markov chains | Topology | Statistics | Mitochondria | Simulation | Efficiency | Pruning | Bayesian analysis | Species | Heuristic | Index Medicus
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6. Full Text Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
by Rannala, Bruce and Yang, Ziheng
Genetics (Austin), ISSN 0016-6731, 08/2003, Volume 164, Issue 4, pp. 1645 - 1656
Monte Carlo method | Apes | Usage | Human beings | Nucleotide sequence | DNA | Evolution | Genetics | Genetic aspects | Man | Research | Population genetics
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7. Full Text Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analyses
by Yang, Ziheng and Rannala, Bruce
Molecular ecology, ISSN 0962-1083, 06/2017, Volume 26, Issue 11, pp. 3028 - 3036
species delimitation | bpp | species identification | DNA barcoding | coalescent | Biochemistry & Molecular Biology | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Models, Genetic | Gene Library | DNA Barcoding, Taxonomic | Genes, Mitochondrial | Computer Simulation | Bayes Theorem | Genetic research | Analysis | Bar codes | DNA | Species diversity | COI protein | Mitochondria | Divergence | Thresholds | Computer simulation | Computer applications | Genetic distance | Biodiversity | Bayesian analysis | Deoxyribonucleic acid--DNA | Gene sequencing | Index Medicus
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8. Full Text Inferring Speciation Times under an Episodic Molecular Clock
by Bruce Rannala and Ziheng Yang
Systematic biology, ISSN 1063-5157, 6/2007, Volume 56, Issue 3, pp. 453 - 466
Datasets | Cats | Divergent evolution | Branches | Genetic loci | Calibration | Phylogeny | Modeling | We they distinction | Fossils | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Algorithms | Animals | Time Factors | Computer Simulation | Genetic Speciation | Humans | Bayes Theorem | Classification - methods | Models, Genetic | Evolution, Molecular | Felidae - classification | Medical research | Computer simulation | Ratings & rankings | Evolution | Stochastic models | Estimates | Methods | Index Medicus
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9. Full Text Phylogenetic inference using whole genomes
by Rannala, Bruce and Yang, Ziheng
Annual review of genomics and human genetics, ISSN 1527-8204, 2008, Volume 9, Issue 1, pp. 217 - 231
Coalescent process | Gene tree | Genomic sequences | Genomics - statistics & numerical data | Data Interpretation, Statistical | Animals | Recombination, Genetic | Humans | Gene Transfer, Horizontal | Software | Phylogeny | Sequence Alignment - statistics & numerical data | Genome | Databases, Genetic - statistics & numerical data | Polymorphism, Genetic | Index Medicus
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10. Full Text The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods
by Adam D. Leaché and Bruce Rannala
Systematic biology, ISSN 1063-5157, 3/2011, Volume 60, Issue 2, pp. 126 - 137
Biological taxonomies | Estimate reliability | Demography | Genetic concordance | Phylogenetics | Inference | Genetic loci | Population size | Species | Estimation methods | tree shape | incomplete lineage sorting | multilocus data | phylogeny reconstruction | simulation | Coalescence | gene trees | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Plants - genetics | Computer Simulation | Genetic Speciation | Bayes Theorem | Classification - methods | Phylogeny | Plants - classification | Trees | Accuracy | Computer simulation | Genes | Probability | Estimating techniques | Comparative analysis | Bayesian analysis | Index Medicus
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11. Full Text Bayesian Inference of Recent Migration Rates Using Multilocus Genotypes
by Wilson, Gregory A and Rannala, Bruce
Genetics (Austin), ISSN 0016-6731, 03/2003, Volume 163, Issue 3, pp. 1177 - 1191
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Gene Frequency | Humans | Wolves - genetics | Probability | Genotype | Chromosome Mapping | Models, Statistical | Linkage Disequilibrium | Likelihood Functions | Animals | Computer Simulation | Bayes Theorem | Centaurea - genetics | Animal Migration | Models, Genetic | Bayesian statistical decision theory | Emigration and immigration | Migrations of nations | Genetic aspects | Models | Bayesian analysis | Gene loci | Index Medicus
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12. Full Text Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
by Rannala, Bruce and Yang, Ziheng
Genetics (Austin), ISSN 0016-6731, 08/2003, Volume 164, Issue 4, pp. 1645 - 1656
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genetics, Population | Markov Chains | Reproducibility of Results | Species Specificity | Humans | Pan troglodytes - genetics | Models, Statistical | Hominidae - genetics | Algorithms | Animals | Time Factors | Base Sequence | Population Density | Alleles | Bayes Theorem | Monte Carlo Method | Evolution, Molecular | Evolution | Population genetics | Deoxyribonucleic acid | DNA | Index Medicus
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13. Full Text The Bayesian revolution in genetics
by Beaumont, Mark A and Rannala, Bruce
Nature reviews. Genetics, ISSN 1471-0056, 04/2004, Volume 5, Issue 4, pp. 251 - 261
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Classical genetics, quantitative genetics, hybrids | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Methods, theories and miscellaneous | Quantitative Trait, Heritable | Humans | Bayes Theorem | Genetics - statistics & numerical data | Probability | Models, Genetic | Genome, Human | Biometry | Genetic Linkage | Index Medicus
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