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Molecular & Cellular Oncology, ISSN 2372-3556, 05/2019, Volume 6, Issue 3, p. 1561118
Network approaches are ubiquitous, from social and ecological systems up to complex biological processes. In our recently published work we used the network... 
network theory | Systems oncology | personalized medicine
Journal Article
PLoS ONE, ISSN 1932-6203, 06/2014, Volume 9, Issue 6, p. e97857
Journal Article
Molecular Systems Biology, ISSN 1744-4292, 05/2019, Volume 15, Issue 5, pp. e8339 - n/a
In chronic lymphocytic leukemia ( CLL ), a diverse set of genetic mutations is embedded in a deregulated epigenetic landscape that drives cancerogenesis. To... 
enhancer | gene regulatory networks | histone modifications | DNA | methylation | bivalent promoter | DNA methylation | READ ALIGNMENT | CLL | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOME | HYPOMETHYLATION | SUPER-ENHANCERS | REVEALS PRINCIPLES | BIOLOGY | MUTATIONS | BINDING
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 01/2016, Volume 17, Issue 2, p. 15
Background: Methods for the integrative analysis of multi-omics data are required to draw a more complete and accurate picture of the dynamics of molecular... 
Data integration | Multi-omics | Omics | PATHWAYS | NETWORK | IDENTIFY | KERNEL | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | R-PACKAGE | EXPRESSION | Algorithms | Humans | Bayes Theorem | Least-Squares Analysis | Models, Genetic | Software | Genomics - methods | Physiological aspects | Research | Gene expression | Macromolecules
Journal Article
Journal Article
Journal Article
Scientific Reports, ISSN 2045-2322, 10/2016, Volume 6, Issue 1, p. 34841
A relation exists between network proximity of molecular entities in interaction networks, functional similarity and association with diseases. The... 
PATHWAYS | EXPRESSION ANALYSIS | GENE | PACKAGE | MULTIDISCIPLINARY SCIENCES | PREDICTION | Adenocarcinoma | Statistical analysis | Transcription | Genes | Data processing | Diffusion | Prostate
Journal Article
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, ISSN 1539-3755, 12/2014, Volume 90, Issue 6, p. 062817
Multiplex networks describe a large number of systems ranging from social networks to the brain. These multilayer structure encode information in their... 
ORGANIZATION | SYSTEMS | INTERDEPENDENT NETWORKS | PHYSICS, MATHEMATICAL | PHYSICS, FLUIDS & PLASMAS | FEATURES
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 4514 - 10
Journal Article
Linear Algebra and its Applications, ISSN 0024-3795, 05/2018, Volume 544, p. 206
In this paper we investigate the relation between eigenvalue distribution and graph structure of two classes of graphs: the (m, k)-stars and l-dependent... 
Matrix | Eigenvalues | Graphs | Graph theory | Eigenvectors | Topology
Journal Article
Aging Cell, ISSN 1474-9718, 10/2018, Volume 17, Issue 5, pp. e12824 - n/a
Journal Article
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 6005 - 8
Many studies investigated age-related changes in gene expression of different tissues, with scarce agreement due to the high number of affecting factors.... 
BIOMARKERS | WHOLE-BLOOD | LONGEVITY | ACTIVATION | AGE-ASSOCIATED CHANGES | HUMAN BRAIN | MULTIDISCIPLINARY SCIENCES | PERIPHERAL-BLOOD | TNF-ALPHA | TRANSCRIPTIONAL PROFILE | LYMPHOCYTES | Environmental factors | Lymphocytes T | Hybridization | Life span | Gene expression | Age
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 10/2009, Volume 10, Issue 12, pp. I1 - I1
In this paper we provide an introduction to the techniques for multi-scale complex biological systems, from the single bio-molecule to the cell, combining... 
BIOCHEMICAL RESEARCH METHODS | STANDARDS | NETWORKS | SIMULATION | STOCHASTIC GENE-EXPRESSION | P-SYSTEMS | INTEGRATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CELL-CYCLE | ASSOCIATION | MICROARRAY DATA | Computational Biology - methods | Disease