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1. Full Text The Availability of Research Data Declines Rapidly with Article Age
by Vines, Timothy H and Albert, Arianne Y.K and Andrew, Rose L and Débarre, Florence and Bock, Dan G and Franklin, Michelle T and Gilbert, Kimberly J and Moore, Jean-Sébastien and Renaut, Sébastien and Rennison, Diana J
Current Biology, ISSN 0960-9822, 01/2014, Volume 24, Issue 1, pp. 94 - 97
Policies ensuring that research data are available on public archives are increasingly being implemented at the government [ ], funding agency [ ], and journal... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | AUTHORS | CELL BIOLOGY | Biomedical Research | Internet | Time Factors | Publishing - statistics & numerical data | Databases, Factual | Computer storage devices | Information management | Research institutes
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2. Full Text Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure
by Gilbert, Kimberly J and Andrew, Rose L and Bock, Dan G and Franklin, Michelle T and Kane, Nolan C and Moore, Jean‐Sébastien and Moyers, Brook T and Renaut, Sébastien and Rennison, Diana J and Veen, Thor and Vines, Timothy H
Molecular Ecology, ISSN 0962-1083, 10/2012, Volume 21, Issue 20, pp. 4925 - 4930
Reproducibility is the benchmark for results and conclusions drawn from scientific studies, but systematic studies on the reproducibility of scientific results... 
population genetics | population clustering | reproducibility | structure | MULTILOCUS GENOTYPE DATA | STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | MARKERS | INFERENCE | IDENTIFICATION | SOFTWARE | EVOLUTIONARY BIOLOGY | ECOLOGY | DIFFERENTIATION | Computational Biology - methods | Data Interpretation, Statistical | Reproducibility of Results | Genetics, Population - methods | Bayes Theorem | Databases, Genetic | Software | Cluster Analysis
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3. Full Text Mandated data archiving greatly improves access to research data
by Vines, Timothy H and Andrew, Rose L and Bock, Dan G and Franklin, Michelle T and Gilbert, Kimberly J and Kane, Nolan C and Moore, Jean-Sébastien and Moyers, Brook T and Renaut, Sébastien and Rennison, Diana J and Veen, Thor and Yeaman, Sam
FASEB Journal, ISSN 0892-6638, 04/2013, Volume 27, Issue 4, pp. 1304 - 1308
The data underlying scientific papers should be accessible to researchers both now and in the future, but how best can we ensure that these data are available?... 
Science policy | Structure | Reproducibility | Population genetics | Joint data archiving policy | population genetics | reproducibility | STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | AUTHORS | science policy | Joint Data Archiving Policy | CELL BIOLOGY | Policy | Peer Review, Research | Humans | Biomedical Research | Archives | Data Collection - methods | Databases, Factual
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4. A new approach to quantify the adaptive potential of gene expression variation in gymnosperms
by Sébastien Renaut
Molecular Ecology, ISSN 0962-1083, 05/2013, Volume 22, Issue 9, p. 2361
  Variation in patterns of gene expression contributes to phenotypic diversity and can ultimately predict adaptive responses. However, in many cases, the... 
Genotype & phenotype | Plant biology | Genetic diversity | Mutation | Gene expression
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5. Full Text On the origin of species: insights from the ecological genomics of lake whitefish
by Louis Bernatchez and Sébastien Renaut and Andrew R. Whiteley and Nicolas Derome and Julie Jeukens and Lysandre Landry and Guoqing Lu and Arne W. Nolte and Kjartan Østbye and Sean M. Rogers and Jérôme St-Cyr
Philosophical Transactions: Biological Sciences, ISSN 0962-8436, 6/2010, Volume 365, Issue 1547, pp. 1783 - 1800
In contrast to the large amount of ecological information supporting the role of natural selection as a main cause of population divergence and speciation, an... 
Metagenomics | Ecological genetics | Genes | Genomics | Evolutionary genetics | Genetic loci | Whitefish | Genomes | Review | Hybridity | Speciation | Ecological genomics | 454 sequencing | Microarrays | Selection | Stickleback | PARALLEL EVOLUTION | DROSOPHILA-MELANOGASTER | COREGONUS-LAVARETUS L | MITOCHONDRIAL-DNA | speciation | microarrays | ecological genomics | selection | NATURAL-SELECTION | BIOLOGY | GENE-EXPRESSION | SYMPATRIC WHITEFISH | INTROGRESSIVE HYBRIDIZATION | CLUPEAFORMIS MITCHILL | stickleback | QUANTITATIVE GENETICS | Adaptation, Physiological | Salmonidae - classification | Selection, Genetic | Reproduction - genetics | Male | Gene Expression Profiling | Salmonidae - genetics | Phenotype | Animals | Salmonidae - physiology | Ecosystem | Genetic Speciation | Female | Fresh Water | Models, Genetic | Quantitative Trait Loci | Genomics - trends | 1001 | 129 | 181
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6. Full Text Contemporary hybrid speciation in sculpins (Cottus spp.)
: NEWS AND VIEWS: PERSPECTIVE
by RENAUT, SÉBASTIEN
Molecular Ecology, ISSN 0962-1083, 04/2011, Volume 20, Issue 7, pp. 1320 - 1321
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7. Full Text Genome sequencing: Illuminating the sunflower genome
by Renaut, Sébastien
Nature Plants, ISSN 2055-026X, 06/2017, Volume 3, Issue 7, p. 17099
A high-quality sunflower genome provides insight into Asterid genome evolution. Moreover, integrative analyses based on quantitative genetics, expression and... 
PLANT SCIENCES | Genes, Plant | Base Sequence | Humans | Genotype | Chromosome Mapping | Polymorphism, Single Nucleotide | Genome, Plant | Genome | Helianthus - genetics
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8. Full Text Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
by Renaut, Sébastien and Budden, Amber E and Gravel, Dominique and Poisot, Timothée and Peres-Neto, Pedro
BioScience, ISSN 0006-3568, 06/2018, Volume 68, Issue 6, pp. 400 - 411
Abstract Data are one of the primary outputs of science. Although certain subdisciplines of biology have pioneered efforts to ensure their long-term... 
data archiving | data reuse | data management | science policy | data sharing
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9. Full Text Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis)
by Hebert, Francois Olivier and Renaut, Sébastien and Bernatchez, Louis
Molecular Ecology, ISSN 0962-1083, 10/2013, Volume 22, Issue 19, pp. 4896 - 4914
Latest technological developments in evolutionary biology bring new challenges in documenting the intricate genetic architecture of species in the process of... 
lake whitefish | population genomics | sequence capture | next‐generation sequencing | genome scan | speciation | next-generation sequencing | BIOCHEMISTRY & MOLECULAR BIOLOGY | DIFFERENTIAL INTROGRESSION | GENOME | ECOLOGICAL SPECIATION | QUANTITATIVE TRAIT LOCI | SYNONYMOUS CODON USAGE | GENETIC-VARIATION | EVOLUTIONARY BIOLOGY | EVOLUTION | ADAPTATION | ECOLOGY | ADAPTIVE DIVERGENCE | SELECTION | Salmonidae - genetics | Genetics, Population | Animals | Oligonucleotide Array Sequence Analysis | Gene Flow | Genetic Speciation | Lakes | Sympatry | Polymorphism, Single Nucleotide | Sequence Analysis, DNA | Genetic research | Evolutionary biology | Genes | Genomics | Fish | Genetic diversity | Polymorphism
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10. Full Text Analysis of proteome and frost tolerance in chromosome 5A and 5B reciprocal substitution lines between two winter wheats during long‐term cold acclimation
by Vítámvás, Pavel and Prášil, Ilja T and Kosová, Klára and Planchon, Sébastien and Renaut, Jenny
PROTEOMICS, ISSN 1615-9853, 01/2012, Volume 12, Issue 1, pp. 68 - 85
Dynamics of cold tolerance and crown proteome composition has been analysed in a set of two winter wheat cultivars Mironovskaya 808 and Bezostaya 1 and four... 
Plant proteomics | Crowns | Cold‐acclimation | Plant stress | Two‐dimensional differential in‐gel electrophoresis | Winter wheat | Cold-acclimation | Two-dimensional differential in-gel electrophoresis | EXPRESSION ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | 2-DIMENSIONAL ELECTROPHORESIS | DISTINCT LEVELS | LOW-TEMPERATURE TOLERANCE | WCS120 PROTEIN | DIFFERENTIAL GEL-ELECTROPHORESIS | STRESS RESPONSES | GENE-EXPRESSION | VERNALIZATION | FREEZING TOLERANCE | Cold Temperature | Proteome - genetics | Triticum - physiology | Two-Dimensional Difference Gel Electrophoresis | Chromosomes, Plant | Triticum - metabolism | Triticum - genetics | Plant Proteins - genetics | Phenotype | Metabolic Networks and Pathways | Adaptation, Physiological - genetics | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Principal Component Analysis | Proteome - metabolism | Cluster Analysis | Proteins | Chromosomes | Wheat
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11. Full Text Plant community and nitrogen deposition as drivers of alpha and beta diversities of prokaryotes in reconstructed oil sand soils and natural boreal forest soils
by Masse, Jacynthe and Prescott, Cindy E and Renaut, Sébastien and Terrat, Yves and Grayston, Sue J
Applied and Environmental Microbiology, ISSN 0099-2240, 05/2017, Volume 83, Issue 9
The Athabasca oil sand deposit is one of the largest single oil deposits in the world. Following surface mining, companies are required to restore soil-like... 
Boreal forest soil | Plant community | Oil sands | Nitrogen deposition | Biodiversity | Soil restoration | Microbial community | Soil microbiology | soil restoration | biodiversity | RHIZOSPHERE COMMUNITIES | CANADA | CARBON | boreal forest soil | oil sands | nitrogen deposition | MICROBIOLOGY | plant community | soil microbiology | MICROORGANISMS | microbial community | TROPICAL RAIN-FOREST | MICROBIAL COMMUNITIES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BACTERIAL COMMUNITIES | ALBERTA | ECOSYSTEMS | FIXATION | Soil Microbiology | Biota | Archaea - isolation & purification | Phylogeny | Trees - growth & development | Archaea - classification | Bacteria - genetics | DNA, Ribosomal - chemistry | Sequence Analysis, DNA | Canada | Bacteria - isolation & purification | Soil - chemistry | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Taiga | Environmental Restoration and Remediation | Poaceae - growth & development | Cluster Analysis | DNA, Ribosomal - genetics | Plant communities | Research | Prokaryotes | Ribosomal RNA | Index Medicus
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12. Full Text Combining Proteomics and Metabolite Analyses To Unravel Cadmium Stress-Response in Poplar Leaves
by Kieffer, Pol and Planchon, Sébastien and Oufir, Mouhssin and Ziebel, Johanna and Dommes, Jacques and Hoffmann, Lucien and Hausman, Jean-François and Renaut, Jenny
Journal of Proteome Research, ISSN 1535-3893, 01/2009, Volume 8, Issue 1, pp. 400 - 417
A proteomic analysis of poplar leaves exposed to cadmium, combined with biochemical analysis of pigments and carbohydrates revealed changes in primary carbon... 
Primary carbon metabolism | Poplar | Cadmium | Carbohydrate | ARABIDOPSIS-THALIANA | poplar | BIOCHEMICAL RESEARCH METHODS | BIOMASS PRODUCTION | carbohydrate | ORYZA-SATIVA L | COPPICE CULTURE | HEAVY-METAL ACCUMULATION | CLONAL VARIATION | GLUTAMINE-SYNTHETASE | GENE-EXPRESSION | cadmium | primary carbon metabolism | NADP-MALIC ENZYME | CARBOHYDRATE-METABOLISM | Amino Acid Sequence | Up-Regulation | Cadmium - toxicity | Oxygen Consumption | Molecular Sequence Data | Mitochondria - metabolism | Carbon - chemistry | Chlorophyll - chemistry | Carbohydrates - chemistry | Models, Biological | Photosynthesis - drug effects | Polymers - chemistry | Populus - growth & development | Plant Leaves - drug effects | Proteomics - methods | Populus - drug effects | Index Medicus
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13. Full Text Proteome Analysis of Cold Response in Spring and Winter Wheat (Triticum aestivum) Crowns Reveals Similarities in Stress Adaptation and Differences in Regulatory Processes between the Growth Habits
by Kosová, Klára and Vítámvás, Pavel and Planchon, Sébastien and Renaut, Jenny and Vanková, Radomíra and Prášil, Ilja Tom
Journal of Proteome Research, ISSN 1535-3893, 11/2013, Volume 12, Issue 11, pp. 4830 - 4845
A proteomic response to cold treatment (4 °C) has been studied in crowns of a frost-tolerant winter wheat cultivar Samanta and a frost-sensitive spring wheat... 
2D-DIGE analysis | spring and winter growth habit | cold acclimation | cold stress | wheat crown | development response | ARABIDOPSIS-THALIANA | FROST TOLERANCE | BIOCHEMICAL RESEARCH METHODS | GERMIN-LIKE PROTEINS | BARLEY ROOTS | RNA-BINDING PROTEIN | WCS120 PROTEIN | SALT STRESS | ACCLIMATION | OXALATE OXIDASE ACTIVITY | HIGH SALINITY | Cold Temperature | Species Specificity | Stress, Physiological - genetics | Adaptation, Biological - genetics | Computational Biology | Gene Expression Regulation, Plant - genetics | Triticum - growth & development | Electrophoresis, Gel, Two-Dimensional | Adaptation, Biological - physiology | Triticum - metabolism | Triticum - genetics | Plant Proteins - genetics | Analysis of Variance | Gene Expression Regulation, Plant - physiology | Proteomics | Plant Proteins - metabolism | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Densitometry | Principal Component Analysis | Cluster Analysis
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14. Full Text Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber
by Pinheiro, C and Wienkoop, S and de Almeida, JF and Brunetti, C and Zarrouk, O and Planchon, S and Gori, A and Tattini, M and Ricardo, CP and Renaut, J and Teixeira, RT
FRONTIERS IN PLANT SCIENCE, ISSN 1664-462X, 07/2019, Volume 10, p. 944
Cork is a renewable, non-wood high valued forest product, with relevant ecological and economic impact in the Mediterranean-type ecosystems. Currently, cork is... 
PLANT | ACID | proteomics | targeted metabolomics | PLANT SCIENCES | hydrolysable tannins | POLYPHENOLS | soluble phenolics | cell-wall immobilized phenolics | DATABASE | BIOSYNTHESIS | DIVERSITY | EXPRESSION | Cork | Quality management
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