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1. Full Text QnAs with Gerald M. Rubin
by Prashant Nair and Gerald M. Rubin
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 11/2016, Volume 113, Issue 48, pp. 13543 - 13545
QNAS | MULTIDISCIPLINARY SCIENCES | Interviews | Geneticists | QnAs
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2. Exploring requirements
: quality before design
by Gause, Donald C and Weinberg, Gerald M
1989, ISBN 0932633137, xvii, 299
New products | Industrial design | Technological innovations
Book
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3. US allies in a changing world
by Rubin, Barry M and Keaney, Thomas A
2001, BESA studies in international security, ISBN 0714650781, 23 cm.
History | United States Foreign relations | Alliances
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4. Full Text Looking back and looking forward at Janelia
by Rubin, Gerald M and O'Shea, Erin K
eLife, ISSN 2050-084X, 02/2019, Volume 8
Starting a new research campus is a leap of faith. Only later, in the full measure of time, is it possible to take stock of what has worked and what could have... 
mouse | chemical biology | rat | neuroscience | biochemistry | Janelia Research Campus | science policy | zebrafish | D. melanogaster | virus | careers in science | organization of research | BIOLOGY | Medical research | Microscopy | Insects | Laboratories | Funding | Collaboration | Science | Interdisciplinary aspects | Gene expression | Experiments
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5. Full Text Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system
by Aljoscha Nern and Barret D. Pfeiffer and Gerald M. Rubin
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2015, Volume 112, Issue 22, pp. E2967 - E2976
We describe the development and application of methods for high-throughput neuroanatomy in using light microscopy. These tools enable efficient multicolor... 
Interneuron diversity | Light microscopy | Recombinase | Drosophila | Neuroanatomy | interneuron diversity | NERVOUS-SYSTEM | WILD-TYPE | PROTEIN | DROSOPHILA-MELANOGASTER | MULTIDISCIPLINARY SCIENCES | OPTIC LOBE | GOLGI | CIRCUITS | TARGETED GENE-EXPRESSION | NEURONS | neuroanatomy | light microscopy | MEDULLA | recombinase | Immunohistochemistry | Staining and Labeling - methods | Microscopy, Confocal | Brain - cytology | Animals | Compound Eye, Arthropod - innervation | Neural Pathways - cytology | Compound Eye, Arthropod - cytology | Genotype | Neurons - cytology | Drosophila - anatomy & histology | Drosophila - physiology | Nervous system | Usage | Research | Morphology | Microscope and microscopy | Biological Sciences | PNAS Plus
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6. Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system
by Aljoscha Nern and Barret D Pfeiffer and Gerald M Rubin
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 06/2015, Volume 112, Issue 22, p. E2967
  We describe the development and application of methods for high-throughput neuroanatomy in Drosophila using light microscopy. These tools enable efficient... 
Proteins | Cellular biology | Insects | Neurons | Stochastic models | Optimization
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7. Full Text Neuroarchitecture and neuroanatomy of the Drosophila central complex: A GAL4‐based dissection of protocerebral bridge neurons and circuits
by Wolff, Tanya and Iyer, Nirmala A and Rubin, Gerald M
Journal of Comparative Neurology, ISSN 0021-9967, 05/2015, Volume 523, Issue 7, pp. 997 - 1037
ABSTRACT Insects exhibit an elaborate repertoire of behaviors in response to environmental stimuli. The central complex plays a key role in combining various... 
ellipsoid body | fan‐shaped body | AB_528108 | AB_1625981 | nodulus | Drosophila brain | AB_1549585 | MCFO | glomerulus | AB_915420 | Glomerulus | Fan-shaped body | Ellipsoid body | Nodulus | BEHAVIOR | INSECT | NEUROSCIENCES | fan-shaped body | SCHISTOCERCA-GREGARIA | ZOOLOGY | ORIENTATION MEMORY | NEURAL ACTIVITY | NEUROBIOLOGY | MELANOGASTER | BRAIN | LOCUST | Transcription Factors - metabolism | Neuropil - metabolism | Animals | Brain - anatomy & histology | Nerve Net - anatomy & histology | Neuroanatomy | Nerve Net - metabolism | Neurons - cytology | Neurons - metabolism | Drosophila Proteins - metabolism | Drosophila - anatomy & histology
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8. Full Text Dopaminergic neurons write and update memories with cell-type-specific rules
by Aso, Yoshinori and Rubin, Gerald M
eLife, ISSN 2050-084X, 07/2016, Volume 5, Issue JULY
Associative learning is thought to involve parallel and distributed mechanisms of memory formation and storage. In Drosophila, the mushroom body (MB) is the... 
CIRCUITS | LONG-TERM-MEMORY | 2 PAIRS | BIOLOGY | AVERSIVE MEMORY | GENE-EXPRESSION | OUTPUT NEURONS | CONSOLIDATED MEMORY | EFFERENT NEURONS | REWARD | DROSOPHILA MUSHROOM BODY | Animals | Mushroom Bodies - physiology | Memory | Dopaminergic Neurons - physiology | Optogenetics | Drosophila - physiology | Smell | Physiological aspects | Neural circuitry | Dopamine | Medical research | Cell activation | Insects | Humidity | Associative learning | Behavior | Experiments | Odor | Dopamine receptors
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9. Full Text Neuroarchitecture and neuroanatomy of theDrosophilacentral complex: A GAL4-based dissection of protocerebral bridge neurons and circuits
: DrosophilaCentral Complex Anatomy and Neurons
by Wolff, Tanya and Iyer, Nirmala A and Rubin, Gerald M
Journal of Comparative Neurology, ISSN 0021-9967, 05/2015, Volume 523, Issue 7, pp. Spc1 - Spc1
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10. Full Text Neuroarchitecture and neuroanatomy of theDrosophilacentral complex: A GAL4-based dissection of protocerebral bridge neurons and circuits
: DrosophilaCentral Complex Anatomy and Neurons
by Wolff, Tanya and Iyer, Nirmala A and Rubin, Gerald M
Journal of Comparative Neurology, ISSN 0021-9967, 05/2015, Volume 523, Issue 7, pp. 997 - 1037
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11. Full Text Neuroarchitecture and neuroanatomy of the Drosophila central complex: A GAL4‐based dissection of protocerebral bridge neurons and circuits
by Wolff, Tanya and Iyer, Nirmala A and Rubin, Gerald M
Journal of Comparative Neurology, ISSN 0021-9967, 05/2015, Volume 523, Issue 7, pp. Spc1 - Spc1
ABSTRACT Insects exhibit an elaborate repertoire of behaviors in response to environmental stimuli. The central complex plays a key role in combining various... 
ellipsoid body | fan‐shaped body | AB_528108 | AB_1625981 | nodulus | Drosophila brain | AB_1549585 | MCFO | glomerulus | AB_915420 | Neurons | Surgery | Drosophila | Neurophysiology
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12. Full Text Neuroarchitecture of the Drosophila central complex: A catalog of nodulus and asymmetrical body neurons and a revision of the protocerebral bridge catalog
by Wolff, Tanya and Rubin, Gerald M
Journal of Comparative Neurology, ISSN 0021-9967, 11/2018, Volume 526, Issue 16, pp. 2585 - 2611
The central complex, a set of neuropils in the center of the insect brain, plays a crucial role in spatial aspects of sensory integration and motor control.... 
GAL4 | AB_2314866 | AB_1625981 | protocerebral bridge | nodulus | AB_1549585 | central complex | Drosophila brain | MCFO | asymmetrical body | AB_915420 | NERVOUS-SYSTEM | PATH-INTEGRATION | VISUAL-SYSTEM | INSECT BRAIN | FUNCTIONAL DISSECTION | NEUROSCIENCES | SCHISTOCERCA-GREGARIA | ZOOLOGY | SILKWORM MOTH | CONFOCAL MICROSCOPY DATA | MELANOGASTER | NEUROBIOLOGY RESEARCH | Neurons | Catalogs | Drosophila | Insects | Asymmetry | Sensory integration | Morphology | Cytology | Polarity | Neuropil | Stochasticity | Motor task performance
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13. Full Text Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila
by Hige, Toshihide and Aso, Yoshinori and Modi, Mehrab N and Rubin, Gerald M and Turner, Glenn C
Neuron, ISSN 0896-6273, 12/2015, Volume 88, Issue 5, pp. 985 - 998
Although associative learning has been localized to specific brain areas in many animals, identifying the underlying synaptic processes in vivo has been... 
LONG-TERM-MEMORY | EXTRINSIC NEURONS | IDENTIFIED NEURON | GAMMA NEURONS | OUTPUT NEURONS | ODOR MEMORY | DOPAMINERGIC-NEURONS | MUSHROOM BODY NEURONS | EFFERENT NEURONS | NEUROSCIENCES | HONEYBEE BRAIN | Green Fluorescent Proteins - metabolism | Calcium | Animals, Genetically Modified | Drosophila | Green Fluorescent Proteins - genetics | Optogenetics | Avoidance Learning - physiology | Transcription Factors - genetics | Drosophila Proteins - metabolism | Nerve Net - physiology | Odorants | Excitatory Postsynaptic Potentials - physiology | Transcription Factors - metabolism | Patch-Clamp Techniques | Animals | Neuronal Plasticity - physiology | Sensory Receptor Cells - drug effects | Sensory Receptor Cells - physiology | Olfactory Bulb - physiology | Drosophila Proteins - genetics | Photic Stimulation | Olfactory Bulb - cytology | Associative learning | Principal components analysis | Anatomy & physiology | Behavior | Insects | Neurons
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14. Full Text Using translational enhancers to increase transgene expression in Drosophila
by Barret D. Pfeiffer and James W. Truman and Gerald M. Rubin
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2012, Volume 109, Issue 17, pp. 6626 - 6631
The ability to specify the expression levels of exogenous genes inserted in the genomes of transgenic animals is critical for the success of a wide variety of... 
Untranslated regions | Messenger RNA | Germ cells | Neurons | Drosophila | Genes | Fluorescence | Nervous system | Transgenes | Genotypes | 3' UNTRANSLATED REGION | MESSENGER-RNA | INITIATION | MULTIDISCIPLINARY SCIENCES | TARGETED GENE-EXPRESSION | DYNAMIN | MUTATIONS | SHIBIRE | MELANOGASTER | BRAIN | POLY(A) TAIL | Protein Biosynthesis | Animals | Enhancer Elements, Genetic | 5' Untranslated Regions | Base Sequence | RNA, Messenger - genetics | Gene Expression Regulation | Molecular Sequence Data | 3' Untranslated Regions | Drosophila - genetics | Animal genetics | Physiological aspects | Genetic aspects | Research | Gene expression | Genetic translation | Biological Sciences
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15. Full Text Flybook: A Preface
by Rubin, Gerald M
Genetics, ISSN 0016-6731, 10/2015, Volume 201, Issue 2, pp. 343 - 343
GENETICS & HEREDITY | Models, Animal | Animals | Publishing | Research | Drosophila - genetics | Flybook
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16. Full Text Corrigendum: Control of Sleep by Dopaminergic Inputs to the Drosophila Mushroom Body
by Sitaraman, Divya and Aso, Yoshinori and Rubin, Gerald M and Nitabach, Michael N
Frontiers in neural circuits, ISSN 1662-5110, 2015, Volume 9, p. 84
[This corrects the article on p. 73 in vol. 9, PMID: 26617493.]. 
Drosophila | Sleep | Conflicts of interest | Dopamine | Insects | Dopamine receptors | Drosophila melanogaster | Synaptic Transmission | mushroom body
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17. Full Text Guidelines for the use and interpretation of assays for monitoring autophagy
by Klionsky, Daniel J and Abdalla, Fabio C and Abeliovich, Hagai and Abraham, Robert T and Acevedo-Arozena, Abraham and Adeli, Khosrow and Agholme, Lotta and Agnello, Maria and Agostinis, Patrizia and Aguirre-Ghiso, Julio A and Ahn, Hyung Jun and Ait-Mohamed, Ouardia and Ait-Si-Ali, Slimane and Akematsu, Takahiko and Akira, Shizuo and Al-Younes, Hesham M and Al-Zeer, Munir A and Albert, Matthew L and Albin, Roger L and Alegre-Abarrategui, Javier and Aleo, Maria Francesca and Alirezaei, Mehrdad and Almasan, Alexandru and Almonte-Becerril, Maylin and Amano, Atsuo and Amaravadi, Ravi K and Amarnath, Shoba and Amer, Amal O and Andrieu-Abadie, Nathalie and Anantharam, Vellareddy and Ann, David K and Anoopkumar-Dukie, Shailendra and Aoki, Hiroshi and Apostolova, Nadezda and Arancia, Giuseppe and Aris, John P and Asanuma, Katsuhiko and Asare, Nana Y.O and Ashida, Hisashi and Askanas, Valerie and Askew, David S and Auberger, Patrick and Baba, Misuzu and Backues, Steven K and Baehrecke, Eric H and Bahr, Ben A and Bai, Xue-Yuan and Bailly, Yannick and Baiocchi, Robert and Baldini, Giulia and Balduini, Walter and Ballabio, Andrea and Bamber, Bruce A and Bampton, Edward T.W and Juhász, Gábor and Bartholomew, Clinton R and Bassham, Diane C and Bast, Robert C and Batoko, Henri and Bay, Boon-Huat and Beau, Isabelle and Béchet, Daniel M and Begley, Thomas J and Behl, Christian and Behrends, Christian and Bekri, Soumeya and Bellaire, Bryan and Bendall, Linda J and Benetti, Luca and Berliocchi, Laura and Bernardi, Henri and Bernassola, Francesca and Besteiro, Sébastien and Bhatia-Kissova, Ingrid and Bi, Xiaoning and Biard-Piechaczyk, Martine and Blum, Janice S and Boise, Lawrence H and Bonaldo, Paolo and Boone, David L and Bornhauser, Beat C and Bortoluci, Karina R and Bossis, Ioannis and Bost, Frédéric and Bourquin, Jean-Pierre and Boya, Patricia and Boyer-Guittaut, Michaël and Bozhkov, Peter V and Brady, Nathan R and Brancolini, Claudio and Brech, Andreas and Brenman, Jay E and Brennand, Ana and Bresnick, Emery H and Brest, Patrick and Bridges, Dave and Bristol, Molly L and Brookes, Paul S and Brown, Eric J and Brumell, John H and ... and Linköpings universitet and Institutionen för klinisk och experimentell medicin and Geriatrik and Institutionen för medicin och hälsa and Farmakologi and Experimentell patologi and Hälsouniversitetet and Cellbiologi
Autophagy, ISSN 1554-8627, 04/2012, Volume 8, Issue 4, pp. 445 - 544
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and... 
stress | vacuole | autolysosome | flux | LC3 | autophagosome | lysosome | phagophore | Binding | Proteins | Landes | Calcium | Bioscience | Biology | Cell | Cycle | Cancer | Organogenesis | Phagophore | Lysosome | Autolysosome | Flux | Autophagosome | Vacuole | Stress | ACTIVATED PROTEIN-KINASE | CHAPERONE-MEDIATED AUTOPHAGY | VACUOLE TARGETING PATHWAY | ENDOPLASMIC-RETICULUM STRESS | ISOLATED RAT HEPATOCYTES | STARVATION-INDUCED AUTOPHAGY | GLUCAGON-INDUCED AUTOPHAGY | CELL BIOLOGY | PROGRAMMED CELL-DEATH | BREAST-CANCER CELLS | BETAINE HOMOCYSTEINE METHYLTRANSFERASE | Biological Assay - methods | Animals | Autophagy - genetics | Models, Biological | Humans | Life Sciences | Cellular Biology | Review | Medical and Health Sciences | Medicin och hälsovetenskap
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