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1. Full Text JB special review - Recent topics in ubiquitin-proteasome system and autophagy: Ubiquitin recognition by the proteasome
by Saeki, Yasushi
Journal of biochemistry (Tokyo), ISSN 0021-924X, 02/2017, Volume 161, Issue 2, pp. 113 - 124
Ubiquitin | Protein degradation | Ubiquitin ligase | ATPase | Proteasome | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology
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2. Full Text Ubiquitin is phosphorylated by PINK1 to activate parkin
by Koyano, Fumika and Okatsu, Kei and Kosako, Hidetaka and Tamura, Yasushi and Go, Etsu and Kimura, Mayumi and Kimura, Yoko and Tsuchiya, Hikaru and Yoshihara, Hidehito and Hirokawa, Takatsugu and Endo, Toshiya and Fon, Edward A and Trempe, Jean-François and Saeki, Yasushi and Tanaka, Keiji and Matsuda, Noriyuki
Nature (London), ISSN 0028-0836, 2014, Volume 510, Issue 7503, pp. 162 - 166
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Protein Kinases - metabolism | Phosphorylation | Humans | Ubiquitin - chemistry | Ubiquitin - metabolism | Ubiquitin-Protein Ligases - metabolism | Mitochondria - metabolism | Mutation - genetics | Phosphoserine - metabolism | Parkinson Disease | Ubiquitination | Animals | Membrane Potential, Mitochondrial | Fibroblasts | Mice | Enzyme Activation | HeLa Cells | Ubiquitin-Protein Ligases - genetics | Ubiquitin | Parkinsonism | Physiological aspects | Genetic aspects | Phosphotransferases | Proteins | Studies | Cell culture | Mitochondria | Parkinsons disease | Mutation | Kinases | Index Medicus
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3. Full Text Ubiquitin recognition by the proteasome
by Saeki, Yasushi
Journal of biochemistry (Tokyo), ISSN 0021-924X, 02/2017, Volume 161, Issue 2, pp. 113 - 124
Signal Transduction | Models, Biological | Proteolysis | Humans | Valosin Containing Protein | Cell Cycle Proteins - metabolism | Ubiquitin - metabolism | Ubiquitin-Protein Ligases - metabolism | Adenosine Triphosphatases - metabolism | Lysine - metabolism | Proteasome Endopeptidase Complex - metabolism | Ubiquitinated Proteins - metabolism | Index Medicus
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4. Full Text Quantitative live-cell imaging reveals spatio-temporal dynamics and cytoplasmic assembly of the 26S proteasome
by Pack, Chan-Gi and Yukii, Haruka and Toh-E, Akio and Kudo, Tai and Tsuchiya, Hikaru and Kaiho, Ai and Sakata, Eri and Murata, Shigeo and Yokosawa, Hideyoshi and Sako, Yasushi and Baumeister, Wolfgang and Tanaka, Keiji and Saeki, Yasushi
Nature communications, ISSN 2041-1723, 03/2014, Volume 5, Issue 1, pp. 3396 - 3396
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Saccharomyces cerevisiae Proteins - ultrastructure | Green Fluorescent Proteins - metabolism | Saccharomyces cerevisiae - genetics | Cytoplasm - metabolism | Green Fluorescent Proteins - genetics | Saccharomyces cerevisiae Proteins - genetics | Cryoelectron Microscopy | Proteasome Endopeptidase Complex - genetics | Saccharomyces cerevisiae - metabolism | Microscopy, Confocal | Cell Nucleus - metabolism | Proteasome Endopeptidase Complex - ultrastructure | Time Factors | Saccharomyces cerevisiae Proteins - metabolism | Luminescent Proteins - genetics | Time-Lapse Imaging - methods | Active Transport, Cell Nucleus | Kinetics | Mutation | Proteasome Endopeptidase Complex - metabolism | Microscopy, Fluorescence | Luminescent Proteins - metabolism | Index Medicus
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5. Full Text Phosphorylated ubiquitin chain is the genuine Parkin receptor
by Okatsu, Kei and Koyano, Fumika and Kimura, Mayumi and Kosako, Hidetaka and Saeki, Yasushi and Tanaka, Keiji and Matsuda, Noriyuki
The Journal of cell biology, ISSN 0021-9525, 2015, Volume 209, Issue 1, pp. 111 - 128
Life Sciences & Biomedicine | Science & Technology | Cell Biology | Polyubiquitin - metabolism | Protein Kinases - metabolism | Amino Acid Sequence | Mitochondria - enzymology | Phosphorylation | Humans | Ubiquitin-Protein Ligases - metabolism | Molecular Sequence Data | Protein Binding | Protein Processing, Post-Translational | HeLa Cells | Protein Transport | Ubiquitin | Physiological aspects | Mitochondrial DNA | Proteins | Mitochondria | Cellular biology | Cells | Parkinsons disease | Index Medicus
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6. Full Text The K48-K63 Branched Ubiquitin Chain Regulates NF-κB Signaling
by Ohtake, Fumiaki and Saeki, Yasushi and Ishido, Satoshi and Kanno, Jun and Tanaka, Keiji
Molecular cell, ISSN 1097-2765, 10/2016, Volume 64, Issue 2, pp. 251 - 266
NF-κB | CYLD | AQUA | proteomics | Lys63 | inflammation | TRAF6 | HUWE1 | Lys48 | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Adaptor Proteins, Signal Transducing - chemistry | Interleukin-1beta - pharmacology | Deubiquitinating Enzyme CYLD | Humans | Ubiquitin - metabolism | Substrate Specificity | NF-kappa B - metabolism | NF-kappa B - chemistry | Polyubiquitin - genetics | Ubiquitination | Tumor Suppressor Proteins - chemistry | Tumor Suppressor Proteins - genetics | Lysine - metabolism | Protein Interaction Domains and Motifs | Osteoblasts - cytology | TNF Receptor-Associated Factor 6 - genetics | Binding Sites | Polyubiquitin - chemistry | Polyubiquitin - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Protein Conformation, alpha-Helical | Gene Expression | Tumor Suppressor Proteins - metabolism | Signal Transduction | Osteoblasts - drug effects | Ubiquitin - chemistry | Ubiquitin-Protein Ligases - metabolism | Models, Molecular | Recombinant Proteins - chemistry | Recombinant Proteins - genetics | Ubiquitin - genetics | Ubiquitin-Protein Ligases - chemistry | Sequence Alignment | NF-kappa B - genetics | Protein Conformation, beta-Strand | Adaptor Proteins, Signal Transducing - genetics | TNF Receptor-Associated Factor 6 - chemistry | TNF Receptor-Associated Factor 6 - metabolism | Cell Line, Tumor | Protein Binding | Adaptor Proteins, Signal Transducing - metabolism | Lysine - chemistry | Osteoblasts - metabolism | Ubiquitin-Protein Ligases - genetics | Index Medicus
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7. Full Text The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification
by Tsuchiya, Hikaru and Tanaka, Keiji and Saeki, Yasushi
Biochemical and biophysical research communications, ISSN 0006-291X, 06/2013, Volume 436, Issue 2, pp. 223 - 229
Ubiquitin | Yeast | Proteolysis | Mass spectrometry | Proteasome | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Polyubiquitin - metabolism | Saccharomyces cerevisiae - genetics | Ubiquitin - metabolism | Ubiquitin-Protein Ligases - metabolism | Molecular Sequence Data | Ubiquitin - genetics | Saccharomyces cerevisiae Proteins - genetics | Blotting, Western | Polyubiquitin - genetics | Saccharomyces cerevisiae - metabolism | Lysine - genetics | Ubiquitination | Saccharomyces cerevisiae Proteins - metabolism | beta-Galactosidase - metabolism | Lysine - metabolism | Mutation | beta-Galactosidase - genetics | Ubiquitin-Protein Ligases - genetics | Mass Spectrometry - methods | Methods | Index Medicus | YEASTS | KNOCK-OUT REACTIONS | MASS SPECTROSCOPY | IN VIVO | PROTEOLYSIS | 60 APPLIED LIFE SCIENCES | PROLINE | GALACTOSIDASE
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8. Full Text Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways
by Ikeuchi, Ken and Tesina, Petr and Matsuo, Yoshitaka and Sugiyama, Takato and Cheng, Jingdong and Saeki, Yasushi and Tanaka, Keiji and Becker, Thomas and Beckmann, Roland and Inada, Toshifumi
The EMBO journal, ISSN 0261-4189, 03/2019, Volume 38, Issue 5, p. n/a
no‐go mRNA decay | ribosome quality control | RQT complex | ubiquitination | ribosome collision | no-go mRNA decay | Protein Biosynthesis | Ribosomal Proteins - genetics | Saccharomyces cerevisiae - genetics | RNA, Messenger - genetics | Ubiquitin - metabolism | Ubiquitin-Protein Ligases - metabolism | Ribosomes - metabolism | Saccharomyces cerevisiae Proteins - genetics | RNA Stability | RNA, Messenger - metabolism | Ribosomal Proteins - metabolism | Cryoelectron Microscopy | Saccharomyces cerevisiae - metabolism | Ribosomes - ultrastructure | Ubiquitination | Saccharomyces cerevisiae Proteins - metabolism | Ubiquitin-Protein Ligases - genetics | Ubiquitin | Yeast | Polypeptides | mRNA turnover | Ribosomes | Upstream | mRNA | Pattern recognition | Proteins | Pathways | Decay | Quality control | Stalling | Ubiquitin-protein ligase | Index Medicus | Post-translational Modifications, Proteolysis & Proteomics | Structural Biology | Protein Biosynthesis & Quality Control
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9. Full Text Ubiquitination of stalled ribosome triggers ribosome-associated quality control
by Matsuo, Yoshitaka and Ikeuchi, Ken and Saeki, Yasushi and Iwasaki, Shintaro and Schmidt, Christian and Udagawa, Tsuyoshi and Sato, Fumiya and Tsuchiya, Hikaru and Becker, Thomas and Tanaka, Keiji and Ingolia, Nicholas T and Beckmann, Roland and Inada, Toshifumi
Nature communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, pp. 159 - 14
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Saccharomyces cerevisiae - metabolism | Protein Biosynthesis | Ubiquitination | Gene Expression Regulation, Fungal - physiology | Saccharomyces cerevisiae - genetics | Humans | HEK293 Cells | Saccharomyces cerevisiae Proteins - metabolism | Protein Conformation | Mutation | Saccharomyces cerevisiae Proteins - genetics | Ribosomes - physiology | Proteins | Degradation | Ubiquitin | Polypeptides | Ribosomal proteins | Quality control | Aberration | Ubiquitin-protein ligase | Index Medicus
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10. Full Text Mutations in the deubiquitinase gene USP8 cause Cushing's disease
by Reincke, Martin and Sbiera, Silviu and Hayakawa, Akira and Theodoropoulou, Marily and Osswald, Andrea and Beuschlein, Felix and Meitinger, Thomas and Mizuno-Yamasaki, Emi and Kawaguchi, Kohei and Saeki, Yasushi and Tanaka, Keiji and Wieland, Thomas and Graf, Elisabeth and Saeger, Wolfgang and Ronchi, Cristina L and Allolio, Bruno and Buchfelder, Michael and Strom, Tim M and Fassnacht, Martin and Komada, Masayuki
Nature genetics, ISSN 1061-4036, 01/2015, Volume 47, Issue 1, pp. 31 - 38
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Adenoma - genetics | Humans | Neoplasm Proteins - physiology | Gene Expression Regulation, Neoplastic | Cercopithecus aethiops | Endosomal Sorting Complexes Required for Transport - genetics | Molecular Sequence Data | Pituitary Neoplasms - complications | ACTH-Secreting Pituitary Adenoma - complications | Pituitary ACTH Hypersecretion - genetics | ACTH-Secreting Pituitary Adenoma - genetics | Receptor, Epidermal Growth Factor - metabolism | Pituitary Neoplasms - secretion | Neoplasm Proteins - genetics | Pro-Opiomelanocortin - genetics | Amino Acid Sequence | ACTH-Secreting Pituitary Adenoma - metabolism | Pituitary Neoplasms - genetics | Ubiquitin Thiolesterase - physiology | Pituitary Neoplasms - metabolism | Ubiquitin Thiolesterase - genetics | 14-3-3 Proteins - metabolism | Adrenocorticotropic Hormone - secretion | Sequence Homology, Amino Acid | Exome - genetics | Sequence Alignment | Animals | Endopeptidases - genetics | ACTH-Secreting Pituitary Adenoma - secretion | Pro-Opiomelanocortin - biosynthesis | Mutation | COS Cells | Endosomal Sorting Complexes Required for Transport - physiology | Endopeptidases - physiology | Gene mutations | Cushing syndrome | Physiological aspects | Genetic aspects | Research | Ubiquitin-proteasome system | Health aspects | Risk factors | Pituitary gland | Kinases | Rodents | Genes | Tumors | Index Medicus
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