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Journal Article
by Thorsson, Vésteinn and Gibbs, David L and Brown, Scott D and Wolf, Denise and Bortone, Dante S and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F and Plaisier, Christopher L and Eddy, James A and Ziv, Elad and Culhane, Aedin C and Paull, Evan O and Sivakumar, I.K. Ashok and Gentles, Andrew J and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S and Mose, Lisle E and Vo, Nam Sy and Liu, Jianfang and Liu, Yuexin and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila M and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M and Rao, Arvind and Chen, Ken and Krasnitz, Alexander and Hu, Hai and Malta, Tathiane M and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K and Weinstein, John N and Guinney, Justin and Saltz, Joel and Holt, Robert A and Rabkin, Charles S and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Akbani, Rehan and Broom, Bradley M and Hegde, Apurva M and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Immunity, ISSN 1074-7613, 04/2018, Volume 48, Issue 4, pp. 812 - 830.e14
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across... 
tumor immunology | immunotherapy | cancer genomics | integrative network analysis | immuno-oncology | tumor microenvironment | immune subtypes | immunomodulatory | Immunology | Infectious Diseases | Immunology and Allergy | GENOMIC ANALYSES | INFORMATION | T-CELL-RECEPTOR | REGULATORY NETWORK | CLASSIFICATION | IMMUNOLOGY | SEQUENCING DATA | SOMATIC MUTATIONS | COMPREHENSIVE ANALYSIS | PREDICTION | REVEALS | Transforming Growth Factor beta - immunology | Prognosis | Humans | Middle Aged | Th1-Th2 Balance - physiology | Male | Neoplasms - classification | Wound Healing - immunology | Young Adult | Transforming Growth Factor beta - genetics | Neoplasms - genetics | Neoplasms - immunology | Interferon-gamma - immunology | Adolescent | Aged, 80 and over | Adult | Female | Aged | Interferon-gamma - genetics | Wound Healing - genetics | Genomics - methods | Child | Macrophages - immunology | Cell proliferation | Cluster analysis | Transcription | Copy number | p53 Protein | Lung cancer | Genomics | Aneuploidy | Lymphocytes T | Genomes | Cell interactions | Macrophages | Immunotherapy | DNA methylation | miRNA | Deoxyribonucleic acid--DNA | Immune system | Medical research | Wound healing | Immunomodulation | Stockholders | Inflammation | T cell receptors | Communications networks | Gene expression | White blood cells | Inventors | Medical prognosis | γ-Interferon | Mutation | Cancer | Tumors | Immune Subtypes | Integrative Network Analysis | Cancer Genomics | Immuno-oncology | Tumor immunology
Journal Article
Journal of Statistical Computation and Simulation, ISSN 0094-9655, 09/2016, Volume 86, Issue 14, pp. 2781 - 2796
Journal Article
by Knijnenburg, Theo A and Wang, Linghua and Zimmermann, Michael T and Chambwe, Nyasha and Gao, Galen F and Cherniack, Andrew D and Fan, Huihui and Shen, Hui and Way, Gregory P and Greene, Casey S and Liu, Yuexin and Akbani, Rehan and Feng, Bin and Donehower, Lawrence A and Miller, Chase and Shen, Yang and Karimi, Mostafa and Chen, Haoran and Kim, Pora and Jia, Peilin and Shinbrot, Eve and Zhang, Shaojun and Liu, Jianfang and Hu, Hai and Bailey, Matthew H and Yau, Christina and Wolf, Denise and Zhao, Zhongming and Weinstein, John N and Li, Lei and Ding, Li and Mills, Gordon B and Laird, Peter W and Wheeler, David A and Shmulevich, Ilya and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Akbani, Rehan and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Wang, Jing and Weinstein, John N and Zhang, Jiexin and Abeshouse, Adam and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Cell Reports, ISSN 2211-1247, 04/2018, Volume 23, Issue 1, pp. 239 - 254.e6
Journal Article
by Bhatt, Deepak L and Steg, Philippe Gabriel and Mehta, Shamir R and Leiter, Lawrence A and Simon, Tabassome and Fox, Kim and Held, Claes and Andersson, Marielle and Himmelmann, Anders and Ridderstråle, Wilhelm and Chen, Jersey and Song, Yang and Diaz, Rafael and Goto, Shinya and James, Stefan K and Ray, Kausik K and Parkhomenko, Alexander N and Kosiborod, Mikhail N and McGuire, Darren K and Harrington, Robert A and Santos, Vladimir and Jain, Ashit and Lendel, Irina and Russo, Michael and Haught, W H and Bouza, Manuel and Gogia, Harinder and Banerjee, Supratim and Kichura, George and Kantaros, Louis and Padron, Francisco and Passi, Rakesh and Stone, Jay and Pursley, Michael and D'Urso, Michael and Gardner, Timothy and Bennett, James and Nour, Khaled and Saini, Satinder and Zhang, Wenwu and Kumbhani, Dharam and Thomas, Dustin and Angiolillo, Dominick and Bertolet, Barry and Roman-Miranda, Amaury and Black, Robert and Manshadi, Ramin and Vaca, Carlos and Blanco, Antonio and Napoli, Mark and Brabham, David and Akyea-Djamson, Ayim and Desai, Pratik and Prasada, Sudhir and Khaira, Ajit and Forgosh, Leslie and Lieber, Ira and Umpierrez, Guillermo and Singal, Dinesh and Londono, Juan and Fraser, Neil and Ruiz, Jose and Vega, Damaris and Rodriguez, Lilia and Brown, Christopher and Syed, Faizullah and Aggarwala, Guarav and Eaves, William and Foster, Michael and Gupta, Dinesh and Avino, David and Asfour, Wail and Tonnessen, Glen and Zhao, Xue-Qiao and Singh, Narendra and Brockmyre, Andrew and Lepor, Norman and Shammas, Nicolas and Blick, David and Hearne, Steven and Prodafikas, John and Carell, Edgar and Izzo, Mark and Karim, Amin and Zakhary, Bosh and Atieh, Mahmoud and Leichter, Steven and Meadows, Charles and Hotchkiss, David and Abu-Fadel, Mazen and Wiseman, Alan and Bander, Jeffrey and Shah, Mahesh and Banerjee, Subhash and Ganim, Ricky and Sopko, Karen and Khan, Misal and Lloret, Ramon and Weirick, Troy and Mehta, Rajendra and ... and THEMIS Steering Committee and Investigators and THEMIS Steering Comm Investigators and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Kardiologi and Medicinska och farmaceutiska vetenskapsområdet, centrumbildningar mm and Uppsala universitet and Institutionen för medicinska vetenskaper and Uppsala kliniska forskningscentrum (UCR)
The Lancet, ISSN 0140-6736, 09/2019, Volume 394, Issue 10204, pp. 1169 - 1180
Patients with stable coronary artery disease and diabetes with previous percutaneous coronary intervention (PCI), particularly those with previous stenting,... 
MEDICINE, GENERAL & INTERNAL | CLOPIDOGREL | PLATELET INHIBITION | RIVAROXABAN | DOUBLE-BLIND | POOLED ANALYSIS | OUTCOMES | ASPIRIN | ELEVATION MYOCARDIAL-INFARCTION | ANTIPLATELET THERAPY | DRUG-ELUTING STENTS | Coronary Stenosis - diagnostic imaging | Hypoglycemic Agents - therapeutic use | Myocardial Infarction - epidemiology | Double-Blind Method | Humans | Middle Aged | Male | Secondary Prevention | Coronary Artery Disease - drug therapy | Coronary Angiography | Coronary Artery Disease - complications | Cardiovascular Diseases - mortality | Coronary Artery Bypass | Female | Stroke - epidemiology | Aged | Aspirin - therapeutic use | Hemorrhage - chemically induced | Diabetes Mellitus, Type 2 - drug therapy | Drug Therapy, Combination | Platelet Aggregation Inhibitors - therapeutic use | Ticagrelor - therapeutic use | Diabetes Mellitus, Type 2 - complications | Percutaneous Coronary Intervention | Myocardial infarction | Intervention | Therapy | Heart attacks | Angioplasty | Medical services | Stenosis | Risk | Cardiovascular disease | Hemorrhage | Bleeding | Subgroups | Randomization | Motivation | Population | Diabetes mellitus (non-insulin dependent) | Heart diseases | Stents | Cerebral infarction | Aspirin | Stroke | Diabetes mellitus | Mortality | Coronary artery | Coronary artery disease | Disease control | Patients | Coronary vessels | Death | Diabetes | Acute coronary syndromes | Kardiologi | Clinical Medicine | Cardiac and Cardiovascular Systems | Medical and Health Sciences | Klinisk medicin | Medicin och hälsovetenskap
Journal Article