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1. Full Text Temporal Analysis of Sucrose-induced Phosphorylation Changes in Plasma Membrane Proteins of Arabidopsis
by Totte Niittylà and Anja T. Fuglsang and Michael G. Palmgren and Wolf B. Frommer and Waltraud X. Schulze
Molecular & Cellular Proteomics, ISSN 1535-9476, 10/2007, Volume 6, Issue 10, pp. 1711 - 1726
Sucrose is the main product of photosynthesis and the most common transport form of carbon in plants. In addition, sucrose is a compound that serves as a... 
SIGNAL-TRANSDUCTION | RECEPTOR KINASE | C-TERMINAL END | QUANTITATIVE PHOSPHOPROTEOMICS | H+-ATPASE AHA2 | SIEVE ELEMENTS | IN-VIVO | BIOCHEMICAL RESEARCH METHODS | PHOSPHATE SYNTHASE | MEDIATED TRANSCRIPTIONAL REGULATION | MASS-SPECTROMETRY | Protein Kinases - metabolism | Arabidopsis - enzymology | Molecular Sequence Data | Sucrose - pharmacology | Plasma Membrane Calcium-Transporting ATPases - metabolism | Arabidopsis Proteins - metabolism | Proton-Translocating ATPases - metabolism | Time Factors | Mass Spectrometry | Membrane Transport Proteins - metabolism | Cell Membrane - metabolism | Plant Proteins - metabolism | Phosphorylation - drug effects | Cell Membrane - drug effects | Amino Acid Sequence | Phosphopeptides - chemistry | Arabidopsis - drug effects | Arabidopsis - cytology | Aquaporins - metabolism | Seedlings - drug effects | Arabidopsis - metabolism | Arabidopsis Proteins - isolation & purification | Cell Membrane - enzymology | Substrate Specificity - drug effects | Arabidopsis Proteins - chemistry | Phosphopeptides - metabolism | Cluster Analysis | Phosphopeptides - isolation & purification | Seedlings - metabolism | Botanik | Botany
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2. Full Text Stable Isotope Labeling of Arabidopsis thaliana Cells and Quantitative Proteomics by Mass Spectrometry
by Albrecht Gruhler and Waltraud X. Schulze and Rune Matthiesen and Matthias Mann and Ole N. Jensen
Molecular & Cellular Proteomics, ISSN 1535-9476, 11/2005, Volume 4, Issue 11, pp. 1697 - 1709
Quantitative analysis of protein expression is an important tool for the examination of complex biological systems. Albeit its importance, quantitative... 
PROTEIN INTERACTIONS | SALICYLIC-ACID | SPECIFICITY | AMINO-ACIDS | BIOCHEMICAL RESEARCH METHODS | GENE FAMILY | GLUTATHIONE S-TRANSFERASES | POSTTRANSLATIONAL MODIFICATIONS | MEMBRANE-PROTEINS | IDENTIFICATION | EXPRESSION | Phosphorylation | Gas Chromatography-Mass Spectrometry | HSC70 Heat-Shock Proteins - analysis | Isoelectric Focusing | Molecular Sequence Data | Proteome - chemistry | Salicylic Acid - pharmacology | Glutathione Transferase - genetics | Mass Spectrometry | Arabidopsis Proteins - analysis | Proteomics - methods | Amino Acid Sequence | Ribulose-Bisphosphate Carboxylase - chemistry | Arabidopsis - drug effects | Arabidopsis - cytology | Cells, Cultured | Glutathione Transferase - metabolism | Proteome - analysis | Ribulose-Bisphosphate Carboxylase - analysis | Amino Acids | Arabidopsis - metabolism | Isotope Labeling - methods | HSC70 Heat-Shock Proteins - chemistry | Arabidopsis Proteins - chemistry | Protein Binding
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3. Full Text Function of calcium‐dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development
by Matschi, Susanne and Werner, Sören and Schulze, Waltraud X and Legen, Julia and Hilger, Hartmut H and Romeis, Tina
The Plant Journal, ISSN 0960-7412, 03/2013, Volume 73, Issue 6, pp. 883 - 896
Summary After a period of vegetative growth, plants undergo a developmental switch to the reproductive phase, inducing the transition to bolting, elongation of... 
lignification | CPK28 | secondary growth | calcium‐dependent protein kinase | stem elongation | gibberellic acid | Calcium-dependent protein kinase | Lignification | Gibberellic acid | Stem elongation | Secondary growth | NAC TRANSCRIPTION FACTORS | STRESS-RESPONSE | GIBBERELLIN | calcium-dependent protein kinase | FIBER DIFFERENTIATION | CELL-WALL BIOSYNTHESIS | TOBACCO | PLANT SCIENCES | ANION CHANNEL SLAC1 | ABSCISIC-ACID | WOOD FORMATION | Protein Kinases - metabolism | Plant Shoots - growth & development | Phosphorylation | Protein Kinases - genetics | Arabidopsis - growth & development | Xylem - anatomy & histology | Molecular Sequence Data | Plant Stems - genetics | Arabidopsis Proteins - metabolism | Lignin - metabolism | Gibberellins - metabolism | Plants, Genetically Modified | Gene Expression Regulation, Plant | Plant Shoots - genetics | Plant Stems - growth & development | Amino Acid Sequence | Arabidopsis Proteins - genetics | Transcription Factors - genetics | Anthocyanins - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Plant Stems - metabolism | Xylem - growth & development | Mutation | Amino Acid Substitution | Arabidopsis thaliana | Gene mutations | Gibberellins | Protein kinases | Analysis | Proteins | Plant biology | Plant reproduction | Plant growth
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4. Full Text Plasma Membrane-Associated Receptor-like Kinases Relocalize to Plasmodesmata in Response to Osmotic Stress
by Grison, MS and Kirk, P and Brault, ML and Wu, XN and Schulze, WX and Benitez-Alfonso, Y and Immel, F and Bayer, EM
PLANT PHYSIOLOGY, ISSN 0032-0889, 09/2019, Volume 181, Issue 1, pp. 142 - 160
Plasmodesmata act as key elements in intercellular communication, coordinating processes related to plant growth, development, and responses to environmental... 
VISUALIZATION | ARABIDOPSIS-THALIANA | MICRODOMAINS | TRANSPORT | PROTEIN | ROOT | SUCROSE | TISSUE | MOVEMENT | CLOSURE | PLANT SCIENCES | Physiological aspects | Cell membranes | Osmotic pressure | Observations | Plasmodesmata | Phosphotransferases
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5. Full Text Ammonium and nitrate regulate NH4+ uptake activity of Arabidopsis ammonium transporter AtAMT1;3 via phosphorylation at multiple C-terminal sites
by Wu, Xiangyu and Liu, Ting and Zhang, Yongjian and Duan, Fengying and Neuhäuser, Benjamin and Ludewig, Uwe and Schulze, Waltraud X and Yuan, Lixing
Journal of experimental botany, ISSN 0022-0957, 05/2019, Volume 70, Issue 18, pp. 4919 - 4930
In plants, nutrient transporters require tight regulation to ensure optimal uptake in complex environments. The activities of many nutrient transporters are... 
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6. Full Text Global Identification of Protein Complexes within the Membrane Proteome of Arabidopsis Roots Using a SEC-MS Approach
by Gilbert, Max and Schulze, Waltraud X
Journal of Proteome Research, ISSN 1535-3893, 01/2019, Volume 18, Issue 1, pp. 107 - 119
Biological processes consist of several consecutive and interacting steps as, for example, in signal transduction cascades or metabolic reaction chains. These... 
Arabidopsis thaliana | membrane proteins | protein mass spectrometry | size-exclusion chromatography | root | interactome | protein complex | LANDSCAPE | BIOCHEMICAL RESEARCH METHODS | AFFINITY PURIFICATION | GENETIC SYSTEM | PLASMA-MEMBRANE | EXTRACTION | DATABASE | DETERGENTS | THALIANA | H+-ATPASE
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7. Full Text Definition of arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-β-cyclodextrin and quantitative proteomics
by Kierszniowska, Sylwia and Seiwert, Bettina and Schulze, Waltraud X
Molecular and Cellular Proteomics, ISSN 1535-9476, 04/2009, Volume 8, Issue 4, pp. 612 - 623
Plasma membranes are dynamic compartments with key functions in solute transport, cell shape, and communication between cells and the environment. In mammalian... 
DETERGENT-RESISTANT MEMBRANES | EXTRACTION | FRACTIONATION | CHOLESTEROL | GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED PROTEINS | LIPID RAFTS | PURIFICATION | BIOCHEMICAL RESEARCH METHODS | IDENTIFICATION | PLASMA-MEMBRANE | DOMAINS | Arabidopsis Proteins - metabolism | Reproducibility of Results | Arabidopsis - drug effects | Membrane Microdomains - drug effects | Membrane Microdomains - metabolism | Phytosterols - metabolism | Proteomics | Cell Membrane - metabolism | Membrane Proteins - metabolism | beta-Cyclodextrins - pharmacology | Cell Membrane - drug effects | Arabidopsis - metabolism
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8. Plant phosphoproteomics
: methods and protocols
by Schulze, Waltraud X
2015, Methods in molecular biology, ISBN 1493926489, Volume 1306.
This detailed volume addresses recent developments in phosphoproteomic techniques with a particular focus on the plant system. Over the recent decades,... 
Photophosphorylation | methods | Proteomics | Plants
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9. Plant phosphoproteomics
: methods and protocols
by Schulze, Waltraud X
2015, Methods in molecular biology, ISBN 1493926489, Volume 1306.
This detailed volume addresses recent developments in phosphoproteomic techniques with a particular focus on the plant system. Over the recent decades,... 
Photophosphorylation | Phosphorylation | methods | Proteomics | Plants
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10. Full Text Plasma Membrane-Associated Receptor-like Kinases Relocalize to Plasmodesmata in Response to Osmotic Stress1[OPEN]
by Grison, Magali S and Kirk, Philip and Brault, Marie L and Wu, Xu Na and Schulze, Waltraud X and Benitez-Alfonso, Yoselin and Immel, Françoise and Bayer, Emmanuelle M
Plant Physiology, ISSN 0032-0889, 9/2019, Volume 181, Issue 1, pp. 142 - 160
Osmotic stress triggers rapid reorganization of the receptor kinases QSK1 and IMK2 at plasmodesmata and induces callose-mediated plasmodesmata closure.... 
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11. Full Text Dissecting the subcellular membrane proteome reveals enrichment of H.sup.+ transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells
by Pertl-Obermeyer, Heidi and Lackner, Peter and Schulze, Waltraud X and Hoepflinger, Marion C and Hoeftberger, Margit and Foissner, Ilse and Obermeyer, Gerhard
PLoS ONE, ISSN 1932-6203, 08/2018, Volume 13, Issue 8, p. e0201480
Usage | Research | Photosynthesis | Membrane proteins
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12. Full Text Classification and Interactions of LRR Receptors and Co-receptors Within the Arabidopsis Plasma Membrane - An Overview
by Xi, L and Wu, XN and Gilbert, M and Schulze, WX
FRONTIERS IN PLANT SCIENCE, ISSN 1664-462X, 04/2019, Volume 10, p. 472
Receptor kinases (RK) constitute the largest protein kinase family in plants. In particular, members of the leucine-rich repeat-receptor kinases (LRR-RKs) are... 
extracellular domain lengths | co-receptor | ACTIVATION | RECOGNITION | plasma membrane | ligand-perceiving | PLANT SCIENCES | PERCEPTION | STRUCTURAL BASIS | LRR-RKs | GENE FAMILY | PEPTIDE-HORMONES | PROTEINS | CONTRIBUTES | ASSOCIATION | KINASES | Arabidopsis | Analysis | Plant cell membranes | Leucine | Structure | Identification and classification | Protein kinases
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13. Full Text Plant Phosphoproteomics
: Methods and Protocols
by Schulze, Waltraud X
2015, 2015, Methods in Molecular Biology, ISBN 9781493926473, Volume 1306
Life Sciences | Plant Sciences | Proteomics
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14. Full Text Quantitation in mass-spectrometry-based proteomics
by Schulze, Waltraud X and Usadel, Börn
Annual Review of Plant Biology, ISSN 1543-5008, 06/2010, Volume 61, Issue 1, pp. 491 - 516
Mass-spectrometry-based proteomics, the large-scale analysis of proteins by mass spectrometry, has emerged as a new technology over the last decade and become... 
Statistical anaylsis | Reciprocal labeling | Stable isotope labeling | Label-free quantitation | Mass spectrometry | Proteomics | PLASMA-MEMBRANE PROTEINS | ARABIDOPSIS-THALIANA | proteomics | stable isotope labeling | DIFFERENCE GEL-ELECTROPHORESIS | TEMPORAL ANALYSIS | ION-TRAP | PLANT SCIENCES | LABEL-FREE | RELATIVE QUANTIFICATION | reciprocal labeling | statistical anaylsis | AMINO-ACIDS | mass spectrometry | CELL-CULTURE | ABSOLUTE QUANTIFICATION | label-free quantitation | Plant Proteins - analysis | Plants - chemistry | Proteomics - methods | Mass Spectrometry | Isotopes | Analysis
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15. Full Text Proteomics Wants cRacker: Automated Standardized Data Analysis of LC–MS Derived Proteomic Data
by Zauber, Henrik and Schulze, Waltraud X
Journal of Proteome Research, ISSN 1535-3893, 11/2012, Volume 11, Issue 11, pp. 5548 - 5555
The large-scale analysis of thousands of proteins under various experimental conditions or in mutant lines has gained more and more importance in... 
ion intensities | large scale data analysis | software tool | automation | quantitative proteomics | multivariate statistics | Automation | Analysis of Variance | Arabidopsis - cytology | Proteomics | Sucrose - metabolism | Chromatography, Liquid - methods | Mass Spectrometry - methods | Phosphopeptides - analysis | Arabidopsis - metabolism
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16. Full Text Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen‐starved Arabidopsis seedlings
by Engelsberger, Wolfgang R and Schulze, Waltraud X
The Plant Journal, ISSN 0960-7412, 03/2012, Volume 69, Issue 6, pp. 978 - 995
Summary Nitrogen is an essential macronutrient for plant growth and development. Inorganic nitrogen and its assimilation products control various metabolic,... 
metabolic enzymes | membrane proteins | signaling | proteomics | phosphorylation | nitrogen | PLASMA-MEMBRANE PROTEINS | ENZYME-ACTIVITIES | CYTOSOLIC GLUTAMINE-SYNTHETASE | IDENTIFICATION | PLANT SCIENCES | METABOLISM | THALIANA | IN-VIVO | C-STATUS | POSTTRANSLATIONAL REGULATION | PLANT-GROWTH | Arabidopsis - physiology | Phosphorylation | Membrane Glycoproteins - metabolism | Genes, Plant | Cell Membrane - genetics | Culture Media - metabolism | Arabidopsis Proteins - metabolism | Time Factors | Cell Membrane - metabolism | Arabidopsis Proteins - genetics | Nitrogen - metabolism | Potassium Compounds - metabolism | Signal Transduction | Computational Biology | Solubility | Transcription Factors - genetics | Arabidopsis - metabolism | Membrane Glycoproteins - genetics | Protein Transport | Arabidopsis - genetics | Transcription Factors - metabolism | Nitrates - metabolism | Phosphopeptides - genetics | Phosphopeptides - metabolism | Seedlings - metabolism | Proteins | Plant biology | Flowers & plants | Nitrogen | Original
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17. Full Text Highly efficient single-step enrichment of low abundance phosphopeptides from plant membrane preparations
by Wu, Xu Na and Xi, Lin and Pertl-Obermeyer, Heidi and Li, Zhi and Chu, Liang-Cui and Schulze, Waltraud X
Frontiers in Plant Science, ISSN 1664-462X, 09/2017, Volume 8, p. 1673
Mass spectrometry (MS)-based large scale phosphoproteomics has facilitated the investigation of plant phosphorylation dynamics on a system-wide scale. However,... 
Kinase substrate relationship | Membrane protein | Phosphorylation | Proteomics | Nitrate signaling | ARABIDOPSIS-THALIANA | proteomics | REGULATORY PHOSPHORYLATION SITE | PLASMA-MEMBRANE | ZEA-MAYS-L | PLANT SCIENCES | PHOSPHOPROTEOME PROFILING REVEALS | QUANTITATIVE PHOSPHOPROTEOMICS | kinase substrate relationship | membrane protein | SUCROSE-PHOSPHATE SYNTHASE | H+-ATPASE | nitrate signaling | ION AFFINITY-CHROMATOGRAPHY | NITRATE REDUCTASE | phosphorylation
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18. Full Text Proteomics approaches to understand protein phosphorylation in pathway modulation
by Schulze, Waltraud X
Current Opinion in Plant Biology, ISSN 1369-5266, 2010, Volume 13, Issue 3, pp. 279 - 286
Signaling pathways in all organisms consist of series of phosphorylation and dephosphorylation events that define directionality and allow different levels of... 
PLASMA-MEMBRANE PROTEINS | BRASSINOSTEROID SIGNAL-TRANSDUCTION | ARABIDOPSIS-THALIANA | PHOSPHOPROTEOMIC ANALYSIS | STRATEGY | IDENTIFICATION | IN-VIVO PHOSPHORYLATION | MASS-SPECTROMETRY | REVEALS | KINASES | PLANT SCIENCES | Phosphorylation | Plants - metabolism | Signal Transduction | Mass Spectrometry | Proteomics | Plant Proteins - metabolism | Protein Processing, Post-Translational | Proteome - metabolism
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19. Full Text Unraveling sterol-dependent membrane phenotypes by analysis of protein abundanceratio distributions in different membrane fractions under biochemical and endogenous sterol depletion
by Zauber, Henrik and Szymanski, Witold and Schulze, Waltraud X
Molecular and Cellular Proteomics, ISSN 1535-9476, 12/2013, Volume 12, Issue 12, pp. 3732 - 3743
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20. Plant phosphoproteomics
: methods and protocols
by Schulze, Waltraud X and Schulze, Waltraud X., editor
2015, ISBN 1493926489
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